BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12020.2
Length=5867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895406 jgi|Araly1|895406|Al_scaffold_0006_3402 3223 0.0
Ahg489755 jgi|Araly1|489755|fgenesh2_kg.6__2889__AT4G08500.1 928 0.0
Ahg942638 jgi|Araly1|942638|scaffold_603182.1 848 0.0
Ahg471557 jgi|Araly1|471557|fgenesh2_kg.1__1511__AT1G13960.1 771 0.0
Ahg474940 jgi|Araly1|474940|fgenesh2_kg.2__70__AT1G64142.1 429 1e-118
Ahg916062 jgi|Araly1|916062|Al_scaffold_0008_813 372 2e-101
Ahg925075 jgi|Araly1|925075|scaffold_200636.1 274 5e-72
> Ahg895406 jgi|Araly1|895406|Al_scaffold_0006_3402
Length=2562
Score = 3223 bits (1745), Expect = 0.0
Identities = 2186/2398 (91%), Gaps = 34/2398 (1%)
Strand=Plus/Plus
Query 1984 TTTTCCT-CCTCTAAAGATTATGATGTCGTAATCAGATACGGAAGAGCAGA-TATAAGCA 2041
|||| || ||||| ||||||||||||| |||||||||||| |||||| || | || |
Sbjct 67 TTTT-CTGCCTCTGAAGATTATGATGTTGTAATCAGATACAGAAGAGGGGACCA-AATCG 124
Query 2042 ATGAGGATTTCATTAGCCATCTTCGTGCTTCCCTCTGCCGGAGAGGGATTTCTGTCTATG 2101
| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 125 ACGATGATTTCATTAGCCATCTTCGTGCTGCCCTTTGCCGGAGAGGGATTTCTGTCTAT- 183
Query 2102 AA-AAATTTAATGAAGTGGATGCACTTCCAAAATGTAGGGTTTTGATTATAGTATTAACA 2160
|| ||||| |||||||||||||| ||||||||||||| ||||| || ||| | ||||||
Sbjct 184 AACGAATTTGATGAAGTGGATGCAGTTCCAAAATGTAGAGTTTTTATCATATTGTTAACA 243
Query 2161 AGCACATATGTCCCTTCGAACCTCTTAAACATTCTTGAACACCAACATACAGAGGATCGA 2220
|||||||||||||| || ||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 244 AGCACATATGTCCCGTCAAACCTCTTAAACATTCTTGAACACCAACAAACAGAGTATCAA 303
Query 2221 GTGGTTTATCCAAT-TTTCTACAGACTATCACCATATGATTTTGTCTGTAACAGCAAGAA 2279
| |||||||||||| ||| ||||||||||||||||| ||||| || |||||||||||||
Sbjct 304 GCGGTTTATCCAATCTTT-TACAGACTATCACCATACGATTTAATCAGTAACAGCAAGAA 362
Query 2280 TTATGAGAGAT-TTTATCTCCAAGATGAGCCaaaaaaaTGGCAAGCTGCTTTGAAGGAAA 2338
|||||| |||| ||| ||||||| | || ||| ||| ||||| ||||||||||||||||
Sbjct 363 TTATGAAAGATATTT-TCTCCAAAACGAACCAGAAAGGTGGCAGGCTGCTTTGAAGGAAA 421
Query 2339 TAACTCAGATGCCTGGCTACACATTGACAGATAAGTCTGAATCTGAACTTATAGATGAGA 2398
|| ||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 422 TATCTCAGATGCCTGGATACACGTTGACAGATAGGTCCGAATCTGAACTTATAGATGAGA 481
Query 2399 TTGTAAGAGATGCTTTAAAGGTGCTATGTTCTGCTGATAAGGTGAACATGATTGGGATGG 2458
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 482 TTGTAAGAGATGCTTTGAAGGTGCTATGTTCTGGTGATAAGGTGAACATGATTGGGATGG 541
Query 2459 ATATGCAAGTAGAGGAGATTTTGTCACTGCTATGCATTGAGTCCCTTGATGTTCGCAGCA 2518
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 542 ATATACAAGTAGAGGAGATTTTGTCACTGCTATGCATTGAGTCCCTAGATGTTCGCAGCA 601
Query 2519 TTGGTATATGGGGTACAGTTGGTATAGGAAAAACAACCATTGCTGAAGAGATCTTTCGCA 2578
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TAGGTATATGGGGTACGGTTGGTATAGGAAAAACAACCATTGCTGAAGAGATCTTTCGCA 661
Query 2579 AAATCTCTGTCCAATATGAGACCTGTGTCGTCCTTAAGGACCTCCACAAAGAAGTTGAGG 2638
||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |
Sbjct 662 GAATCTCTGTCCAATATGAGACTTGTGTCTTCCTTAAAGACCTCCACAAAGAAGTTGAAG 721
Query 2639 TAAAAGGTCACGATGCTGTGAGAGAGAATTTTCTGTCTGAAGTTTTAGAGGTAGAACCTC 2698
