BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11970.1
Length=1871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490016 jgi|Araly1|490016|fgenesh2_kg.6__3150__AT4G11970.2 1517 0.0
> Ahg490016 jgi|Araly1|490016|fgenesh2_kg.6__3150__AT4G11970.2
Length=1411
Score = 1517 bits (821), Expect = 0.0
Identities = 937/993 (94%), Gaps = 8/993 (1%)
Strand=Plus/Plus
Query 106 TTTAAAGAGGCATGTCTTCTGATACTGCTAAGGAAAATGCTTCTGTTGTCGATTCGTCTT 165
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 5 TTTAAAGAGGCATGTCTTCTGATACTGCTAAGGAAAATGCATCTGTTGTCGATTCATCTT 64
Query 166 TGACTGATTGGAAACAAGATTTAGGAAACTCTGATGATCCAGAGAGTACAAGTTACAGAA 225
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 65 TGACTGATTGGAAACAAGATATAGGAAACTCTGATGATCCAGAGAGTTCAAGTCACAGAA 124
Query 226 GCAAGGAAGACCATAAACTGT-CAAAGGTGGATGTTGATCGACGTAACTTTCCTGATCAA 284
|||| |||||||||||||||| |||| ||||| ||||| |||||||||||| ||||||||
Sbjct 125 GCAAAGAAGACCATAAACTGTCCAAA-GTGGAAGTTGAACGACGTAACTTTTCTGATCAA 183
Query 285 CTT-GAAAGTGCAAAGGCGAATAAGAATAGTAAACCAGGGTATCGA-ACGAGATATTTCA 342
|| |||||| | || ||||||||||||||||||| ||||| | | |||||||||||||
Sbjct 184 -TTAGAAAGTTCTAACCCGAATAAGAATAGTAAACCGGGGTA-CCAGACGAGATATTTCA 241
Query 343 TCATCAAAAGTCTGAATTATGATAATATTCAAGTTTCAGTTGAGAAAGGGATTTGGGCTA 402
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 242 TCATCAAAAGTCTGAATTATGATAATATACAAGTTTCAGTCGAAAAAGGGATTTGGGCTA 301
Query 403 CTCAAGTAATGAATGAGCCAATATTGGAAGGCGCTTTTCATAAATCTGGTC-GAGTGATT 461
||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 302 CTCAAGTTATGAATGAGCCAATATTGGAAGGCGCTTTTCACAAATCTGG-CAGAGTGATT 360
Query 462 TTAATCTTCAGCGTGAACATGAGCGGATTCTTCCAAGGGTATGCAGAGATGTTGTCTCCT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTAATCTTCAGCGTGAACATGAGCGGATTCTTCCAAGGGTATGCAGAGATGTTGTCTCCT 420
Query 522 GTGGGTTGGAGGCGAGACCAGATATGGAGTCAGGGAGGTGGTAAAAACAATCCCTGGGGA 581
||||| |||||| ||||||| |||||||| ||||||||||||||||||||| | ||||||
Sbjct 421 GTGGGATGGAGGAGAGACCATATATGGAGCCAGGGAGGTGGTAAAAACAATTCGTGGGGA 480
Query 582 CGTAGTTTTAAAGTAAAATGGTTGCGGTTGAGTGAATTGCCTTTTCAGAAAACACTTCAT 641
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CGTAGTTTTAAAGTAAAATGGTTGCGATTGAGTGAATTGCCTTTTCAGAAAACACTTCAT 540
Query 642 CTCAAGAATCCTTTGAATGATTACAAGCCTGTCAAGATTAGCCGAGATTGCCAGGAATTA 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCAAGAATCCTTTGAATGATTACAAGCCTGTCAAGATTAGCCGAGATTGCCAGGAATTA 600
Query 702 CCTGAAGATATCGGTGAAGCACTTTGTGAACTCCTTGATGCAAATAGCTGCGATGACGGG 761
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 CCTGAAGATATCGGTGGAGCACTTTGTGAACTGCTTGATGCAAATAGCTGCGATGACGGG 660
Query 762 TTGCTGAATAGCTCTTCTAGGGATGATTATTCAACAAAAAGGTCCCGCGCAGAACCTCCA 821
|||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 661 TTGCTGAATAGCTCCTCTAGGGATGATTATTCTACAAAAAAGTCCCGCGCAGAACCTCCA 720
