BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11960.1
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490014 jgi|Araly1|490014|fgenesh2_kg.6__3148__AT4G11960.1 1578 0.0
Ahg492575 jgi|Araly1|492575|fgenesh2_kg.7__2008__AT4G22890.3 869 0.0
> Ahg490014 jgi|Araly1|490014|fgenesh2_kg.6__3148__AT4G11960.1
Length=1157
Score = 1578 bits (854), Expect = 0.0
Identities = 1083/1187 (91%), Gaps = 41/1187 (3%)
Strand=Plus/Plus
Query 12 CATCACCATCTCAATTCTCAACCACACAAATCCAAAGCTTCTAACttttttttttGTTCT 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4 CATCACCATCTCAATTCTCAACCACACAAATCCAAAGCTTCTAACTTTTTTTTTTCTTCT 63
Query 72 TCGTCCCGGACAAGAGAAAACAACGATCTCACTCAATCATCGGCGTGAGGGATAAAGACG 131
|| | || | || ||||||||||||||||||||| | | ||| |||
Sbjct 64 TC-TTCC---C---AG---ACAACGATCTCACTCAATCAT---C-------A-AAA-ACG 101
Query 132 ATGGCTTTTACTCTAACAATCCCTAGATTTTCTGCAATTTCTCGCAAACCCATCACTTGT 191
||||| ||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 102 ATGGCCTTTACTCTAACAATCCCCCGGCTTTCTACAATTTCTCGCAAACCCATCACTTGT 161
Query 192 TCTTCTTCGAGGACACAGTGTCCTGCTCCCTTTACCCATGGACGATCGATTTCTCTCAGA 251
|||||||| | | | | |||||| |||||| ||||||||||||||||||||||||
Sbjct 162 TCTTCTTC---G--A-A--G-ACTGCTCACTTTACTCATGGACGATCGATTTCTCTCAGA 212
Query 252 CGAAGACTTAC-CTTATTGCCCCTTAAAGCTTCTACTGATCAATCAGGTCAGGTGGGTGG 310
|||||||| | ||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 213 AGAAGACTT-CTCTTATTGCCCCTTCAAGCTTCTACTGATCAATCAGGTCAGGTTGGTGG 271
Query 311 GGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCATCAACAAGAATGAGAAGAGAAC 370
||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 272 GGAAGAAGTTGATGGCAAGATTTTGCCATATTGTAGCATCAACAAGAGTGAGAAGAGAAC 331
Query 371 TATCGGTGAAATGGAACAAGAGTTCCTCCAAGCGATGCAATCGTTTTATTACGAAGGCAA 430
||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 332 AATCGGAGAAATGGAACAAGAGTTTCTCCAAGCCATGCAATCGTTCTATTACGAAGGCAA 391
Query 431 AGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 AGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAG 451
Query 491 CAGTGTTGTCATGCTAAGTTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGT 550
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 452 CAGTGTTGTTATGCTAAGTTCTGATGAACAAAGATTTCTTGAAGCTTCAATGGCTTATGT 511
Query 551 CTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGAT 610
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 512 CTCTGGAAACCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAATTGAAACTAAAGAT 571
Query 611 GGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTA 670
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 GGACGGAAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTA 631
Query 671 TAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGTTGAATGTACCAGCAACTGTTGT 730
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 632 CAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGTTGAATGTACCTGCAACTGTTGT 691
Query 731 TGCTCTCGGACTATTTTTCTTTCTTGATGACATTACTGGTTTTGAAATCACGTACCTGCT 790
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 692 TGCTCTCGGACTATTTTTCTTCCTTGATGACATTACGGGTTTTGAAATCACGTACCTGCT 751
Query 791 CGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGGTTCGCTGCGGTGCCTGCAATTGT 850
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 752 CGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGGTTTGCTGCGGTGCCTGCAATTGT 811
Query 851 ATATCTGGCGTTATCACTCACCAAACTGATCCTCAAAGACTTCTTGATCTTGAAGGGCCC 910
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 812 CTATCTGGCGCTATCACTCACCAAACTCATCCTCAAAGACTTCTTGATCTTGAAGGGCCC 871
Query 911 TTGCCCAAACTGTGGAACAGAGAATGTATCTTTCTTTGGAACGATACTATCCATCCCCAA 970
||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||
Sbjct 872 TTGTCCAAACTGTGGAACAGAGAATGTATCCTTCTTTGGAACAATACTTTCCATCTCCAA 931
Query 971 TGATAGTAACACCAACAATGTCAAATGCTCAGGCTGTGGAACGGAGATGGTCTATGACTC 1030
|||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 932 TGATGGTAACACCAACAATGTCAAATGCTCTGGCTGTGGAACGGAGATGATCTATGACTC 991
Query 1031 AGGTTCTCGTTTGATCACATTACCAGAAGGAGGGAAAGCTTAAATC-TAAGAGCCAAGGG 1089
