BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11950.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490013 jgi|Araly1|490013|fgenesh2_kg.6__3147__AT4G11950.1 1445 0.0
Ahg923226 jgi|Araly1|923226|scaffold_104507.1 769 0.0
Ahg950465 jgi|Araly1|950465|scaffold_802352.1 649 0.0
Ahg341528 jgi|Araly1|341528|fgenesh1_pg.C_scaffold_3001291 619 1e-176
Ahg945829 jgi|Araly1|945829|scaffold_702058.1 507 8e-143
Ahg334065 jgi|Araly1|334065|fgenesh1_pg.C_scaffold_1000630 494 6e-139
Ahg915980 jgi|Araly1|915980|Al_scaffold_0008_731 259 3e-68
> Ahg490013 jgi|Araly1|490013|fgenesh2_kg.6__3147__AT4G11950.1
Length=965
Score = 1445 bits (782), Expect = 0.0
Identities = 914/977 (94%), Gaps = 12/977 (1%)
Strand=Plus/Plus
Query 1 ATGGGCTCTATACCATTTATCTTCATCATCCTTCTTTTTCATGTACATAAATCCAAATCT 60
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGCTCTATACCATTCATCTTCATCATTCTTCTTTTTCACGTACATAAATCCAAATCT 60
Query 61 CAGACCATTGAATCAGCACATTTTCTTGATCTTATGATCAGAGATTACACCATTAGAAAC 120
||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 61 CAGACGATAGAATCAGCACATTTTCTTGATCTTATGATAAGAGATTACACCATCAGAAAC 120
Query 121 TTCAACATACATTTCAAGACAGGTGCTATCCAGAAAGTCCATCTTCCTTCGAATTTCTCC 180
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 TTCAACATTCATTTCAAGACAGGAGCGATCCAGAAAGTCCATCTTCCTTCGAATTTCTCC 180
Query 181 TCCATTGATATCGCCACAGCTAAGTTTAGATGTGGGAGTTTGAGAAGACACGGTGCAAGA 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCATTGATATCGCCACGGCTAAGTTTAGATGTGGGAGTTTGAGAAGACACGGTGCAAGA 240
Query 241 ATTGGAGAGTTTCACTTAGGTCCGGGCTTGACCGTGGAGCCATGTGTTGAGAGAGTGATC 300
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 ATCGGTGAGTTTCACTTAGGTCCGGGCTTGACGGTGGAGCCATGTGTTGAGAGAGTGATT 300
Query 301 CTGGTGAGACAGAACTTGGGGTTTAACTGGTCTTCTTATATTTACTCAACCGGTTATAAC 360
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CTGGTGAGACAGAACTTGGGTTTTAATTGGTCTTCTTATATTTACTCAACCGGTTATAAC 360
Query 361 TTAACCGGTTACAAATACCGGCTTGTGTCTCCTGTTCTTGGTTTATTGGCTTACAATTCA 420
|||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TTAACCGGTTACAATTACCTGCTTGTGTCTCCGGTTCTTGGTTTATTGGCTTACAATTCA 420
Query 421 AATCCGGACGGTGTTGCTGTGAATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAAC 480
|| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 AACCCGGACGGTGTGGCTGTGAATCCTTATGAGATTAACGTAATGGGCACGGAACAAAAC 480
Query 481 CCTATTTTGATCAAATTCTTAAGCAGTGAGGCAAGTGGTAGCCCTAAACCTAACACGAAG 540
|||||||||||||| ||||| | |||| | | |||||||||||||| ||||||
Sbjct 481 CCTATTTTGATCAAGTTCTT--G-AGTG-G-----T---AGCCCTAAACCTAATACGAAG 528
