BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12050.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490024 jgi|Araly1|490024|fgenesh2_kg.6__3158__AT4G12050.1 2183 0.0
Ahg492588 jgi|Araly1|492588|fgenesh2_kg.7__2021__AT4G22810.1 593 9e-169
> Ahg490024 jgi|Araly1|490024|fgenesh2_kg.6__3158__AT4G12050.1
Length=1480
Score = 2183 bits (1182), Expect = 0.0
Identities = 1409/1512 (93%), Gaps = 42/1512 (3%)
Strand=Plus/Plus
Query 3 ACAAGAGTAGAGAGAGAAAATAAA-ACCTTACCAAATCAATCAAAGAATAAGATGAAGAA 61
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ACAAGAGTAGAGAGAGAAAA-AAACCCCTTACCAAATCAATCAAAGAATAAGATGAAGAA 59
Query 62 CAAAATTCCAGCTTGATGTATT-TTGTGAAAACATTATTATTCTTTTCCTCTTCTATCTA 120
||| |||||||||||| | || ||||||||||||| |||||||||||||||||||||||
Sbjct 60 GAAATTTCCAGCTTGATAT-TTGTTGTGAAAACATTTTTATTCTTTTCCTCTTCTATCTA 118
Query 121 GAGTCTCTCCTAGGTCAAATTATCAAAATCAATTCTCATCTCAACATAGAATGGATCCAG 180
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 119 GAGTCTCTCCTAGGTCAAATCATCAAAATCAATTCTCATCTCAACAAAGAATGGATCCAG 178
Query 181 TTCAATCTCATGGATCACAAAGCTCTCTTCCTCCTCCTTTCCATGCTAGAGATTTCCAAT 240
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 179 TTCAATCTCATGGATCACAAAGCTCTCTTCCTCCTCCTTTCCACGCTAGAGACTTCCAAT 238
Query 241 TACATCTTcaacaacaacaacaacatcaacaacaacatcaacaacaacaacaacaacaGT 300
||||||||||||||||||||| | | |||||||||||| ||||||||||| ||||
Sbjct 239 TACATCTTCAACAACAACAAC-A-A-CAACAACAACAT------CAACAACAACAGCAGT 289
Query 301 TCTTTCTCCACCATCATCAGCAACCACAAAGAAACCTTGATCAAGATCACGAGCAGCAAG 360
|||||||||||||||||||||| || || ||||||| |||||||||||| ||||||||||
Sbjct 290 TCTTTCTCCACCATCATCAGCAGCCGCAGAGAAACCCTGATCAAGATCATGAGCAGCAAG 349
Query 361 GAGGGTCAATATTGAATAGATCTATCAAGATGGATCGCGAAGAGACAAGCGATAACATGG 420
||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 350 GAGGGTCAATAATGAATCGATCCATCAAGATGGATCGTGAAGAGACAAGCGATAACATGG 409
Query 421 ACAACATCGCTAATACCAACAGCGGTAGCGAAGGTAAAGAGATGAGTTTACACGGAGGAG 480
||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |
Sbjct 410 ACAACATCGCTAACAACAACAGCGGTAGCGAAGGTAAAGAGATGAGTTTACAC---GG-G 465
Query 481 AAGGAGGAAGCGGTGGTGGAGGAAGTGGAGAACAGATGACAAGAAGGCCAAGAGGAAGAC 540
||| ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 466 --GGA-GAA--------GGAGGAAGCGGAGAACAGATGACAAGAAGGCCAAGAGGAAGAC 514
Query 541 CAGCAGGATCCAAGAACAAACCTAAAGCTCCAATAATCATAACAAGAGACAGCGCAAACG 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 515 CAGCAGGATCCAAGAACAAACCTAAAGCTCCAATAATCATTACAAGAGACAGCGCAAACG 574
Query 601 CGCTTCGAACTCACGTCATGGAGATAGGAGACGGATGTGACATAGTTGACTGTATGGCTA 660
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 575 CGCTTCGAACTCACGTCATGGAGATCGGAGATGGATGTGACATAGTTGACTGTATGGCTA 634
Query 661 CGTTCGCTAGACGCCGCCAAAGAGGCGTTTGCGTTATGAGCGGTACAGGAAGCGTTACTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 635 CGTTCGCTAGACGCCGCCAAAGAGGCGTTTGCGTTATGAGCGGTACAGGAAACGTTACTA 694
Query 721 ACGTCACTATACGTCAGCCTGGATCGCCACCTGGCTCGGTGGTTAGCCTTCACGGCCGGT 780
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 695 ACGTCACGATACGTCAGCCTGGATCGCCACCTGGCTCAGTGGTTAGCCTTCACGGCCGGT 754
Query 781 TTGAAATCCTCTCTCTTTCGGGATCTTTCTTGCCTCCGCCTGCGCCGCCTGCAGCCACCG 840
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 755 TTGAAATCCTCTCTCTTTCCGGATCTTTCTTGCCACCGCCTGCGCCTCCTGCAGCCACTG 814
Query 841 GACTAAGCGTTTACCTAGCCGGAGGACAAGGGCAGGTCGTTGGAGGTAGTGTGGTGGGAC 900
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GACTAAGCGTTTACCTAGCTGGAGGACAAGGGCAGGTCGTTGGAGGTAGTGTGGTGGGAC 874
Query 901 CTTTGTTGTGTTCGGGTCCTGTGGTGGTTATGGCGGCTTCTTTTAGCAATGCGGCGTACG 960
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 875 CTTTGTTGTGTTCGGGTCCTGTAGTGGTTATGGCGGCGTCTTTTAGCAATGCGGCTTACG 934
