BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12040.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490023 jgi|Araly1|490023|fgenesh2_kg.6__3157__AT4G12040.2 852 0.0
> Ahg490023 jgi|Araly1|490023|fgenesh2_kg.6__3157__AT4G12040.2
Length=1201
Score = 852 bits (461), Expect = 0.0
Identities = 595/655 (91%), Gaps = 28/655 (4%)
Strand=Plus/Plus
Query 236 TACaaaaaaaaTGGGCTCAGAGGAAAACAACAGCACAAGCTTTCCACCAACAGAGCCAAA 295
||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 574 TACAACGAAAATGGGCTCAGAGCAGAACAACAGCACAAGCTTTCCACCAACAGAGCCAAA 633
Query 296 GCTCTGTGATAACGGATGTGGATTCTTCGGGTCACCATCCAACATGAATCTCTGCTCGAA 355
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 634 GCTCTGTGATAACGGATGCGGATTCTTCGGGTCACCATCCAACATGAATCTGTGTTCGAA 693
Query 356 ATGTTACAGAAGCTTAAGAGCCGAGGAAGATCAAACCGCGGTAGCGAAAGCTGCGGTGAA 415
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 694 ATGTTACAGAAGCTTACGAGCTGAGGAAGATCAAACCGCGGTAGCGAAAGCTGCGGTAAA 753
Query 416 GAACTCTTTAAAGCTTCCATCTTGCAGTATCATTGCACCTGGACAAAAACATCCTCTGGA 475
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 754 GAAGTCTTTAAAGCTTCCATCTTGCAGTATCATTGCACCGGGACAAAAACATCCTCTGGA 813
Query 476 AATTAAACCAGCTCATTTGGAAACCGTTGTTGTAACCGCTGAGCCGTCTTCTGTACCTGT 535
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 814 AATTAAACCAGCGCATTTGGAAACCGTTGTTGTAACCGCTGAGCCGTCTTCGGTACCTGT 873
Query 536 AGCCGCGGAACAGGACGAGGCTGAGCCGTCGAGACCTGTTAGACCGAAC-AACAGGTGTT 594
||| |||||||||||||||||||||| | |||||||| | | ||| | ||||||||||
Sbjct 874 AGCTACGGAACAGGACGAGGCTGAGCCATTGAGACCTG-T--A-CGACCTAACAGGTGTT 929
Query 595 TCAGCTGTAACAAGAAGGTTGGTGTAATGGGGTTTAAGTGCAAATGCGGTAGCACGTTTT 654
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 930 TCAGCTGTAACAAGAAGGTTGGGGTAATGGGTTTTAAGTGCAAATGCGGTAGCACGTTTT 989
Query 655 GCGGGAGTCATAGGTACCCGGAGAAGCATGAGTGTAGCTTCGATTTCAAAGAAGTTGGAC 714
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GCGGGAATCATCGGTACCCGGAGAAGCATGAGTGTAGCTTCGATTTCAAAGAAGTTGGAC 1049
Query 715 GTGATGCAATTGCAAAGGCTAATCCTTTGGTTAAGGCGGATAAAGTTCAGAGGATTTGAA 774
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1050 GTGATGCAATCGCAAAGGCGAATCCTTTGGTTAAGGCGGATAAAGTCCAGAGGATTTGAA 1109
Query 775 GAAAACAAACTTTGTTATTTTTAAGTATTTTCGTTGTCTTCTGCATTTGATCAGTTTCTG 834
|||| | ||| || | || | || || |||||||||||||||||
Sbjct 1110 -AAAA-A---TTTCTT-T------GT-----C-TT--CT---GCATTTGATCAGTTTCTT 1146
Query 835 CCTGGGATGTTCGATGTTTGGTTTCCATGAATCAAAATGAAAATTGCTGTTCTTG 889
|| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 1147 CCGGGGATGTTCGATGTTTGGTTTCCATGAATCAAAATAAAAATTCCTGCTCTTG 1201
Score = 169 bits (91), Expect = 4e-41
Identities = 107/114 (94%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 8 ATTGTTGCGTGTTTGGTTATCTCTTCTTT--CTTCTCTCTCACCTAAATCAAGGGATTTG 65
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1 ATTGTTGCGTGTTTGGTTATCTCTTCTTTTTCTTCTCTCTTACCTAAATCAAGGGATTTG 60
Query 66 TTCTGATCAA-CTTT-GAACAGAATTTACAACAAATCCCTAGAAAAATCTGACC 117
|||||||||| |||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 61 TTCTGATCAAACTTTTGAACAGAATTAACAACAAATCCCTAGAAGAATCTGACC 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5