Query 541 AAGAACTCATCTGTCTTGTGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGAGAG 600
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 529 AAGAACTCATCTCTCTTGTGTGCTTGCTTCACAAGTAATGGTAACATAACGTTTAGAGAG 588
Query 601 CAAGTTTCAGCTTATGTTTGCTTGGGAACAAGACAAGGGCATTACGCGCTTGTGATTAGA 660
||| ||||||| || |||||||||||||||| | |||||||||||||||| |||||||||
Sbjct 589 CAATTTTCAGCCTACGTTTGCTTGGGAACAACAAAAGGGCATTACGCGCTGGTGATTAGA 648
Query 661 GCTCATGATAGTGGCGGTGGCGGTAGTACGGTGGTAACACCGTCGTCATCTCCGGCTTTG 720
||| |||||||| | ||||| ||||||||||||||||| ||| |||||||||| || ||
Sbjct 649 GCTGATGATAGTAGTGGTGGTGGTAGTACGGTGGTAACGCCGCCGTCATCTCCTGCGGTG 708
Query 721 ACTGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATAGGT 780
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 709 AATGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATTGGG 768
Query 781 TCAATAATTGGAGCGTTTCTGTTAGGGTTATTGGTGGTGGCGATGGTAGTgaaagggaag 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TCAATGATTGGAGCGTTTCTGTTAGGGTTATTGGTGGTGGCGATGGTAGTGAAAGGGAAG 828
Query 841 aagaaagcgatgagagaggagatggagaggagagcttatgaagaagaagCACTTCAGGTT 900
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 829 AAGAAAGCGATGAGAGAGGAGCTGGAGAGAAGAGCTTATGAAGAAGAAGCACTTCAGGTT 888
Query 901 TCAATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCGAGATCAAGAACGATTCCAAGA 960
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 889 TCAATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCGAGAACAAGAACGGTTCCAAGA 948
Query 961 TTTGAAAATACTAGGTA 977
||||| |||||||||||
Sbjct 949 TTTGACAATACTAGGTA 965
> Ahg923226 jgi|Araly1|923226|scaffold_104507.1
Length=832
Score = 769 bits (416), Expect = 0.0
Identities = 556/622 (89%), Gaps = 16/622 (3%)
Strand=Plus/Plus
Query 363 AACCGGTTACAAATACCGGCTTGTGTCTCCTGTTCTTGGTTTATTGGCTTACAATTCAAA 422
||||||||| || ||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 152 AACCGGTTATAATTACGGGCTCGTGTCTCCGGTTCTTGGTTTATTGGCTTACAATTCAAA 211
Query 423 TCCGGACGGTGTTGCTGTGAATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAACCC 482
||| | ||||| |||||||||||||||||| ||||| |||| ||||||||||||||| |
Sbjct 212 CCCGTATGGTGTGGCTGTGAATCCTTATGAGATTAACATAATAGGCACGGAACAAAACTC 271
Query 483 TATTTTGATCAAATTCTTAAGCAGTGAGGCAAGTGGTAGCCCTAAACCTAACACGAAGAA 542
|||||||||||| ||||| || || | ||||||||| |||||||||||||||||||||||
Sbjct 272 TATTTTGATCAAGTTCTTGAGTAGCGTGGCAAGTGGGAGCCCTAAACCTAACACGAAGAA 331
Query 543 GAACTCATCTGTCTTGTGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGAGAGCA 602
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 332 GAACTCATCTCTCTTGTGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGGGAGCA 391
