BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12030.2
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490020 jgi|Araly1|490020|fgenesh2_kg.6__3154__AT4G12030.2 2084 0.0
> Ahg490020 jgi|Araly1|490020|fgenesh2_kg.6__3154__AT4G12030.2
Length=1513
Score = 2084 bits (1128), Expect = 0.0
Identities = 1347/1452 (93%), Gaps = 17/1452 (1%)
Strand=Plus/Plus
Query 32 TCTCTTTCTCTCTTAAGCCTCAAGAAAGAAAAATGGGTGTGATATCTCCGACTGAAACTC 91
|||||||||||||| || |||||| |||||||||||||||||| ||||||| ||| ||||
Sbjct 1 TCTCTTTCTCTCTTTAGTCTCAAGCAAGAAAAATGGGTGTGATCTCTCCGATTGAGACTC 60
Query 92 TGTTCTTAAAGTCTCAACATCGTCTTCTTCAACCTCGAAACTATTCATACGCACTTGCTT 151
||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| ||
Sbjct 61 TGTTCTTAAAGTCTCAACATCGTCTTCTTCAACCTCGAAACTACTCCTACCCACTTGTTT 120
Query 152 TTCACAGCACTCGACGAGTTGCGAATTTCCCACGC-A-A----CTCATTCTCTTCTCTAG 205
|||||| ||||||||||||||||| ||||||| || | | |||||||||||||||||
Sbjct 121 TTCACAACACTCGACGAGTTGCGACTTTCCCATGCAACAGCTTCTCATTCTCTTCTCTAG 180
Query 206 GATCATGTTCTGTAGATTTTCCACTACGAAGTAACCCGATTTCACAAAATAGCAAGTCAA 265
||||||| |||||||||||||||||||||||||||| |||||| |||||| | |||||||
Sbjct 181 GATCATGCTCTGTAGATTTTCCACTACGAAGTAACCTGATTTCGCAAAATGGAAAGTCAA 240
Query 266 -TTCATCCTTGGCGGAGATATGTATCCGAATCTGACTCAAACGAGCTGTATCATAAGAAG 324
|| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 241 GTT-ATCCTTGGCGGAGATATGTATCCGAATCTGACTCAAACGAGATGTACCATAAGAAG 299
Query 325 GTTTCTTCTATTATGGAAACATTAAAGCAAGCCTACTCTTTTATTCCTCATGGAATTCTG 384
||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 300 GTTTCTTCTATAATGGAAACATTAAAGCAAGCCAACTCTTTTATTCCTCATGCAATTCTC 359
Query 385 TTAAGTACAATATTAGCTCTTGTCTATCCACCTTCTTTCACATGGTTCAAGCCAAGGTAC 444
||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 360 TTAAGTACAATCTTAGCTCTTCTCTATCCACCTTCTTTTACATGGTTCAAGCCAAGGTAC 419
Query 445 TTTGTACCTGGCTTAGGGTTCATGATGTTTGCTGTTGGTATCAACTCTAATGAAAGAGAT 504
||||| ||||| ||||| |||||||||||||| ||||| |||||||| || |||| |||
Sbjct 420 TTTGTGCCTGGTTTAGGTTTCATGATGTTTGCAGTTGGAATCAACTCGAACGAAAAAGAC 479
Query 505 TTTCTTGAAGCACTTAAAAGACCAGATGCTATTTTTGCCGGTTACATCGGACAATACTTG 564
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTCTCGAAGCTCTTAAAAGACCAGATGCTATTTTTGCCGGTTACATCGGACAATACTTG 539
Query 565 ATTAAACCTCTCTTAGGTTACATTTTCGGCGTAATTGCTGTCTCTCTTTTCAATCTACCT 624
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATAAAACCTCTCTTAGGTTACATTTTCGGCGTAATTGCTGTCTCTCTTTTCAATCTACCT 599
Query 625 ACTTCTATAGGTGCTGGAATCATGTTGGTCTCATGTGTTAGTGGAGCTCAGCTATCAAAT 684
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTTCTATAGGTGCTGGAATTATGTTGGTCTCATGTGTTAGTGGAGCTCAGCTATCAAAT 659
Query 685 TACACAACTTTCTTGACCGATCCTTCACTCGCGGCGCTTAGCATCGTCATGACATCTATC 744