||||||||||||| |||||||||||| ||||| ||||| |||| ||||||||||||||||
Sbjct 722 TAAAAGGTCACGAGGCTGTGAGAGAGGATTTTTTGTCTAAAGTCTTAGAGGTAGAACCTC 781
Query 2699 ATGTTATCCGGATATCTGACATTAAAACAAGCTTCTTG-AGAAGTCGGCTTCAGCGTAAA 2757
||||||| ||||| || ||||||||||| || |||||| || ||||||||||||||||||
Sbjct 782 ATGTTATTCGGATTTCCGACATTAAAACTAGTTTCTTGAAG-AGTCGGCTTCAGCGTAAA 840
Query 2758 AGGATCCTTGTTATTCTTGACGATGTGAATGATTACAGAGATGTTGACACCTTTTTGGGG 2817
||| ||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 841 AGGGTCCTTGTCATTCTGGACGATGTGAATGATTATAGAGATGTTGGCACCTTTTTGGGG 900
Query 2818 ACGCTTAACTATTTTGGTCCAGGAAGCAGAATAATCATGACCTCTAGAAATAGACGTGTT 2877
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 AAGCTTAACTATTTTGGTCCAGGAAGCAGAATAATCATGACCTCAAGAAATAGACGTGTT 960
Query 2878 TTCGTACTATGTAAAATCGATCATGTCTATGAGGTTAAGCCATTAGATATTCCTAAGTCT 2937
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 961 TTTGTACTATGTAAAATCGATCATGTCTATGAGGTCAAGCCATTAGATATTCCTACGTCT 1020
Query 2938 CTACTACTTCTTGATCGTGGGACATGTCAAATTGTTTTGTCACCTGAGGTTTACAAGACA 2997
||| |||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1021 GTACGACTTCTCGATCGTGGGATATTTCAAATTGTTTTGTCACCTGAGGTTTACAAGACA 1080
Query 2998 TTGTCACTTGAGCTGGTCAAATTTTCAAATGGAAATCCCCAGGTTCTTCAGTTCTTGAGC 3057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTGTCACTTGAGCTGGTCAAATTTTCAAATGGAAATCCCCAGGTTCTTCAGTTCTTGAGC 1140
Query 3058 AGTATTGACAGAGAATGGAATAAGTTATCACAAGAAGTTAAGACAACATCTCCCATTTAC 3117
|||||||| |||||| |||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1141 AGTATTGATAGAGAAAGGAATAGGTTATCACAAGAAGTTAAGACAACATCACCCATTTAC 1200
Query 3118 ATCCCAGGTATATTTGAAAAGAGCTGTTGTGGGCTTGATGACAACGAGAGGGGTATATTT 3177
|| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1201 ATTCCAGGTATATTTGAAAGGAGCTGTTGTGGGCTTGATGACAACGAGAGGAGTATATTT 1260
Query 3178 TTGGACATTGCATGTTTCTTTAATAGGATTGATAAAGACAATGTCGCAATGTTGCTGGAT 3237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1261 TTGGACATTGCATGTTTCTTTAATAGGATGGATAAAGACAATGTCGCAATGTTGCTGGAT 1320
Query 3238 GGTTGTGGTTTCTCTGCACATGTCGGATTTAGAGGCCTTGTTGACAAATCACTGTTGACA 3297
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1321 GGTTGTGGTTTCTCCGCACATGTCGGATTTAGAAGCCTTGTTGACAAATCACTGTTAACA 1380
Query 3298 ATATCACAACACAACTTGGTGGACATGCTCAGTTTTATCCAGGCAACTGGTCGAGAAATT 3357
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ATATCGCAACACAACTTCGTGGACATGCTCAGTTTTATCCAGGCAACTGGTCGAGAAATT 1440
Query 3358 GTTCGCCAAGAATCAGCTGACAGACCAGGAGACCGCAGCAGGTTGTGGAATGCCGACTAT 3417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1441 GTTCGCCAAGAATCAGCTGACAGACCAGGAGACCGCAGCAGGTTGTGGAATGCCGAAGAT 1500
Query 3418 ATCAGACACGTATTCATAAATGACACTGGCACATCAGCTATTGAGGGCATTTTCCTAGAC 3477
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 ATCAGGGATGTATTCATAAATGACACTGGCACATCAGCTATTGAGGGCATTTTCCTAGAC 1560
Query 3478 ATGTTGAATCTTAAATTTGATGCAAATCCCAACGTGTTCGAGAAAATGTGTAACCTTAGA 3537
|||| ||| | | |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1561 ATGTCGAAGCAGACATTTGATGCAAATCCCAATGTATTCGAGAAAATGTGTAACCTTAGA 1620
Query 3538 CTGTTGAAATTGTATTGCTCCAAAGCGGAAGAGAAGCATGGAGTATCTTTTCCACAAGGT 3597