Query 603 AGTTTCAGCTTATGTTTGCTTGGGAACAAGACAAGGGCATTACGCGCTTGTGATTAGAGC 662
||||||||| | |||| |||||||||||||||||||||||| | ||| |||||||||||
Sbjct 392 AGTTTCAGCCTCCGTTTTCTTGGGAACAAGACAAGGGCATTATGTGCTGGTGATTAGAGC 451
Query 663 TCATGATAGTGGCGGTGGCGGTAGTACGGTGGTAACACCGTCGTCATCTCCGGCTTTGAC 722
|||||||||| | ||| | ||||||||| ||||||| ||| ||||||||||||| |||
Sbjct 452 TCATGATAGTAGTGGTCGTGGTAGTACGTTGGTAACGCCGCCGTCATCTCCGGCGGTGAA 511
Query 723 TGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATAGGTTC 782
|||||||||||||||||||||| || ||| ||| | |||||||| || ||
Sbjct 512 TGACGGTGGCGGAGGGAAATTG-GC-GGT------TGG-G------AGTGTGATTGGGTC 556
Query 783 AATAATTGGAGCGTTTCTGTTAGGGTTATTGGTGGTGGCGATGGTAGTgaaagggaagaa 842
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 557 AATGATTGGAGCGTTTCTGTTACGGTTATTGGTGGTGGCGATGGTAGTGAAAGGGAAGAA 616
Query 843 gaaagcgatgagagaggagatggagaggagagcttatgaagaagaagCACTTCAGGTTTC 902
|||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 617 GAAAACTATGAGAGAGGAGATGGAGAGGAGAGCTTATGAAGAAGAAGCACTTCCGGTTTC 676
Query 903 AATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCGAGATCAAGAACGATTCCAAGATT 962
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 677 AATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCAAGAACAAGAACGGTTCCAAGATT 736
Query 963 TGAAAATACTAGGTATAAGTAA 984
||| ||||||||||| | ||||
Sbjct 737 TGACAATACTAGGTACA-GTAA 757
> Ahg950465 jgi|Araly1|950465|scaffold_802352.1
Length=601
Score = 649 bits (351), Expect = 0.0
Identities = 482/543 (89%), Gaps = 18/543 (3%)
Strand=Plus/Plus
Query 443 ATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAACCCTATTTTGATCAAATTCTT-A 501
||||||||||| |||| |||||||||| ||||||||| ||||||||||||| ||||| |
Sbjct 1 ATCCTTATGAGATTAATATAATGGGCACAGAACAAAACTCTATTTTGATCAAGTTCTTGA 60
Query 502 AGCAGTGAGGCAAGTGGTAGCCCTAAACCTAACACGAAGAAGAACTCATCTGTCTTGTGT 561
| || | ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 61 A-TAGCGTGGCAAGTGGGAGCCCTAAACCTAACACAAAGAAGAACTCATCTCTCTTGTGT 119
Query 562 GCTTGCTTCACAAGTAACGGTAACATAACGTTTAGAGAGCAAGTTTCAGCTTATGTTTGC 621
||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| |
Sbjct 120 GCTTGCTTCACAAGTAACGGTAACATAACGTTTAGGGAGCAAGTTTCAGCCTCCGTTTTC 179
Query 622 TTGGGAACAAGACAAGGGCATTACGCGCTTGTGATTAGAGCTCATGATAGTGGCGGTGGC 681
||||||||||||||||||||||| | ||| ||||||||||||||||||||| | ||| |
Sbjct 180 TTGGGAACAAGACAAGGGCATTATGTGCTGGTGATTAGAGCTCATGATAGTAGTGGTCGT 239
Query 682 GGTAGTACGGTGGTAACACCGTCGTCATCTCCGGCTTTGACTGACGGTGGCGGAGGGAAA 741
