BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11990.1
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490018 jgi|Araly1|490018|fgenesh2_kg.6__3152__AT4G11990.1 2501 0.0
> Ahg490018 jgi|Araly1|490018|fgenesh2_kg.6__3152__AT4G11990.1
Length=1873
Score = 2501 bits (1354), Expect = 0.0
Identities = 1722/1892 (91%), Gaps = 55/1892 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaCAGTGACGTTTATTTCCTTCTCTGCAATTCTTCTTC-TC--CTTCTGTTCACT 57
|||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1 AAAAAAACAGAGACGTTTATTTCCTTCTCTGCAATTCTTCTTCTTCTTCTTCTGTTCACT 60
Query 58 CATCAAATCCAATGATGTTAAAATCACACATAAATTAGGGTTTCTTGTTGGTGAGTGACG 117
||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 61 CATCAAAACCAATGATGATAAAATCACTCATAAATTAGGGTTTCTTGTTGGTGAGTGA-G 119
Query 118 TTAAAAACCCACCAG-T-GAATTCTCTCTGTTTCTGTGTTACTGTGTACAGTGGAGATTT 175
| | | | | | |||| |||| ||||| || | | || | |
Sbjct 120 -TGTTCAGGCGTC-GTTAAAATT-TCTC----TCTGT-TT-C----T---GT---G---T 157
Query 176 TAAagagagat-atggagatggagacggacacagagacagagtccgatgaagatatggag 234
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 158 TAAAGAGAGATAATGGAGATGGAGACGGAGACAGAGACGGAGTCCGATGAAGATATGGAG 217
Query 235 atggagacaATGGTGTTTGAAGTGACTGAAATTGATTTGGAGTATGAGTTTGATGCTTCT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ATGGAGACAATGGTGTTTGAAGTGACTGAAATTGATTTGGAGTATGAGTTTGATGCTTCT 277
Query 295 CGTTGGTTTGATTTCACTCGAGAGGAGTTGCCGTTGGAGTCTCGTGCTGCTGAACTTTGG 354
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 278 CGTTGGTTTGATTTTACTCGAGAGGAGTTGTCTTTGGAGTCTCGTGCTGCTGAACTTTGG 337
Query 355 TTCGAGACCGCTCAGTCTTATCCACCGTCTCCTTTTGCAATGAAACTGTTAATGATAGAA 414
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 338 TTCGAGACCGCTCAGTCTTATCCACCTTCTCCTTTTGCTATGAAACTGTTAATGAAAGAG 397
Query 415 GAG-GTTTAT--GATGAAAAGACCGAGTCTTTGTCAAAATCAGAAGATGGGGAAGTCACA 471
||| |||| | ||||| ||||| |||||||||||||||||||||||||| ||||| | |
Sbjct 398 GAGAGTTTTTCTGATGATAAGACTGAGTCTTTGTCAAAATCAGAAGATGGAGAAGTTATA 457
Query 472 GTAGAAGTTCAGGAGAGTGACAGAGAAATCCCTCAGCAACCAGATGTGAATGAAACAGGA 531
||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 458 GTAGATGTTCAGGAGAATGACAGAGAAATTTCTCAGCAACCAGATGTGAATGAAACAGGA 517
Query 532 AATGGAATGAAGTCTGGGGTGTTTAGATTCATTCAAGGTGGT---ACTTTGAGCAAAGTT 588
|||||||||| ||||||||| |||| |||||||||||||||| ||||| | |||||||
Sbjct 518 AATGGAATGAGGTCTGGGGTATTTACATTCATTCAAGGTGGTGGTACTTTAAACAAAGTT 577
Query 589 CCAAA-CGATTCCTTACATAAAGGACCAACATTTAGCAATCGGATTCATAGTGATAAGCT 647
||||| | | ||||||| ||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 578 CCAAATC-AGTCCTTACTTAAAGGACCTACATTTAGCAATCGGATTCATTCTGATAAACT 636
Query 648 CAAGTACCGACCAAAGTCAAGCATCAGGCCTATAACGAGAAGCTCAACATTGATGAAACC 707
|| | ||||||||||||||| |||||||| ||| |||||||||| ||||||||||||||
Sbjct 637 GAAATGCCGACCAAAGTCAAGTATCAGGCCAATACCGAGAAGCTCGACATTGATGAAACC 696
Query 708 TACTGCTAGCGTTTTAGCAAAACAAGATAATGCCAGACTGCATATGCAAGTGGATGAAAT 767
||||||||| | |||||||||||||||||||||||| || |||||||||||||||
Sbjct 697 GACTGCTAGCCTATTAGCAAAACAAGATAATGCCAGA----AT--GCAAGTGGATGAAAT 750
Query 768 TAAGTGTCTTTCATCTGAAATCCAATCTGCTAAAAGACAGAAGCTCGATGGTGGTCTACT 827
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 751 TAAGTGTCCTTCATCTGAAATTCAATCTGCTAAAAGACAGAAGCTCGATGGTGGTCTACT 810
Query 828 TCGTAAGGTTGCTGAAGCGGCTCAAGAAACAAATTTGGTCCATAAGGCACTCAAGAAGGA 887
|||||||||||||||||| | || ||||| ||||||||||| ||| |||||||||||||
Sbjct 811 TCGTAAGGTTGCTGAAGCAACGCAGGAAACGAATTTGGTCCACAAGACACTCAAGAAGGA 870
Query 888 TCTTGATAAAAACTCACTACATACCAGGATGAAGATTACTATCCCACAGGAGCCTGATTT 947