||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct 1621 CTGTTGAAATTGTATTGCTCCAAAGTGGAAGAGAAGCATGGAGTATATTTTCCTCAAGGT 1680
Query 3598 CTTGAATATTTGCCGAGCAAGCTAAGGCTTCTCCATTGGGAATATTATCCTCTAAGTTCT 3657
||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 1681 ATTGAATATTTGCCAAGCAAGCTAAGGCTTCTCCATTGGGAATTTTATCCTTTAAGCTCC 1740
Query 3658 TTGCC-GAAAAGTTTTAATCCAGAGAACCTTGTCGAGCTTAACTTGCCAAGTAGCTGTGC 3716
||||| |||| |||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1741 TTGCCAGAAA-GTTTTAATCCAGAGAATCTTGTAGAGCTTAACTTATCAAGTAGCTGTGC 1799
Query 3717 AAAGAAACTTTGGAAAGGAAAAAAGGCAAGGTTTTGTACAACCAATTCAAGTCTGGAAAA 3776
||||||||||||||||||||||||||||||||||| | | |||||| ||
Sbjct 1800 AAAGAAACTTTGGAAAGGAAAAAAGGCAAGGTTTT-TG-A----------GTCTGGGGAA 1847
Query 3777 GCTTAAAAAGATGAGACTTAGCTACTCCGACCAGTTAACTAAAATCCCAAGACTTTCAAG 3836
||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 1848 CCTTAAAAAGATGATACTTAGCTACTCCTACCAGTTAACAAAAATCCCACGACTTTCAAG 1907
Query 3837 CGCAACAAATCTTGAGCATATTGATCTTGAAGGTTGCAACAGTTTGTTGAGCCTTAGCCA 3896
|| | ||||||||||||||||||||||||||||| ||||| ||||||| | |||||||
Sbjct 1908 TGCGCCGAATCTTGAGCATATTGATCTTGAAGGTTGTAACAGCTTGTTGAACATTAGCCA 1967
Query 3897 GTCCATTTCTTATCTTAAGAAGCTTGTTTTTCTGAATTTAAAGGGCTGCTCGAAGCTGGA 3956
|||| |||||||||| || ||| |||||||| | ||||||||||||||||||||||||||
Sbjct 1968 GTCCGTTTCTTATCTCAAAAAGATTGTTTTTTTAAATTTAAAGGGCTGCTCGAAGCTGGA 2027
Query 3957 GAATATTCCATCTATGGTTGATTTAGAATCGCTTGAGGTTCTAAATCTTTCGGGTTGTTC 4016
|| ||||||||||| |||||||||||||| ||||||||||| |||||||| || || ||
Sbjct 2028 GAGTATTCCATCTACAGTTGATTTAGAATCTCTTGAGGTTCTGAATCTTTCTGGCTGCTC 2087
Query 4017 AAAGCTAGGGAACTTCCCGGAGATCTCACCAAATGTGAAAGAACTGTACATGGGTGGGAC 4076
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 AAAGCTAGAGAATTTCCCGGAGATCTCACCAAATGTGAAAGAACTGTACATGGGTGGGAC 2147
Query 4077 TATGATACAAGAAATCCCGTCATCGATTAAGAA-CTTGGTATTGCTTGAGAAA-CTGGAC 4134
||||||||||||||||||||| ||||| ||||| || |||||||||||| ||| ||||||
Sbjct 2148 TATGATACAAGAAATCCCGTCTTCGATCAAGAATCT-GGTATTGCTTGA-AAAGCTGGAC 2205
Query 4135 CTGGAAAACAGTAGACATCTCAAGAATCTTCCAACAAGCATCTACAAGTTGAAGCATCTT 4194
||||||||||| ||||| || ||||||||| |||| ||||||| |||||| |||||||||
Sbjct 2206 CTGGAAAACAGCAGACACCTTAAGAATCTTACAACCAGCATCTGCAAGTTAAAGCATCTT 2265
Query 4195 GAAACTCTAAATCTTTCAGGCTGCATAAGCCTGGAGCGATTTCCAGACTCGTCGAGAAGG 4254
|||||||| ||||| |||||||||| |||||||||||| ||||| |||| ||||||||||
Sbjct 2266 GAAACTCTGAATCTGTCAGGCTGCACAAGCCTGGAGCGGTTTCCGGACTTGTCGAGAAGG 2325
Query 4255 ATGAAATGCTTAAGGTTTTTGGATTTAAGCAGGACAGACATTAAAGAGCTGCCCTCTTCC 4314
|||||||| ||||||||| |||||||||||||||||| | ||| |||||| ||||| |||
Sbjct 2326 ATGAAATGTTTAAGGTTTCTGGATTTAAGCAGGACAGCCGTTAGAGAGCTACCCTCCTCC 2385
Query 4315 ATATCGTATCTGACTGCTCTTGACGAACT-ATTATTCGTAGACTCCAGGAGAAACTCG 4371
|| |||||||| ||||||||||| ||||| | ||| ||||||| || |||| ||||
Sbjct 2386 ATTTCGTATCTTACTGCTCTTGAAGAACTGAG-ATTTGTAGACTGCA--AGAACCTCG 2440
> Ahg489755 jgi|Araly1|489755|fgenesh2_kg.6__2889__AT4G08500.1
Length=2479
Score = 928 bits (502), Expect = 0.0
Identities = 867/1036 (84%), Gaps = 54/1036 (5%)
Strand=Plus/Plus
Query 4714 GAAGCCAGGGAAGAGGAAGTGGAAACGGAAGAGACGGGAGCTATGTTTATCCCA-TTGGG 4772
||||| | |||||||||||||||||||||||||| |||||||| |||| | || |||||