||||||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 240 GGTAGTACGTTGGTAACGCCGCCGTCATCTCCGGCGGTGAATGACGGTGGCGGAGGGAAA 299
Query 742 TTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATAGGTTCAATAATTGGAGCGTTTCTG 801
||| || ||| ||| | |||||||| || ||||| |||||||||||||||
Sbjct 300 TTG-GC-GGT------TGG-G------AGTGTGATTGGGTCAATGATTGGAGCGTTTCTG 344
Query 802 TTAGGGTTATTGGTGGTGGCGATGGTAGTgaaagggaagaagaaagcgatgagagaggag 861
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 345 TTACGGTTATTGGTGGTGGCGATGGTAGTGAAAGGGAAGAAGAAAACGATGAGAGAGGAG 404
Query 862 atggagaggagagcttatgaagaagaagCACTTCAGGTTTCAATGGTGGGTCATGTTAGA 921
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 405 ATGGAGAGAAGAGCTTATGAAGAAGAAGCACTTCCGGTTTCAATGGTGGGTCATGTTAGA 464
Query 922 GCTAATCCTAATGCTTCGAGATCAAGAACGATTCCAAGATTTGAAAATACTAGGTATAAG 981
||||||||||||||||| ||| |||||||| |||||||| |||| ||||||||||| | |
Sbjct 465 GCTAATCCTAATGCTTCAAGAACAAGAACGGTTCCAAGACTTGACAATACTAGGTACA-G 523
Query 982 TAA 984
|||
Sbjct 524 TAA 526
> Ahg341528 jgi|Araly1|341528|fgenesh1_pg.C_scaffold_3001291
Length=519
Score = 619 bits (335), Expect = 1e-176
Identities = 458/515 (89%), Gaps = 18/515 (3%)
Strand=Plus/Plus
Query 463 ATGGGCACGGAACAAAACCCTATTTTGATCAAATTCTTAAGCAGTGAGGCAAGTGGTAGC 522
|||||||||||||||||| ||||||||||||| ||||| || || | ||||||||| |||
Sbjct 1 ATGGGCACGGAACAAAACTCTATTTTGATCAAGTTCTTGAGTAGCGTGGCAAGTGGGAGC 60
Query 523 CCTAAACCTAACACGAAGAAGAACTCATCTGTCTTGTGTGCTTGCTTCACAAGTAACGGT 582
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CCTAAACCTAACAC---GAAGAACTCATCTCTCTTGTGTGCTTGCTTCACAAGTAACGGT 117
Query 583 AACATAACGTTTAGAGAGCAAGTTTCAGCTTATGTTTGCTTGGGAACAAGACAAGGGCAT 642
|||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 118 AACATAACGTTTAGGGAGCAAGTTTCAGCCTCCGTTTTCTTGGGAACAAGACAAGGGCAT 177
Query 643 TACGCGCTTGTGATTAGAGCTCATGATAGTGGCGGTGGCGGTAGTACGGTGGTAACACCG 702
|| | ||| ||||||||||||||||||||| | ||| | ||||||||| ||||||| |||
Sbjct 178 TATGTGCTGGTGATTAGAGCTCATGATAGTAGTGGTCGTGGTAGTACGTTGGTAACGCCG 237
Query 703 TCGTCATCTCCGGCTTTGACTGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCG 762
||||||||||||| ||| ||||||||||||||||| ||| ||| ||| ||| |
Sbjct 238 CCGTCATCTCCGGCGGTGAATGACGGTGGCGGAGGGAGATT-AGC-GGT------TGG-G 288
Query 763 GTTGGGAGTGTGATAGGTTCAATAATTGGAGCGTTTCTGTTAGGGTTATTGGTGGTGGCG 822
||||| || || ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 289 ------AGTGTAATTGGGTCAATGATTGGAGCGTTTCTGTTACGGTTATTGGTGGTGGCG 342
Query 823 ATGGTAGTgaaagggaagaagaaagcgatgagagaggagatggagaggagagcttatgaa 882
