BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11980.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490017 jgi|Araly1|490017|fgenesh2_kg.6__3151__AT4G11980.1 1736 0.0
> Ahg490017 jgi|Araly1|490017|fgenesh2_kg.6__3151__AT4G11980.1
Length=1142
Score = 1736 bits (940), Expect = 0.0
Identities = 1087/1155 (94%), Gaps = 22/1155 (2%)
Strand=Plus/Plus
Query 4 TTGCTTTCACGTTTTTCATTGATGGCT-G-----GCTTTACTCTTCTTCCCTCGCGGTTA 57
||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 1 TTGCTTTCACGTTTTTCATCGATGGCTGGCTTCCGCTTTACTCTTCTTCCCTCGCGGTTA 60
Query 58 CTCGCGTTTCCTTCACGCGCTTTACCTCGTCGCCTTCATCACCACCATGCAAAGCTGATT 117
||||||| |||| |||||||||| |||| ||| |||||| ||||||||||||||||||
Sbjct 61 CTCGCGTGTCCTCCACGCGCTTTCCCTCATCGTCTTCAT---CACCATGCAAAGCTGATT 117
Query 118 CTTCGCTGCAAAATGTCTTCTTCTTCTTCCTCTCTTACTCAATCCATCACTCTCCCGAGC 177
|||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||
Sbjct 118 CTTCGCTGCAAAATGTCTTCTTCTTC--CC-CTCTGACTCATTCCATCACTCTCCCGAGC 174
Query 178 CAACCCAACGAGCCTGTCCTTGTCTCTGCAACCGCTGGAATCTCTTCTTCCGATTTCAGG 237
||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||
Sbjct 175 CAACCCAACGAGCCTGTCCTTATCTCTGCAACCTCTGGAATCTCTGCTTCTGATTTCAGG 234
Query 238 GATGCGATTGATTCATCTCTGTTTAGGAATTGGCTAAGGAATTTGGAATCAGAGAGTGGA 297
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 235 GATGCGATTGATTCATCTCTGTTTAGAAATTGGCTAAGGAATTTGGAATCAGAGACTGGA 294
Query 298 ATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGGGAGTTGATATGTTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGGGAGTTGATATGTTT 354
Query 358 GGCAAAAGAATTGGATTTCTCAAATTCAAAGCGGATATTTTCGACAAGGAAACTGGTCAA 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGCAAAAGAATTGGTTTTCTCAAATTCAAAGCGGATATTTTCGACAAGGAAACTGGTCAA 414
Query 418 AAGGTTCCAGGTATTGTATTTGCACGAGGACCAGCTGTAGCTGTGCTTATTCTCTTGGAG 477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 415 AAGGTTCCAGGTATTGTATTTGCACGGGGACCAGCTGTAGCTGTGCTTATTCTCTTGGAG 474
Query 478 TCAGATGGTGAGACTTATGCGGTTCTCACTGAACAGGTTCGGGTTCCTACTGGGAAGATT 537
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 TCGGATGGTGAGACTTATGCGGTTCTCACTGAACAGGTTCGAGTTCCTACTGGGAAGATT 534
Query 538 GTTCTGGAATTACCTGCTGGAATGTTGGATGATGATAAAGGTGACTTTGTTGGTACTGCA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GTTCTGGAATTACCTGCTGGAATGTTGGATGATGATAAAGGTGACTTTGTTGGTACTGCA 594
Query 598 GTTCGCGAGGTCGAAGAGGAGATTGGTATAAAACTGAAAAAAGAAGATATGGTTGATCTC 657
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GTTCGTGAGGTCGAAGAGGAGATTGGTATAAAACTGAAAAAAGAAGATATGGTTGATCTC 654
Query 658 ACTGCTTTTCTTGACCCATCTACTGGTTACCGGATCTTCCCTTCTCCTGGAGGCTGTGAT 717
|| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 655 ACGGCTTTCCTTGACCCATCTACAGGTTACCGGATCTTCCCTTCGCCTGGAGGCTGTGAT 714
Query 718 GAAGAGATGAGCGTGTTTCTTTACAGAGGACAAGTCGAAAAGGAAACAATTAGACAGTTG 777
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 715 GAAGAGATGAGCGTGTTTCTTTACAGAGGACAAGTGGAAAAAGAAACAATTAGACAATTG 774
Query 778 CAAGGCAAAGAGACAGGACTCCGTGAACACGGTGAGTTCATCAAAGTCCGACTCATCCCA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CAAGGCAAAGAGACAGGACTCCGTGAACACGGTGAGTTCATCAAAGTCCGACTCATCCCA 834
Query 838 TATAGAGAGCTCTGGCGCAAAACAGCTGACGCTAAGGTTCTTATGAGCATTGGTCTCTAT 897
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TACAGAGAGCTCTGGCGCAAAACAGCTGACGCTAAGGTTCTTATGAGCATTGGTCTCTAC 894
Query 898 GAAATGGCTCAGCGAGAGGGTCTTGTGTCCAGCCAGAGACTGAAACCCA-ACTCTTGATC 956
|||||||||||| | |||||||| |||||||| || |||||||||| | ||||||||
Sbjct 895 GAAATGGCTCAGAGGGAGGGTCTCGTGTCCAGTCA----CTGAAACCCAGA-TCTTGATC 949
Query 957 TCCTACAATTCTCTGAAATATA-CAATAACTGGATTCAGTCAACCAGATGAGATAGATTG 1015
|||||||||||||||||| ||| || |||||||||||||||||| |||||||||||||||
Sbjct 950 TCCTACAATTCTCTGAAAGATATCA-TAACTGGATTCAGTCAACAAGATGAGATAGATTG 1008
Query 1016 AGATTAGACGTTCTTATGTTGTAAAAGGAGTTTTTAGATAAATGTTATCGCTTT-ATAAC 1074
|||||||||||||||||||||||||||||| |||||| | | || ||||| |||||
Sbjct 1009 AGATTAGACGTTCTTATGTTGTAAAAGGAGCTTTTAGTTCCTTAAGAT-GCTTTTATAAC 1067
Query 1075 TTGGTACCATGACAACTTGGGAACTTATCTTTAGAACAAAAGATTTTGCAAACCCAATTT 1134
|||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 1068 TTGGTACCATGAAAACTTGGGAATTTATCTTTAAAACAAAAGATTTTACAAACCCAATTT 1127
Query 1135 AGGGTTTAGGTTTCC 1149
|||||||||||||||
Sbjct 1128 AGGGTTTAGGTTTCC 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5