Sbjct 1108 GAAGCTAAGGAAGAGGAAGTGGAAACGGAAGAGATGGGAGCTAGGTTTGT-TCAGTTGGG 1166
Query 4773 GGATA-AG--GA-GA--CATGCTCATTCACTGTAAACAAGGGTGACTCCTCAAGGACAAT 4826
||||| | || || |||||||||||||| |||| |||||||||| ||||| ||| |
Sbjct 1167 GGATACGGCTGACGAGGCATGCTCATTCACTACAAACGAGGGTGACTCGTCAAGCACAGT 1226
Query 4827 ATCTAATACGTCGCCGATTTATGCCT-CCGAAGGATCTTTCATCACGTGTTGGCAGAAGG 4885
||| ||||| ||||| || ||| ||| | ||||||| |||| |||| |||||||||||
Sbjct 1227 ATCCAATACTTCGCCTATCTAT-CCTGATGGAGGATCTATCATTACGTCTTGGCAGAAGG 1285
Query 4886 GTCAACTTCTGGGACGAGGATCATTAGGGTCCGTATATGAAGGCATTTCAGCAGACGGGG 4945
||||||||||||||||||||||||| || || || |||||||||||||||| ||| ||||
Sbjct 1286 GTCAACTTCTGGGACGAGGATCATTTGGTTCTGTGTATGAAGGCATTTCAGGAGATGGGG 1345
Query 4946 ACTTCTTTGCTTTCAAGGAAGTTTCACTACTTGATCAGGGAAGTCAGGCACATGAATGGA 5005
||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 1346 ACTTCTTTGCTGTCAAGGAAGTTTCACTTCTTGATCAGGGAAGTCAGGCACAAGAATGCA 1405
Query 5006 TACAACAAGTCGAgggggggATTGCGCTACTTAGTCAGCTTCAGCATCAGAATATCGTGC 5065
|||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| ||||
Sbjct 1406 TACAACAACTTGAGGGGGAGATTGCATTACTTTGTCAGCTTCAGCATCAGAATATTGTGC 1465
Query 5066 GATATCGTGGCACAACTAAGGACGAGTCGAATTTGTACATTTTTCTTGAACTTGTAACCC 5125
|||||||||| ||| | ||||||| ||| |||||||||||||||||||| ||||||||||
Sbjct 1466 GATATCGTGGTACAGCCAAGGACGGGTCAAATTTGTACATTTTTCTTGAGCTTGTAACCC 1525
Query 5126 AAGGG-TCCCTTCGAAAACTCTACCAAAGAAACCAGCTTGGGGACTCTGTAGTCTCCTTA 5184
| ||| ||||||| |||||||||||||||| | |||||| ||||||||||||| |||||
Sbjct 1526 A-GGGCTCCCTTCTAAAACTCTACCAAAGATATCAGCTTCGGGACTCTGTAGTTTCCTTG 1584
Query 5185 TACACAAGACAGATTCTTGATGGATTGAAATATCTCCACGATAAAGGTTTTATACACAGG 5244
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1585 TACACAAGACAGATTCTTGACGGTTTGAAATATCTCCACGATAAAGGTTTTATTCACAGG 1644
Query 5245 AACATTAAATGTGCAAATGTATTGGTGGACGCTAATGGAACAGTTAAACTTGCAGATTTT 5304
|||| |||||||| ||| ||||||||||||||||||| | || |||||||||||||||
Sbjct 1645 GACATCAAATGTGCCAATATATTGGTGGACGCTAATGGCGCCGTCAAACTTGCAGATTTT 1704
Query 5305 GGATTGGCTAAGGT----AATGTCCCTCTGGCG--AACTCC-GTATTGGAA-T---T--- 5350
|||||||| ||||| || || | | | | || ||| | | |||| | |
Sbjct 1705 GGATTGGCAAAGGTGTCGAA-GTTCAAC-GACATTAAGTCCTGCAAGGGAACTCCATTTT 1762
Query 5351 GGATGGCTCCAGAGGTTATTCTTAACCCGAAGGATTA-TGATGGTTATGGAACTCCAGCT 5409
|||||||||||||||||||| |||| ||||||| | |||||| ||||||| |||||||
Sbjct 1763 GGATGGCTCCAGAGGTTATT---AACCGGAAGGAT-AGTGATGGGTATGGAAGTCCAGCT 1818
Query 5410 GATATATGGAGCCTTGGGTGTACTGTGCTAGAAATGT-TGACTGGTCAGATTCCCTACTC 5468
||||| |||||||||||||| ||||| || ||||||| | ||||| |||| ||||||||
Sbjct 1819 GATATTTGGAGCCTTGGGTGCACTGTACTGGAAATGTGT-ACTGGGAAGATCCCCTACTC 1877
Query 5469 CGATCTGGAAATCGGTACA-GCCTTGTATAACATTGGAACGGGTAAGCTTCCGAAAATAC 5527
|||||| ||| || | || ||| ||| || || |||| ||||| ||||||| || |||
Sbjct 1878 CGATCTAGAACCCGTT-CAAGCCCTGTTTAGGATCGGAAGGGGTACGCTTCCGGAAGTAC 1936
Query 5528 CTGATATTCT-ATCGCTAGACGCCCGGGATTTCATACTTACGTGTCTCAAAGTGAACCCG 5586
|||||| || || || ||||| ||| | |||||||||| |||||||||||||||||||
Sbjct 1937 CTGATAC-CTTATTACTGGACGCTCGGCAATTCATACTTAAGTGTCTCAAAGTGAACCCG 1995
Query 5587 GAAGAGCGGCCAACTGCAGCTGAGCTGCTTAACCATCCATTTGTGA-ATATGCCATTACC 5645