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 343 ATGGTAGTGAAAGGGGAGAAGAAAACGATGAGAGAGGAGATGGAGAGGAGAGCTTATGAA 402
Query 883 gaagaagCACTTCAGGTTTCAATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCGAGA 942
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 403 GAAGAAGCACTTCCGGTTTCAATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCAAGA 462
Query 943 TCAAGAACGATTCCAAGATTTGAAAATACTAGGTA 977
|||||||| ||||||||||||| |||||||||||
Sbjct 463 ACAAGAACGGTTCCAAGATTTGACAATACTAGGTA 497
> Ahg945829 jgi|Araly1|945829|scaffold_702058.1
Length=1069
Score = 507 bits (274), Expect = 8e-143
Identities = 778/1010 (77%), Gaps = 79/1010 (8%)
Strand=Plus/Plus
Query 18 TATCTTCATCAT-CCT-TCTT-TT-TCATGTACATAAATCCAAATCTCAGA-CCATTGAA 72
|||| ||||||| | | |||| || |||| | || |||| | ||||| | | ||| ||
Sbjct 41 TATCATCATCATACTTCTCTTATTATCAT-TCCACCAATCTGAGTCTCA-ATCGATTCAA 98
Query 73 TC-AGCACATTTTCTTGATCTTATGATCAGAGATTACACCATTAGAAACTTCAA-CATAC 130
|| | ||||| | |||||||| ||||| ||||||||||||||||||||||| || | | |
Sbjct 99 TCTA-CACATCTCCTTGATCTCATGATTAGAGATTACACCATTAGAAACTTTAAGC-T-C 155
Query 131 -ATTTCAAGACAGGTGCTAT--C-CAGAAAGTCCATCTTCCTTCGAATTTCTCCT-CCAT 185
|| |||| ||| | || || | |||||| ||||||| ||||| ||||||| || ||
Sbjct 156 AATCTCAACACA-G-GC-ATCACTCAGAAAATCCATCTCCCTTCTAATTTCT-CTGGTAT 211
Query 186 TGATATCGCCACAGCT-AAGTTTAGATGTGGGAGTTTGAGAAGACACGGTGCAAGAATTG 244
|| || | ||| | | ||||| || |||||||||||||||||| | || |||| |||||
Sbjct 212 CGACATTGACAC-GGTCAAGTTAAGGTGTGGGAGTTTGAGAAGATATGGAGCAAAAATTG 270
Query 245 GAGAGTTTCACTTAGGTCCGGGC-TTGACCGTGGAGCCATGTGTTGAGAGAGTGATCCTG 303
||||||||||| | ||| | ||| || || |||||||||||| |||||||| || ||
Sbjct 271 GAGAGTTTCACATCGGTTCAGGCGTT-ACGGTGGAGCCATGTCCGGAGAGAGTCATGCTA 329
Query 304 GTGAGACAGAA-CTTGGGGTTT-AACTGGTCTTCTTATATTTACTCAACCGGTTATAACT 361
| ||||| || ||| ||||| || ||||| || | || ||||| || ||||||||||
Sbjct 330 ATTAGACAAAACCTT--GGTTTGAATTGGTC--CTCA-ATCTACTCTACTGGTTATAACT 384
Query 362 TAACCGGTTACAAATACCGGCTTGTGTCTCCTGTTCTTGGTTTATTGGCTTACAATTCAA 421
|| |||| ||||| ||| ||| ||||| || |||||||||||||||||||| ||| | |
Sbjct 385 TATCCGGCTACAATTACAAGCTCGTGTCACCGGTTCTTGGTTTATTGGCTTATAATGCTA 444
Query 422 ATCCGGACGGTGTTGCTGTGAATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAACC 481
| || |||||||| || ||||||||||||||||||||| | || || || |||||||
Sbjct 445 ACCCTGACGGTGTGGCCACGAATCCTTATGAGGTTAACGTTGTAGGTACCGATCAAAACC 504
Query 482 CTATTTTGA-TCAAATTCTTAAGCAGTGAGGC-A--AGT---GGTAGCCCTAAACCTA-- 532
| ||||| | || | ||||| |||| |||| | | | ||||||||| ||||
Sbjct 505 CAATTTT-AGTCGATTTCTTGAGCAACAAGGCAACTAATAACACTAGCCCTAACCCTACG 563