|||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 871 TCTTGATAGAAACTCACTACATGCTAGGATGAAGATTACTGTCCCACAGGAGCCTGATTT 930
Query 948 TGCAACTTCACATAGAGCAAATAGGATACGGCACAAGAACGA-TGCTAAGTTGGAGCAGG 1006
|||||| |||||||||||||||||||||||||||||| | | || ||||||||| ||||
Sbjct 931 TGCAACATCACATAGAGCAAATAGGATACGGCACAAGGGC-ACTGATAAGTTGGACCAGG 989
Query 1007 ACTCAACATCAGTATATAGATTCAAAGCACGACCCTTGAACCGAAAAATCTTCGA-GGCT 1065
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 990 ACTCAACATCAGTGTATAGATTCAAAGCACGCCCCTTGAACCGAAAAATCTTCGACGG-T 1048
Query 1066 CCATCATTGCCCATTCGAAAAAACAGCACTCCTAAACTACCTGAATTTCAAGAATTTCGT 1125
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 CCATCATTGCCCATTCGGAAAAACAGCACTCCTAAACTACCTGAATTTCAAGAATTTCGC 1108
Query 1126 TTAAAGACCTCAGAAAGAGCTATGCAACATTCATCAGCAGTATCAACTTCGTCATATCAG 1185
|||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1109 TTAAAGACTTCCGAAAGAGCTATGCAACATTCATCAGCAGTATCAACACCGTCTTATCAG 1168
Query 1186 GGAAATAATAATCATAAGGAGGCAGATAAGCCTAATAGGACA---TTTCCTGACGGTGTT 1242
|||| || | ||| ||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct 1169 GGAACTAGTTATCGTAAGGAGTCAGATAAGCCTAATAGGACAGCATTTCTTGACGGTGTT 1228
Query 1243 AACAGGGAACCAAGAAGACAAAGAGCTATCGATATACCTAAGGATGATGTTAGAAAAGAC 1302
||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||
Sbjct 1229 AACAGGGAACCAAGAAGACCAAGAGCTATGGATATACCTAAGGATGATGATAGAAAACAC 1288
Query 1303 CTCTTCAAAGCTCGGCCTCTTAACAAGAAGATACTTTCAAGTGGACGAGAGATTGGCATG 1362
|||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1289 CTCTTCAAAGCTCGGCCTCTTAACAATAAGATACTTTCAAGTGGGCGAGACATTGGCATT 1348
Query 1363 TTCACAAAAAGCAAGCGAGAAACTACAGCTCCCTTGGGGTTTAGTTTTCACTCGGAAAGG 1422
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 TTCGGAAAAAGCAAGCGAGAAACTACAGCTCCCTTGGGGTTTAGTTTTCACTCGGAAAGG 1408
Query 1423 ACGGCTCAACCAGATTTGCCAACAGACCTTTTCAGTAAGCTCTCTTTATCATCCGAACTC 1482
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 AGGGCTCAACCAGATTTGCCAACAGACCTTTTCAGTAAGCTCTCTTTATCATCCGAACTC 1468
Query 1483 CGGCCAAACAATGGTTCTCGCTTAAGATTTCCTCAGCCTGAACAAGTAAAGGGCTCAAAG 1542
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1469 CGGCCTAACAATGGTTCTCGCTTAAGATTTCCTCAGCCTGAACAAGTAAAGGTCTCAAAG 1528
Query 1543 GAAAATAGATTGAACTCCTTTCAAGCAGGGAATGAAAGAACAAGCAAGTTTATGGGAAAC 1602
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1529 GAAAATAGACTGAACTCCTTTCAAGCAGGGAATGAAAGAACAAGCAAGTTTACCGGAAAA 1588
Query 1603 CCAATGGTACAACCCAGTGTAGTTCCTGAAACTAGCCGGCAATGGACTTCTCGGAGTGGT 1662
|| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1589 CCGATGGTACAACACGGTGTAGTTCCTGAAACTAGCCGGCAATGGACTTCTAGGAGTGGT 1648
Query 1663 AAGCTCGAAGCAACGGTGCAACTAAATTAACAGGAGCTTAGGTGTTCTAGCTGATCGTAG 1722
||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 1649 AAGCTCGAAGCAACGGTGCAACTAAATTAACAGGAGCGTAGGTATTCTCGCTGATCGTAG 1708
Query 1723 AAAAGAAAATCCGTAGTTATATGAGTCATCTCCATT-TTTGTACATTAAGACTTGGTTCT 1781
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1709 AAAAGAAAATCCTTAGTTATATGAATCATCTCCATTATTTGTACATTAAGACTTGGTTCT 1768
Query 1782 CTTAGGTGACAACTATTCAAAAAGAAGGTTAACATTATGAAGAACTAAAAATATCTAGTC 1841
|||||||||||||||||||||||||||| ||||||| ||||||||||||| | || |||
Sbjct 1769 CTTAGGTGACAACTATTCAAAAAGAAGGCTAACATTTTGAAGAACTAAAA-T--CT-GTC 1824
Query 1842 TCTCAAGGAGTGTGGTGTGACATTGTGGTCGA 1873
|||||||| |||||||||||||||||||||||
Sbjct 1825 TCTCAAGGGGTGTGGTGTGACATTGTGGTCGA 1856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71876292315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5