||||||||||||||||||||||| || || |||||||||||||||| | | ||| |||||
Sbjct 1996 GAAGAGCGGCCAACTGCAGCTGAACTACTGAACCATCCATTTGTGAGA-AGGCCCTTACC 2054
Query 5646 ATCC-TCGGGCTCAGG----T-----TCAGTATCTTCGCTCCTCCGTGGATGAGGCTAAT 5695
|||| | ||||||||| | |||| |||| |||| |||||| ||||| ||||||
Sbjct 2055 ATCCAT-GGGCTCAGGAGGCTCGGGATCAGCATCTCCGCTACTCCGTAGATGAAGCTAAT 2113
Query 5696 TTTAG-AAGATTGCCT 5710
||||| || | |||||
Sbjct 2114 TTTAGTAA-ACTGCCT 2128
> Ahg942638 jgi|Araly1|942638|scaffold_603182.1
Length=2386
Score = 848 bits (459), Expect = 0.0
Identities = 849/1031 (82%), Gaps = 52/1031 (5%)
Strand=Plus/Plus
Query 4714 GAAGCCAGGGAAGAGGAAGTGGAAACGGAAGAGACGGGAGCTATGTTTATCCCATTGGGG 4773
|||||| |||| || |||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1373 GAAGCCGGGGATGAAAAAGTGGAAACGGAAGAGACGGGAGATATGTTTATCCAAATGGAT 1432
Query 4774 GATA--A--G--GAGACATGCTCATTCACTGTAAACAAGGGTGACTCCTCAAGGACAATA 4827
|||| | | ||| |||||||||||||| ||| || ||||||||||||| || ||
Sbjct 1433 GATACGACTGATGAGGCATGCTCATTCACTACAAATGAGTGTGACTCCTCAAGTTCAGTA 1492
Query 4828 TCTAATACGTCGCCGATTTATGCCTCCGAAGGATCTTTC-ATCACGTGTTGGCAGAAGGG 4886
|| ||||| ||||||||||||| ||| | ||||||| || || || | |||||| |||||
Sbjct 1493 TCCAATACCTCGCCGATTTATGTCTCTGGAGGATCTATCAAT-ACTTCTTGGCAAAAGGG 1551
Query 4887 TCAACTTCTGGGACGAGGATCATTAGGGTCCGTATATGAAGGCATTTCAGCAGACGGGGA 4946
|||||||||| ||||||||||||| || || || ||||||| |||||||| ||| |||
Sbjct 1552 TCAACTTCTGCGACGAGGATCATTTGGCTCTGTGTATGAAGCCATTTCAGAAGATGGGCT 1611
Query 4947 CTTCTTTGCTTTCAAGGAAGTTTCACTACTT-GATCAGGGAAGTCAGGCACATGAATGGA 5005
||||||| || || ||||||||||||| || |||||||||||||||||||| ||||| |
Sbjct 1612 CTTCTTTTCTGTCGAGGAAGTTTCACT-TTTAGATCAGGGAAGTCAGGCACAAGAATGCA 1670
Query 5006 TACAACAAGTCGAgggggggA-TTGCGCTACTTAGTCAGCTTCAGCATCAGAATA-TCGT 5063
|||||||| | || ||||| | |||| ||||||||||||||| |||||| ||||| || |
Sbjct 1671 TACAACAACTTGA-GGGGGAAGTTGCACTACTTAGTCAGCTTGAGCATCGGAATATTC-T 1728
Query 5064 GCGATATCGTGGCACA-ACTAAGGACGAGTCGAATTTGTACATTTTTCTTGAACTTGTAA 5122
|||||| ||||||||| || ||||||| ||| ||||||||||| |||||||| |||||||
Sbjct 1729 GCGATACCGTGGCACAGAC-AAGGACGGGTCAAATTTGTACATCTTTCTTGAGCTTGTAA 1787
Query 5123 CCCAAGGGTCCCTTCGAAAACTCTACCAAAGAAACCAGCTTGGGGACTCTGTAGTCTCCT 5182
||||||| ||||||| |||||||||||||||| |||||||| |||| |||||||| || |
Sbjct 1788 CCCAAGGATCCCTTCTAAAACTCTACCAAAGATACCAGCTTCGGGAATCTGTAGTGTCTT 1847
Query 5183 TATACACAAGACAGATTCTTGATGGATTGAAATATCTCCACGATAAAGGTTTTATACACA 5242
| ||||||| |||||||||||| || ||||||||||| ||||||||||| ||| | ||||
Sbjct 1848 TGTACACAAAACAGATTCTTGACGGCTTGAAATATCTTCACGATAAAGGCTTTGTTCACA 1907
Query 5243 GGAACATTAAATGTGCAAATGTATTGGTGGACGCTAATGGAACAGTTAAACTTGCAGATT 5302
|| |||| |||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1908 GGGACATCAAATGTGCAAATGTATTGGTGGACGCTAATGGCACCGTCAAACTTGCAGATT 1967
Query 5303 TTGGATTGGCTAAGGT----AATGTCCCTCTGGC-G-AACTCC-GTATTGGAA-T---T- 5350
|||||||||| ||||| || || | | | | || ||| | | |||| | |
Sbjct 1968 TTGGATTGGCAAAGGTGTCCAA-GTTAAAC-GACAGTAAATCCTGCAAGGGAACTCCATT 2025
Query 5351 --GGATGGCTCCAGAGGTTATTCTTAACCCGAAGGAT--T-ATGATGGTTATGGAACTCC 5405
|||||||||| ||||||||| ||||| |||| | | ||||||| ||||||| |||