Query 533 AC-ACGAAGAAGAACTCATCTGTCTTGTGTGCTTGCTTCACAAGTAACGGTAACATAACG 591
|| |||||||||||||| || ||||||||||| || || |||||||||| ||||| ||||
Sbjct 564 ACGACGAAGAAGAACTCGTCAGTCTTGTGTGCGTGTTTTACAAGTAACGCTAACACAACG 623
Query 592 TTTAGAGAGCAAGTTTCAG-CTTATGTTTGCT--TGGGAACAAGACAAGGGCATTACGCG 648
||||| |||||||| || | | ||||| || | ||| ||||||||||||||||||||
Sbjct 624 TTTAGTGAGCAAGTCTC-GCCGTATGTATG-TAAAGGG-ACAAGACAAGGGCATTACGCT 680
Query 649 CT--TG-TG-A-TTAG-AGCTCATGATAG-TG-GCGGTGGCGGTAGTACGGTGGTAACA- 699
|| || || | || |||||| | || || | || |||| || |||||| |
Sbjct 681 CTCGTGATGAAGACAGAAGCTCA-AAAAGATGATC-ATGACGGTGGT--GGTGGT-GGAG 735
Query 700 CCGT--CGTCATCTCCGGCTTTGACTGACGGTGGCGGA-G-GGAAA-TTGAGCCGGTGGA 754
|| ||||||| ||| ||| || || |||| | ||||| |||||||||||||
Sbjct 736 TGGTGACGTCATCGACGGAGATGAATGGTGGCAACGGAGGAGGAAAGTTGAGCCGGTGGA 795
Query 755 AAGTGGCGGTTGGGAGTGTGATAGGTTCAATAATTGGAGCGTTTCTGTTAGGG-TTATTG 813
|||||||||| ||||||||||| || ||| |||||||| ||||| | ||| | ||
Sbjct 796 AAGTGGCGGTGGGGAGTGTGATTGGGTCAGGGATTGGAGCAATTCTGCT-GGGAATGTTA 854
Query 814 GTGGTGGCGATGGTAGTgaaagg-gaagaagaaagcgatgagagaggagatggagaggag 872
|||||||||||| | ||| |||| |||||||||||| |||||||| || || ||||| ||
Sbjct 855 GTGGTGGCGATGCTGGTG-AAGGTGAAGAAGAAAGCAATGAGAGAAGAAATAGAGAGAAG 913
Query 873 agcttatgaagaagaagCACTTCAGGTTTCAATGGTGGGTCATGTTAGAGCTAATCCTAA 932
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 914 AGCTTATGAAGAAGAAGCTCTTCAGGTTTCAATGGTGGGTCATGTTAGAGCT---CCTAC 970
Query 933 TGCTTC-GAGATCAAGAACGATTCCAAGATTTGAAAAT-ACTAGGTATAA 980
|||| | | || | ||||| |||| ||| ||| || | |||||||||
Sbjct 971 TGCTCCTG-GAACTAGAACTCTTCCTAGAATTGCCGATGA-TAGGTATAA 1018
> Ahg334065 jgi|Araly1|334065|fgenesh1_pg.C_scaffold_1000630
Length=540
Score = 494 bits (267), Expect = 6e-139
Identities = 337/371 (91%), Gaps = 3/371 (1%)
Strand=Plus/Plus
Query 615 TGTTTGCTTGGGAACAAGACAAGGGCATTACGCGCTTGTGATTAGAGCTCATGATAGTGG 674
||| ||||||||||||||||||||||| || | ||| ||||||||||||||||||||| |
Sbjct 117 TGTCTGCTTGGGAACAAGACAAGGGCACTATGTGCTGGTGATTAGAGCTCATGATAGTAG 176
Query 675 CGGTGGCGGTAGTACGGTGGTAACACCGTCGTCATCTCCGGCTTTGACTGACGGTGGCGG 734
||| | ||||||||| ||||||| || ||||||||||||| ||| |||||||||||
Sbjct 177 TGGTCGTGGTAGTACGTTGGTAACGCCACCGTCATCTCCGGCGGTGAAGGACGGTGGCGG 236
Query 735 AGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATAGGTTCAATAATTGGAGC 794
||||||||| |||||||||||| |||||||||| | |||||| || ||||| ||||||||
Sbjct 237 AGGGAAATTAAGCCGGTGGAAATTGGCGGTTGGAAATGTGATTGGGTCAATGATTGGAGC 296
Query 795 GTTTCTGTTAGGGTTATTGGTGGTGGCGATGGTAGTgaaagggaagaagaaagcgatgag 854
