BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11940.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327322 jgi|Araly1|327322|fgenesh1_pm.C_scaffold_6002542 701 0.0
Ahg943085 jgi|Araly1|943085|scaffold_603629.1 590 6e-168
> Ahg327322 jgi|Araly1|327322|fgenesh1_pm.C_scaffold_6002542
Length=786
Score = 701 bits (379), Expect = 0.0
Identities = 687/824 (83%), Gaps = 67/824 (8%)
Strand=Plus/Plus
Query 1 ATGTTTTCCGGAGAGGGTGCTTCACAAATCCGCATAGCTCCCGAAGATAAACCAATCCAA 60
|||| ||| ||||| ||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1 ATGTATTCTGGAGAAGGTGCTTCACAAACCCGCACAGCCCCCGAAGATAAACCAATCCAA 60
Query 61 TGGTGCTACCAAATTCTAAAGTCGCGTGACTTCAAGAGCGCTCGATATATCACTCAAATG 120
||||| ||||| ||||||||| ||||||||| ||||||||||||||||||| |||||||
Sbjct 61 AGGTGCCACCAACTTCTAAAGTTGCGTGACTTTAAGAGCGCTCGATATATCATTCAAATG 120
Query 121 AATTTG-AAGTTAAGCAAGACACGTCATGATGAG-TATGAGAAAGGCCTAGCCATTTGTG 178
||| | || ||||||||| ||||||||||||| | |||||||| ||||| ||||||||
Sbjct 121 AATAAGCGAG-TAAGCAAGAAACGTCATGATGAGCT-TGAGAAAGCCCTAGTCATTTGTG 178
Query 179 ACATCCTGATCGCCGCAGAGAACCGGCTTCCCAACGGGTTGTTGGATTGCTACGGCATGA 238
||||||| ||||| ||||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 179 ACATCCTTATCGCTGCAGAGAACCGTCTTCCCCACGGGTTGTTGGATTGTTACGGCATGA 238
Query 239 TCCGGATGACCAGACCTGGACTAGTTTTATATCAGAACATCGAGAAGGA-ATTGAATCTT 297
||||||||||| ||||||||| ||||||| | |||| |||||||| || ||||||||||
Sbjct 239 TCCGGATGACCGGACCTGGACCCGTTTTATTTGAGAATATCGAGAA-GATATTGAATCTT 297
Query 298 TTGGGATGGGGAAACATTAGTAACCCTTTCCCATTTAGACAAGAAGCTTCTG-AAAAGTT 356
|||||||||||| ||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 298 TTGGGATGGGGAGACACTAGTAACCCTTTCCCATTTAGACATGAAGCTTCTGAAAAAG-C 356
Query 357 CTTCTTTGCTTGGTCGCTTCTGTCCAATCCAACCATTAAGGAGATGTACGATTACGCTAC 416
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 357 CTTCTTTGCTTGGTCGCTCCTGTCCAATCCAACCATTAAGTCGATGTACGATTACGCTAT 416
Query 417 CTCGGATGA-GGTAAACCTTGAACCCCAAGGAAATGTCAATGAATACATGGATGTAGACA 475
|||||| || | | ||||||||||||| || | | | | ||||||
Sbjct 417 CTCGGACGATGAT-AACCTTGAACCCC-----AA-G-----G---A-A---ATGTAG--- 454
Query 476 GCAGCAGCCAAAGCGGTTATGGATTAGGTAG-TGTCCTTTGTTCTGATTTGCCTGGATCA 534
|||||||||||| |||| |||||||||| | || | | | ||| || || || |
Sbjct 455 GCAGCAGCCAAATCGGTGATGGATTAGG-CGATGACATAACCTATGA-GTG-CTTGA-AA 510
Query 535 GAGTACTTGAAAGAGTTTGCGGATGTGTATCCCTTGCCGCTGGCGGA-GAAAGGACAGGC 593
|||| || | | | ||||||||| |||||||||||||||| || |||| |||||||
Sbjct 511 GAGT--TT--CCG-G-TAGCGGATGTGAATCCCTTGCCGCTGGC-GAGGAAACGACAGGC 563
Query 594 TCCGCACAATCGG-TT---TGG-ATG-----------G-T---ATG-ACCATAATGTTGG 632
||||||||||||| || ||| ||| | | | | |||||||||||||
Sbjct 564 TCCGCACAATCGGTTTCGATGGAATGACACTTCCTTTGATCCCAAGAACCATAATGTTGG 623
Query 633 TCCTGAAACTAACAATAATGTGGTAGTTACTTATGAGGACGCTAAAGAGGAGGAGTGTGA 692
||||| |||||||||||| ||||||||| |||||| |||||| |||||||||||| |||