Sbjct 2026 TTGGATGGCTCCGGAGGTTATT---AACCCCAAGGGTAATGATGATGGCTATGGAAGTCC 2082
Query 5406 AGCTGATATATGGAGCCTTGGGTGTACTGTGCTAGAAATGT-TGACTGGTCAGATTCCCT 5464
||||||||||||||||||||| || |||||||||||||||| | || ||||| || ||||
Sbjct 2083 AGCTGATATATGGAGCCTTGGTTGCACTGTGCTAGAAATGTGT-ACCGGTCATATCCCCT 2141
Query 5465 ACTCC-GATCTGGAA-ATCGGTACA-GCCTTGTATAAC-ATTGGAACGGGTAAGCTTCC- 5519
||| | ||| || | | || || ||| | || | || | || ||||| ||||||
Sbjct 2142 ACTTTAG-TCT--AACACCCGTTCAAGCCCAG-ATTAGGATCGAAAGGGGTACGCTTCCA 2197
Query 5520 GAAAATACCTGATATTCTATCGCTAGACGCCCGGGATTTCATACTTACGTGTCTCAAAGT 5579
|| | ||||||||| ||||| |||||| || || ||||||||| |||| |||||||||||
Sbjct 2198 GACA-TACCTGATACTCTATTGCTAGATGCTCGAGATTTCATAGTTACATGTCTCAAAGT 2256
Query 5580 GAACCCGGAAGAGCGGCCAACTGCAGCTGAGCTGCTTAACCATCCATTTGTGA-ATATGC 5638
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||| | | ||
Sbjct 2257 GAACCCCGAAGAGCGGCCAACTGCAGCTGAACTGCTGAACCATCCATTTGTGAGA-AGGC 2315
Query 5639 CATTACCATCCTCGGGCTCAGGTTCAGTATCTTCGCTCCTCCGTGGATGAGGCTAATTTT 5698
| |||||||| ||||||||||| |||| |||| |||| |||| |||||| ||||||||
Sbjct 2316 CCTTACCATCGTCGGGCTCAGGATCAGCATCTCCGCTTATCCGCAGATGAGTCTAATTTT 2375
Query 5699 AGAAGATTGCC 5709
|| ||||||||
Sbjct 2376 AGTAGATTGCC 2386
> Ahg471557 jgi|Araly1|471557|fgenesh2_kg.1__1511__AT1G13960.1
Length=1886
Score = 771 bits (417), Expect = 0.0
Identities = 691/815 (85%), Gaps = 52/815 (6%)
Strand=Plus/Plus
Query 1201 GCTCAAACAGTTCAAGCCAATGCCAATATGCAACCTCAAACTGAGTACCCTTCTTCCTCT 1260
|||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 497 GCTCAAGCAGTTCAAGCCAATGCCAATATGCAACCACAAACCGAGTACCCTCCTTCCTCT 556
Query 1261 GC-GGTTCAATCATTTTCATCGGGTCAACCTCAGATCCCCACCTCAGCTCCGGATTCTTC 1319
| |||||||||||||||||||||||| |||||||||| ||||| ||||| | | |
Sbjct 557 -CAAGTTCAATCATTTTCATCGGGTCAAGCTCAGATCCCGACCTCGGCTCC--A--C-T- 609
Query 1320 ACTACTAGCT-AAA-AGTAATACCTCAGGTATAACTATCATCGAGCACATGTCACAACAG 1377
|| | |||| ||| || || ||||||| | |||| ||||||||||||| ||||||||||
Sbjct 610 AC--C-AGCTCAAAGAG-AA-ACCTCAGATGTAACCATCATCGAGCACAGGTCACAACAG 664
Query 1378 CCTCTAAATGTTGACAAACAAGTTAATGATGGCTATAACTGGC-AAAAGTATGGGCAAAA 1436
||||||||||||||||||| || | |||||||||||||||||| |||| || ||||||||
Sbjct 665 CCTCTAAATGTTGACAAACCAGCTGATGATGGCTATAACTGGCGAAAA-TACGGGCAAAA 723
Query 1437 GAAAGTTAAAGGCAGCAAGTTTCCTCTAAGCTATTACAAGTGCACAT-ATCTAGGATGTC 1495
| |||||||||||||| ||||||||| ||||||||||||||| || | ||| ||||||||
Sbjct 724 GCAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTAC-TAATCCAGGATGTC 782
Query 1496 CT-TCCAAGAGGAAGGTTGAGAGATCTCTTGATGGACAAGTAGCAGAAATCGTCTACAAA 1554
|| | ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 783 CTGT-CAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAAATCGTCTACAAA 841
Query 1555 GATC-GACACAATCACGAACCTCCT-AA--C-C-AAG-GA--AAAGATGG-TAGCACCAC 1604
| || | |||||||| ||||||||| || | | ||| || ||| | | ||||||| |
Sbjct 842 GGTCAG-CACAATCATGAACCTCCTCAAAACACTAAGCGAGGAAACAAAGATAGCACCGC 900
Query 1605 ATATCTAAGTGGGAGTTCGACACACATCAATTGCATGAGCTCTGAATTGACAGCATCACA 1664
| || ||| |||||||||| ||| | |||| || ||| ||||||||| ||||||||
Sbjct 901 AAATATAAATGGGAGTTCGGTACATAACAATCGCGGGAGTTCTGAATTGGGGGCATCACA 960