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 297 GTTTCTGTTACGGTTATTGGTGGTGGGGATGGTAGTGAAAGGGAAGAAGAAAGCGATGAG 356
Query 855 agaggagatggagaggagagcttatgaagaagaagCACTT-CAGGTTTCAATGGTGGGTC 913
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 357 AGAGGAGATGGAGAGGAGAGCTTATGAAGAAGAAGCACTTTC-GGTTTCAATGGTGGGTC 415
Query 914 ATGTTAGAGCTAATCCTAATGCTTCGAGATCAAGAACGATTCCAAGATTTGAAAATACTA 973
||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||
Sbjct 416 ATGTTAGAGCTAATCCTAATGCTTCAAGAACAAGAACGGTTCCAAGATTTGACAATACTA 475
Query 974 GGTATAAGTAA 984
|||| | ||||
Sbjct 476 GGTACA-GTAA 485
Score = 152 bits (82), Expect = 4e-36
Identities = 102/112 (91%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 463 ATGGGCACGGAACAAAACCCTATTTTGATCAAATTCTTAAGCAGTGAGGCAAGTGGTAGC 522
||||||||| |||||||| |||||||||||| |||||||| || | ||| ||||| |||
Sbjct 1 ATGGGCACGAAACAAAACTTTATTTTGATCAAGTTCTTAAGTAGCGTGGCTAGTGGGAGC 60
Query 523 CCTAAACCTAACACGAAGAAGAACTCATCTGTCTTGTGTGCTTGCTTCACAA 574
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CCTAAACCTAACACGAAGAAGAACTCATCTCTCTTGTGTGCTTGCTTCACAA 112
> Ahg915980 jgi|Araly1|915980|Al_scaffold_0008_731
Length=462
Score = 259 bits (140), Expect = 3e-68
Identities = 162/173 (94%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 439 GTGAATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAACCCTATTTTGATCAAATTC 498
||||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||
Sbjct 10 GTGAATCCTTATGAGATTGACGTAATGGGCACGGAACAAAACCCTGTTTTGATCAAGTTC 69
Query 499 TTAAGCAGTGAGGCAAGTGGTAGCCCTAAACCTAACACGAAGAAGAACTCATCTGTCTTG 558
|| || || ||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 70 TTGAGTAGCGAGGCAAGTGGGAGTCCTAAACCTAACACGAAGAAGAACTCATCTCTCTTG 129
Query 559 TGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGAGAGCAAGTTTCAGC 611
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 130 TGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGGGAGCAAGTTTCAGC 182
Score = 128 bits (69), Expect = 7e-29
Identities = 103/119 (87%), Gaps = 4/119 (3%)
Strand=Plus/Plus
Query 660 AGCTCATGATAGTGGCGGTGGCGGTAGTACG-GTGGTAACACCGTCGTCATCTCCGGCT- 717
||||||||||||| | ||| | | ||||| | |||||||| ||| |||||||| | |||
Sbjct 183 AGCTCATGATAGTAGTGGTCGTGATAGTA-GAGTGGTAACGCCGCCGTCATCT-CTGCTG 240
Query 718 TTGACTGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGAT 776
||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 241 GTGAATGACGGTGGCGGAGGGAAATTAAGCTGGTGGAAAGTGGCGGTTGGGAGTGTGAT 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5