||||||||||||||||||||||||||||||||| |||||||||| | || |||||||||
Sbjct 992 AGGTTCTCGTTTGATCACATTACCAGAAGGAGGCAAAGCTTAAAACCTATGAGCCAAGGC 1051
Query 1090 TTATGTAGAAGTGTATGTAAAATTAATACTAACAAATGAAGAAGGTGGAGAAATTGAAGA 1149
|||| ||| ||||||| |||| | |||||||| ||||| |||||||||||||| ||||
Sbjct 1052 AAATGTGGAAATGTATGTTAAATGA-TACTAACAGATGAATAAGGTGGAGAAATTAAAGA 1110
Query 1150 AGAAGGAGAAAAACCAAAG--TTTGTATG----CTGTTTTGTATAAT 1190
| ||| |||| | | |||| ||||| || ||||||||||||||
Sbjct 1111 AAAAGAAGAATATCAAAAGAGTTTGTTTGTGTTCTGTTTTGTATAAT 1157
> Ahg492575 jgi|Araly1|492575|fgenesh2_kg.7__2008__AT4G22890.3
Length=1221
Score = 869 bits (470), Expect = 0.0
Identities = 726/848 (86%), Gaps = 24/848 (3%)
Strand=Plus/Plus
Query 236 ATCGATTT-CTCTCAGACGAAGA--CTTACCTTATTGCC-CCTTAAAGCTTCTACTGATC 291
|||||||| || | ||| ||||| ||| ||| ||||| | |||||| | || || |
Sbjct 209 ATCGATTTCCT-TGAGAAGAAGAGTCTT--CTTGTTGCCTGC-TAAAGCCACAACAGAGC 264
Query 292 AATCAGGT-CAGGTGGGTGGGGAAGAA-GTTGATAGCAA-GATTTTACCTTATTGTAGCA 348
|||||||| |||| ||| || | | || || |||||||| | |||| |||||||||||||
Sbjct 265 AATCAGGTACAGG-GGGAGGAG-ACAACGTCGATAGCAATG-TTTTGCCTTATTGTAGCA 321
Query 349 TCAACAAGAATGAGAAG-AGAACTATCGGTGAAATGGAACAAGAGTTCCTCCAAGCGATG 407
|||||||| ||||||| || || || |||||||||||||||||||| ||||||||||||
Sbjct 322 TCAACAAGGCTGAGAAGAAG-ACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGATG 380
Query 408 CAATCGTTT-TATTACGAAGGCAAAGCGATTATGTCTAATGAAGAGTTTGATAACCTTAA 466
||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 381 CAATC-TTTCTATTACGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAA 439
Query 467 AGAAGAGTTGATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAGATT 526
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 440 AGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCCGATGAACAAAGGTT 499
Query 527 CCTTG-AAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATG 585
| ||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 500 C-TTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATG 558
Query 586 ATAAGCTCAAAATGAAACTAAAGATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGAT 645
||||||||||| ||||||||||||| || || || || |||||||| |||||||||||||
Sbjct 559 ATAAGCTCAAACTGAAACTAAAGATTGATGGTAGCGAAATTGTGTGCGAGGGTCCAAGAT 618
Query 646 GCAGTCTTCGTAGTAAAAAGGTTTATAGTGATCTTGCCATTGATTACTTCAAAATGTTCT 705
||||||| |||||||||||||| ||||||||||| || | ||||| ||||||||||| |
Sbjct 619 GCAGTCTCCGTAGTAAAAAGGTGTATAGTGATCTCGCTGTAGATTATTTCAAAATGTTAT 678
Query 706 TGTTGAATGTACCAGCAACTGTTGTTGCTCTCGGACTATTTTTCTTTCTTGATGACATTA 765
|||||||||| |||||||| ||||||||||||||||| |||||||| || || |||||||
Sbjct 679 TGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTCTTTTTCTTCCTCGACGACATTA 738
Query 766 CTGGTTTTGAAATCACGTACCTGC-TCGAGCTTCCGGAACCATTCAGTTTCATTTTCACA 824
| |||||||| ||||| ||| | | | |||||| ||||||||| ||||||||| |||||
Sbjct 739 CAGGTTTTGAGATCACATACAT-CATGGAGCTTTCGGAACCATACAGTTTCATATTCACG 797
Query 825 TGGTTCGCTGCGGTGCCTGCAATTGTATATCTGGCGTTATCACTCACCAAACTGATCCTC 884
||||||||||| ||||||| |||||||||||||| |||||| |||||||||||||| ||
Sbjct 798 TGGTTCGCTGCCGTGCCTGTGATTGTATATCTGGCTTTATCAATCACCAAACTGATCATC 857
Query 885 AAAGACTTCTTGATCTTGAAGGGCCCTTGCCCAAACTGTGGAACAGAGAATGTATCTTTC 944
||||||||||||||||||||||| ||||| || || |||||||| || || || |||
Sbjct 858 AAAGACTTCTTGATCTTGAAGGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTC 917
Query 945 TTTGGAACGATACTATCCATCCCCAATGATAGTAACACCAACAATGTCAAATGCTC-AGG 1003
|||||||| || || || ||| ||| || | | || |||||| |||||||||| | |
Sbjct 918 TTTGGAACAATTCTGTCAATCTCCAGTGGTGGCAAAACCAACGCTGTCAAATGCACCAA- 976
Query 1004 CTGTGGAACGGAGATGGTCTATGACTCAGGTTCTCGTTTGATCACATTACCAGAAGGAGG 1063
||||||||| | |||||| |||||||| |||||||| ||||||||||| ||||||||| |
Sbjct 977 CTGTGGAACCGCGATGGTGTATGACTCGGGTTCTCGGTTGATCACATTGCCAGAAGGAAG 1036
Query 1064 GAAAGCTT 1071
||||||
Sbjct 1037 CCAAGCTT 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53821516185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5