Query 1665 GTTT-AG-CT-----C-C-AACAAGACTAAGATAGAGCAACAGGAAGCAGCAAGTCTAGC 1715
|||| | || | | ||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 961 GTTTCAAACTAATAACTCCAACAAGACTAAGAGAGAGCAACATGAAGCAGCAAGTCAAGC 1020
Query 1716 TACGACAATAGAGTACATGTCTGAGGCAAGTGACAATGAAGAAGACAGTAATGGAGAAAC 1775
|||||||| |||| || |||||||||||||||||| |||||||| |||||||||||||
Sbjct 1021 TACGACAACAGAGCACTTGTCTGAGGCAAGTGACAGTGAAGAAGTTGGTAATGGAGAAAC 1080
Query 1776 T-A-GTGAGGGAGAGAAAGATGAAGAC-GAGCCTGAACCAAAGAGAAGAATTACAGAAGT 1832
| | ||||| |||||||||||| || |||||||| || ||||||||||||||||||||
Sbjct 1081 TGATGTGAG--AGAGAAAGATGA-GAATGAGCCTGATCCCAAGAGAAGAATTACAGAAGT 1137
Query 1833 TCAGGTTTCGGAACTAGCTG--A-TGCTTCAGATAGAACCGTGAGAGAGCCTAGGGTTAT 1889
|| |||||| |||| ||||| | ||||||| |||||||||||| ||||||| | ||||
Sbjct 1138 TCGGGTTTCAGAACCAGCTGCTACTGCTTCACATAGAACCGTGACAGAGCCTCGAATTAT 1197
Query 1890 TTTCCAAACAACGAGTGAAGTTGATAATT-TAGATGATGGATATAGGTGGCGGAAATATG 1948
| |||||||||| |||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1198 TGTCCAAACAACTAGTGAAGTTGATC-TTCTAGATGATGGATATAGGTGGCGCAAATATG 1256
Query 1949 GACAGAAAGTTGTTAAAGGGAATCCTTATCCAAGG 1983
||||||||||||| ||||||||||||||||| |||
Sbjct 1257 GACAGAAAGTTGTCAAAGGGAATCCTTATCCGAGG 1291
> Ahg474940 jgi|Araly1|474940|fgenesh2_kg.2__70__AT1G64142.1
Length=2716
Score = 429 bits (232), Expect = 1e-118
Identities = 303/338 (90%), Gaps = 2/338 (1%)
Strand=Plus/Plus
Query 247 CAGCTTAATAATTCTTCTAGTTCCAAGTTATGTCAAGTGGAAGGATGTCAAAAAGGAGCA 306
|||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1236 CAGCTTAAGAATTCTTCTAGTTCCAAGTTATGTCAAGTAGAAGGATGTCAGAAGGGAGCA 1295
Query 307 AGAGATGCATCTGGTCGTTGCATTTCCCATGGCGGTGGACGTAGATGCCAGAAACCTGAT 366
|||| |||||||| ||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 1296 AGAGGCGCATCTGGCCGTTGCATTTCCCATGGTGGTGGACGTAGATGCCAGAAACATGGT 1355
Query 367 TGCCAGAAGGGAGCTGAAGGTAAAACAGTGTACTGTAAAGCCCACGGAGGTGGTCG-CAG 425
||||| ||||| ||||||||| ||| ||||||||||||||||| ||||||||||| | |
Sbjct 1356 TGCCACAAGGGCGCTGAAGGTCGAACTGTGTACTGTAAAGCCCATGGAGGTGGTCGTC-G 1414
Query 426 ATGTGAATATCTTGGATGCACCAAAGGCGCAGAAGGCAGTACTGATTTTTGTATAGCTCA 485
|||||||| ||| |||||||||||| ||||||||||| ||||||| ||||||||||| ||
Sbjct 1415 ATGTGAATTTCTCGGATGCACCAAAAGCGCAGAAGGCCGTACTGACTTTTGTATAGCCCA 1474
Query 486 TGGAGGTGGTCGAAGATGCAACCATGAAGATTGCACACGATCTGCTTGGGGAAGAACAGA 545
|||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |||
Sbjct 1475 TGGAGGTGGTCGAAGATGCAGCCATGAAGATTGCACACGAGCTGCTAGGGGAAGATCAGG 1534
Query 546 ATTCTGTGTCAAGCACGGTGGAGGAGCGAGATGCAAAA 583
| ||||| ||| ||||||||||||| ||||||| |||
Sbjct 1535 ACTCTGTATCAGGCACGGTGGAGGAAAGAGATGCCAAA 1572
Score = 324 bits (175), Expect = 5e-87
Identities = 211/229 (92%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 630 AGCCCATGGTGGTGGTAAAAAATGCAGCCATGAAGATTGCACAGGATTTGCTAGGGGAAG 689
||||||||| |||||| || |||||||||||||||||||||| || ||||||||||||
Sbjct 1469 AGCCCATGGAGGTGGTCGAAGATGCAGCCATGAAGATTGCACACGAGCTGCTAGGGGAAG 1528
Query 690 ATCAGGACTCTGTCTCATGCACGGTGGGGGAAAGAGATGCCAAAGAGAGAACTGCACTAA 749
||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1529 ATCAGGACTCTGTATCAGGCACGGTGGAGGAAAGAGATGCCAAAGAGAAAACTGCACTAA 1588