Query 822 TCTTCTTCAGGAGACGATGAGTATAATAACAATCTTTGGGGCCATACACCAATGTCTTAC 881
||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 721 TCTTCCTCAGGAGACGAAGAGTACAATAACAATCTTTGGGGCCATACACCGATGCCTTAC 780
Query 882 CCTCCTACGGTCTACCCAAACCAGGATGACCTCAGCAGATTTCATCTTGCACAGCAGAGA 941
|||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 781 CCTCCTGCGGTCTACCCAAACCAGGATGACTTAAGCAGATTTCATCTTGCACAGCAGAGA 840
Query 942 GGATATGGAGTTTCCCCCGAATATCTGCATACATCACCAGGTGCATCTAACTCTCGCACG 1001
||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 841 GGATATGGAGTTTCCTCGGAATATCTCCATACATCATCAGGTGCATCTAACTCTCGCACG 900
Query 1002 GAGCAAGACAAGTCTTTACGATTCAACTCATGGTGTTTGCCTTTGGAAAGCCCTCTCGCG 1061
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 GAGCAAGAAAAGTCTTTACGATTCAACTCATGGTGTTTGCCTTTGGAAAGCCCTCTTGCG 960
Query 1062 AATTCTCTAACCGATGATGATTTTCTTGAAATG 1094
||||| ||||||||||||||||||||||| |||
Sbjct 961 AATTCCCTAACCGATGATGATTTTCTTGACATG 993
Score = 514 bits (278), Expect = 9e-145
Identities = 395/447 (88%), Gaps = 26/447 (6%)
Strand=Plus/Plus
Query 1434 tttt-ttg-CA-GTCTTATGAAGAGTACGTTGAAACCCATGGCAAATGCATGAAGCAGCT 1490
|||| ||| || |||||||||||| |||||||||||||| ||| ||||||||| || ||
Sbjct 981 TTTTCTTGACATGTCTTATGAAGAATACGTTGAAACCCACAGCAGATGCATGAAACAACT 1040
Query 1491 TGGTCTTCC--T--GTGATTCCACAATCACGATCAATACAAGAGCCATCAAGTAGAACTG 1546
||||||||| | |||||||||||||||||| | ||||||||||||||||||| ||| |
Sbjct 1041 TGGTCTTCCTGTCAGTGATTCCACAATCACGAGCCATACAAGAGCCATCAAGTAAAACAG 1100
Query 1547 ATGATGTAAGCAATGGTTCTTCAAAAGATCAGCCATCATCAAGAAAGAGAGGACG-ACAT 1605
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1101 ATGATGTAAGCAATGGTTCTTCGAAAGATCAGCCATCATCAAGAAAGAGAGGACGGA-AT 1159
Query 1606 TCATCCTAGGATTCAACTACAAGACTCACAACTCTAGCC-CGAAAATCACATTGAAATGC 1664
|||||||||| ||||||||||| ||| |||||||| || | |||||||||| ||||||
Sbjct 1160 TCATCCTAGGGTTCAACTACAAAACTGGCAACTCTA-CCACAAAAATCACATCAAAATGC 1218
Query 1665 ACAAGAATATGT-AGTGCCATTTCGATTGTACGGTGATGGAGAAGTTGTTGTGATATTGT 1723
| |||||||||| | ||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 1219 ATAAGAATATGTCA-TGCCACTTCGATTGTACGGTGATGGAGAAGTTGTTGTCATGTTGT 1277
Query 1724 AAGATGTTCATTTTGCCCTGGTGGTTTATAGAAACCAGAAGACTGTAACTAAAAGTTTCT 1783
|| |||||||||| ||| | | | | ||||||||||||||||| ||||||||
Sbjct 1278 AACATGTTCATTTGGCC--G-------A-A-A--CCAGAAGACTGTAACTAGAAGTTTCT 1324
Query 1784 TCTTTTGATTGCCCAAACTTGTACAGTTTCAACTTCAAATATGGCAACATGTAAACTTTT 1843
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TCTTTTGATTGCCGAAACTTGTACAGTTTCAACTTCAAATATGGCAACATGTAAACTTTT 1384
Query 1844 GGAAACCTAAACCCTAAATTGGGTTTG 1870
|||||||||||||||||||||||||||
Sbjct 1385 GGAAACCTAAACCCTAAATTGGGTTTG 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70276502025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5