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 660 TACACAACTTTCTTGACCGATCCTTCACTCGCGCCGCTTAGCATCGTCATGACATCTGTC 719
Query 745 TCAACGGCCACTGCGGTCCTCGTTACACCTATGCTTTCACTCTTACTCATTGGTAAAAAG 804
||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 720 TCAACCGCTACTGCGGTCCTCGTTACACCCATGCTTTCACTTTTACTCATCGGTAAAAAG 779
Query 805 CTTCCCGTTGATGTGTTTGGGATGATCTCTAGCATTCTTCAAGTGGT-GATTACACCTAT 863
||||||||||||||| |||||||||||||||||||||| ||||| || | ||||||||||
Sbjct 780 CTTCCCGTTGATGTGATTGGGATGATCTCTAGCATTCTCCAAGTCGTAG-TTACACCTAT 838
Query 864 TGCCGCAGGACTACTTCTGAACCGGTTGTTTCCAAGGTTGTCTAATGCAATCAAACCATT 923
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 TGCCGCAGGACTACTTCTTAACCGGTTATTTCCAAGGTTGTCTAATGCAATCAAACCATT 898
Query 924 TCTTCCGGCGTTAACAGTTATCGATATGAG-TTGTTGCATAGGAGCACCCCTTGCTTTGA 982
||| |||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 899 TCTCCCGGCGTTAACAGTTATCGATACG-GCTTGTTGCATAGGAGCACCCCTTGCTTTGA 957
Query 983 ATATAGATTCAATCTTGTCTCCGTTTGGTGCAACCATTTTGTTCCTCGTCATCACGTTTC 1042
| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 958 ACATAGATTCAATCTTGTCTCCGTTTGGTGCAACCATCTTGTTCATCGTCATAACGTTTC 1017
Query 1043 ATCTCTTGGCTTTTGTTGCTGGTTACTTTTTCACTGGTTTCTTCTTCAGCAAGGCACCTG 1102
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATCTCTTGGCTTTCGTCGCTGGTTACTTTTTCACTGGTTTCTTCTTCAGCAAGGCACCTG 1077
Query 1103 ATGTAAAAGCTCTGCAAAGAACAATTTCCTATGAAACAGGAATGCAAAGTAGTCTTCTCG 1162
||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1078 ATGTAAAAGCTCTACAAAGAACAATTTCTTATGAGACCGGAATGCAAAGTAGTCTTCTCG 1137
Query 1163 CTCTGGCCCTCGCTACAAAGTTCTTTCAAGATCCTCTCGTTGGAGTGCCTCCAGCAATCT 1222
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTCTGGCCCTAGCGACAAAGTTCTTTCAAGATCCTCTCGTTGGAGTGCCTCCAGCAATCT 1197
Query 1223 CCACGGTTGTTATGTCTCTAATGGGCGTCTCGCTTGTTACCATATGGAAAAACAGAAAGG 1282
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCACAGTAGTTATGTCTCTAATGGGCGTCTCGCTTGTTACCATATGGAAAAACAGAAAGG 1257
Query 1283 AGTAGTGACATGAAACCTAATCAGGGATTTTGCGGAATTTGCTGTTGTTTATGGTCGGCT 1342
||||||| |||||| |||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 1258 AGTAGTGCCATGAACCCTAATTAGGGATTTTGCAGAATTT-CTGTTGTTTATGGTCGGCT 1316
Query 1343 GTTCCAATTGTTTTCGTAATGATCTGGTTATGTTTTCATATAAAAGAACCAAGAATTTAC 1402
|||| ||||||||| |||||| || | ||||| |||| |||||||||||||||| |||||
Sbjct 1317 GTTCTAATTGTTTTTGTAATGGTCAGTTTATGGTTTCTTATAAAAGAACCAAGAGTTTAC 1376
Query 1403 CCATAAAAAGTTTAAAATG-TTTCCATTTTTGGTTCTTGATTGGTTCTGAGAC-AAACCA 1460
||||||||||||||||| | |||| ||||| | |||||||| |||| | | | ||||||
Sbjct 1377 CCATAAAAAGTTTAAAACGATTTCAATTTT-G-TTCTTGATCGGTTGTTATATTAAACCA 1434
Query 1461 AAACAGAGTCAA 1472
|||||||| |||
Sbjct 1435 AAACAGAGCCAA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5