Query 750 AAGCGCTGAAGGTCTTTCGGGACTCTGCATATCCCATGGTGGTGGTCGGCGATGTCAATC 809
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1589 AAGCGCTGAAGGCCTTTCGGGACTCTGCATCTCTCATGGTGGTGGTCGGCGATGTCAATC 1648
Query 810 TATTGGATGCACAAAAGGAGCGAAAGGGAGCAAAATGTTCTGCAAAGCA 858
|| ||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct 1649 TAATGGATGCACAAAAGGAGCGCAAGGGAGCACAATGTTCTGCAAGGCA 1697
> Ahg916062 jgi|Araly1|916062|Al_scaffold_0008_813
Length=828
Score = 372 bits (201), Expect = 2e-101
Identities = 309/358 (86%), Gaps = 19/358 (5%)
Strand=Plus/Plus
Query 1201 GCTCAAACAGTTCAAGCCAATGCCAATATGCAACCTCAAACTGAGTACCCTTCTTCCTCT 1260
|||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 481 GCTCAAGCAGTTCAAGCCAATGCCAATATGCAACCACAAACAGAGTACCCTCCTTCCTCT 540
Query 1261 GC-GGTTCAATCATTTTCATCGGGTCAACCTCAGATCCCCACCTCAGCTCCGGATTCTTC 1319
| |||||||||||||||||||||||| |||||||||| ||||| ||||| | | |
Sbjct 541 -CAAGTTCAATCATTTTCATCGGGTCAAGCTCAGATCCCGACCTCGGCTCC--A--C-T- 593
Query 1320 ACTACTAGCT-AAA-AGTAATACCTCAGGTATAACTATCATCGAGCACATGTCACAACAG 1377
|| | |||| ||| || || |||||| | | || ||||||||||||| ||| |||||
Sbjct 594 AC--C-AGCTCAAAGAG-AA-ACCTCATATGTGACCATCATCGAGCACAGGTCCCAACAC 648
Query 1378 CCTCTAAATGTTGACAAACAAGTTAATGATGGCTATAACTGGCAAAAGTATGGGCAAAAG 1437
||||||||||||||||||| || | ||||||| |||||||||||||| ||||||||||||
Sbjct 649 CCTCTAAATGTTGACAAACCAGCTGATGATGGTTATAACTGGCAAAAATATGGGCAAAAG 708
Query 1438 AAAGTTAAAGGCAGCAAGTTTCCTCTAAGCTATTACAAGTGCACAT-ATCTAGGATGTCC 1496
|||||||||||||| ||||||||| ||||||||||||||| || | ||| |||||||||
Sbjct 709 CAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTAC-TAATCCAGGATGTCC 767
Query 1497 T-TCCAAGAGGAAGGTTGAGAGATCTCTTGATGGACAAGTAGCAGAAATCGTCTACAA 1553
| | ||||| ||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 768 TGT-CAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAAATCATCTACAA 824
> Ahg925075 jgi|Araly1|925075|scaffold_200636.1
Length=3500
Score = 274 bits (148), Expect = 5e-72
Identities = 237/279 (85%), Gaps = 9/279 (3%)
Strand=Plus/Plus
Query 870 AAGGCCTCTAACGATTGATGGAGGAGGAAATATGGGAGGGGTAACAACAGGTGATGCCTT 929
||||||| ||||||||| ||||||||||| || ||||| | ||||||||| || ||| ||
Sbjct 102 AAGGCCTTTAACGATTGGTGGAGGAGGAACTACGGGAGCGCTAACAACAGATGCTGCTTT 161
Query 930 GAAC-TATCTCAAAGCTGTGAAGGACAAGTTTGAAGACAGT---GAGAAATATGACACTT 985
| || |||||||||||||||||||| | |||| | |||| | || |||||||| ||||
Sbjct 162 G-ACATATCTCAAAGCTGTGAAGGATATGTTTCACGACAATAAAGAAAAATATGAGACTT 220
Query 986 TCCTTGAAGTCTTGAATGACTGT-AAA-CATCAGGGAGTTGACACTAGTGGCGTCATAGC 1043
|||||| |||| |||| |||| | ||| | |||| |||||||||||| |||||||||| |
Sbjct 221 TCCTTGGAGTCATGAAGGACT-TCAAAGC-TCAGAGAGTTGACACTAATGGCGTCATAAC 278
Query 1044 CAGATTAAAAGATTTGTTCAAGGGCCATGACGACTTACTTTTGGGTTTTAATACCTACTT 1103
||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 279 AAGAATCAAAGATTTGTTCAAGGGCTATGACGACTTACTTTTGGGTTTTAATACCTTCTT 338
Query 1104 GTCAAAGGAGTACCAAATAACCATTCTGCCCGAGGATGA 1142
| | |||| ||||||||| ||| ||| ||||||||||||
Sbjct 339 GCCGAAGGGGTACCAAATTACCCTTCAGCCCGAGGATGA 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 222256226320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5