Sbjct 624 TCCTGGAACTAACAATAAGGTGGTAGTTGTTTATGACGACGCTGAAGAGGAGGAGTATGA 683
Query 693 CATGAGCTCT-AGTAGCGAACTGCGCATAATTAATGGAAGGAGAGTGAAAATTACCATTG 751
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CATGAGCT-TGAGCAGCGAACTGCGCATAATTAATGGAAGGAGAGTGAAAATTACCATTG 742
Query 752 AAGAAGCAGCAGAAACAAGTGATACTCCTAGTTGCTCAAGATGA 795
||||||||||| |||||| || |||| |||||||||||||||||
Sbjct 743 AAGAAGCAGCAAAAACAAATGCTACTGCTAGTTGCTCAAGATGA 786
> Ahg943085 jgi|Araly1|943085|scaffold_603629.1
Length=754
Score = 590 bits (319), Expect = 6e-168
Identities = 543/646 (84%), Gaps = 35/646 (5%)
Strand=Plus/Plus
Query 1 ATGTTTTCCGGAGAGGGTGCTTCACAAATCCGCATAG-CTCCCGAAGATAAACCAATCCA 59
|||||||| |||| ||||||||| ||| ||||| || | ||||||||||||||||||||
Sbjct 22 ATGTTTTCTAGAGAAGGTGCTTCAAAAAACCGCACAGAC-CCCGAAGATAAACCAATCCA 80
Query 60 ATGGTGCTACCAAATTCTAAAG-TCGCGTGACTTCAAGAGCGCTCGATATATCACTCAAA 118
| ||||| ||||| |||||||| | ||||||||| ||| | ||||||||||||| |||||
Sbjct 81 AAGGTGCCACCAACTTCTAAAGAT-GCGTGACTTTAAGGGTGCTCGATATATCATTCAAA 139
Query 119 TGAATTTG-AAGTTAAGCAAGACACGTCATGATGAGTATGAGAAAGGCCTAGCCATTTGT 177
||||| | || ||||||| | |||| | | ||||| |||||||| ||||| |||||||
Sbjct 140 TGAATAAGCTAG-TAAGCAATAAACGTGACGCTGAGTTTGAGAAAGCCCTAGTCATTTGT 198
Query 178 GACATCCTGATCGCCGCAGAGAACCGGCTTCCCAACGGGTTGTTGGATTGCTACGGCATG 237
|||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 199 GACATCCTTATCGCTGCAGAGAACCGGCTTCCCCACGGGTTGTTGGATTGTTACGGCATG 258
Query 238 ATCCGGATGACCAGACCTGGA-CTAGTTTTATATCAGAACATCGAGAAGGA-ATTGAATC 295
|||||||||||| |||||||| || || |||| | ||||||| ||||| || | ||||||
Sbjct 259 ATCCGGATGACCGGACCTGGACCT-GTGTTATTTGAGAACATGGAGAA-GATAATGAATC 316
Query 296 TTTTGGGATGGGGAAACATTAGTAACCCTTTCCCATTTAGACAAGAAGCTTCTG-AAAAG 354
|||||| ||||||| ||| || ||||||||||||||||||||| |||||||||| |||||
Sbjct 317 TTTTGGAATGGGGAGACACTACTAACCCTTTCCCATTTAGACATGAAGCTTCTGAAAAAG 376
Query 355 TTCTTCTTTGCTTGGTCGCTTCTGTCCAATCCAACCATTAAGGAGATGTACGATTACGCT 414
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 377 -CCTTCTTTGCTTGGTCGCTCCTGTCCAATCCAACCATTAAGGAAATGTACGATTATGCT 435
Query 415 ACCTCGGATGAGGTA-AACCTTGAACCCCAAGGAAATGTCAATGAATACATGGATGTAGA 473
| |||||| |||| | || |||||| ||||||||||||||| ||||| ||| ||||||
Sbjct 436 ATCTCGGACGAGG-ATAATCTTGAATCCCAAGGAAATGTCATTGAATGCATCAATGTAG- 493
Query 474 CAGCAGCAGCCAAAGCGGTTATGGATTA---GGT-AG---TG---TCCTTTG-TTC-TGA 521
|| ||| |||||||||| |||||||| ||| || | | | | |||
Sbjct 494 --GCGGCACCCAAAGCGGTGATGGATTAGGTGGTGAGAAAAGAAAGCGAAAGACGCGTGA 551
Query 522 TTTGCCTGGATCAGAGTACTTGAAAGAGTTT------GCGGATGTGTATCCCTTGCCGCT 575
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 552 TTTGCCTGGATCAGAGTACTTGAAAGAGTTTCCGACAGCGGATGTGAATCCCTTGCCGCT 611
Query 576 GGCGGAGAAAGGACAGGCTCCGCACAATCGGTTTGGATGGTATGAC 621
|||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 612 ATCGGAGAAACGACAGGCTCCGCACAATCGGTTTCGATGGAATGAC 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5