Query 961 AAAGGCTGCCTTTGGAAGAAGATGAGATGCAGACGCCAGTTCAAGGAGGCGGTGGAGGAG 1020
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 935 AGAGGCTACCTTTGGAAGAAGATGAGATGCAGACGCCAGTTCACGGAGGCGGTGGAGGAG 994
Query 1021 GAGGAGGTGGTGGTGGAATGGGATCTCCCCCGATGATGGGACAGCAACAAGCTATGGCAG 1080
| |||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 995 GTGGAGAAGGAGGTGGAATGGGATCTCCGCCGATGATGGGGCAGCAACAAGCTATGGCAG 1054
Query 1081 CTATGGCGGCGGCTCAAGGACTACCACCGAATCTTCTTGGTTCGGTTCAGTTGCCACCGC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1055 CTATGGCGGCGGCTCAAGGACTACCACCGAATCTTCTTGGTTCGGTTCAGTTGCCGCCGC 1114
Query 1141 CACAACAGAATGATCAGCAGTATTGGTCTACGGGTCGGCCACCGtattgattattagatt 1200
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1115 CACAGCAGAATGATCAGCAGTATTGGTCTACGGGTCGACCACCGTATTGATTATTAGATT 1174
Query 1201 gctattattat-atataca--tgatcaatggaatatatacatatata--gctatgtattt 1255
||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1175 GCTATTATTATTATATACACATGATCAATCGAATATATACATATATATAGCTATGTATTT 1234
Query 1256 gtatatatgtagctatttactaatagatcttacatatatataAAGCAAGCTAACATGGAA 1315
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 GTATATATGTAGCTATCTACTAATAGATCTTACATATATATAAAGCAAGCTAACATGGAA 1294
Query 1316 TCATTAAAAGGAGGTCTACGAAGTATGACGTGAAGTTGAAGACGGCGATAATATTGAAGA 1375
| |||| |||||||| |||||||||||||||||||||||||| |||||| || |||||
Sbjct 1295 TGATTATAAGGAGGTGTACGAAGTATGACGTGAAGTTGAAGATGGCGATGAT---GAAGA 1351
Query 1376 TCAACAATTCAGTAGATGGttttcaggttcttctttgttttttt-t--gtttcctttggg 1432
|||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||| | |
Sbjct 1352 TCAACAATTCAGTAGATG-TTT-CAGGTTCTTCTTTGTTTTTTTGTTTGTTTTCTT-GTG 1408
Query 1433 ttcgttttagtggtagatcttttttttttAATGTTTGATTATGTGAGGTTAATTTAAGTT 1492
||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 1409 TTCGTTTTAGTGGTAGATCTTTTTTCTTAAATGTTTGATTAAGTGAGGTTAATTTAAGTT 1468
Query 1493 GTTATTTACTTT 1504
||| ||||||||
Sbjct 1469 GTTCTTTACTTT 1480
> Ahg492588 jgi|Araly1|492588|fgenesh2_kg.7__2021__AT4G22810.1
Length=1542
Score = 593 bits (321), Expect = 9e-169
Identities = 750/946 (79%), Gaps = 73/946 (8%)
Strand=Plus/Plus
Query 275 acatcaacaacaacaacaacaacaGTTCTTTCTCCACCATCATCAGCAACCACAAAGAAA 334
||||| ||||||||||||||| ||||||| |||||||| || |||| | |||||||||
Sbjct 339 ACATCTCCAACAACAACAACAAGAGTTCTTCCTCCACCACCACCAGC-A--ACAAAGAAA 395
Query 335 CCTTGATCAAGATCACGAGCAGCAAGGAGGGTCAATATTG-AATAGATC-TATCAAGATG 392
|| | | ||| | || || |||||||| ||| | | || || | |||||||||
Sbjct 396 CC--AAAC-CGATGATGATCAACAAGGAGGATCAGGA-GGAAACCGA-CAAATCAAGATG 450
Query 393 GATCGCGAAGAGACAAGCGATAACATGGACAACATCGCTAATACCAACAGCGGTAGCGAA 452
||||| |||||||||| | | |||||||||||| | | |||||||||||| |||
Sbjct 451 GATCGTGAAGAGACAA--G----C---GACAACATCGCT-A-A-CAACAGCGGTAGTGAA 498
Query 453 GGTAAAGAGATGAG-TTTACACGGA------GGAGAAGGAGGAAGCGG-TGGTGGAGGAA 504
||||| || || || |||||||||| ||||||||||| |||| | |||||| |
Sbjct 499 GGTAAGGACAT-AGATTTACACGGAGGTTCGGGAGAAGGAGGCGGCGGCT-CTGGAGG-A 555
Query 505 GTGGA-GAACAGATGACAAGAAGGCCAAGAGGAAGACCAGCAGGATCCAAGAACAAACCT 563
|| | |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 556 ---GATCATCAGATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAGAACAAACCA 612
Query 564 AAAGCTCCAATAATCATAACAAGAGACAGCGCAAACGCGCTTCGAACTCACGTCATGGAG 623
||| | || || ||| | || | |||||||||||||||||| |||| ||||| ||||||
Sbjct 613 AAACCACCGATTATCGTCACGCGGGACAGCGCAAACGCGCTTAGAACCCACGTGATGGAG 672
Query 624 ATAGGAGACGGATGTGA-CATAGTTGACTGTATGGCTACGTTCGCTAGACGCCGCCAAAG 682
|| |||||||||||||| | |||| || | |||| || ||||| ||| | |||||| |
Sbjct 673 ATTGGAGACGGATGTGATC-TAGTCGAGAGCGTGGCCACTTTCGCAAGAAGACGCCAACG 731
Query 683 AGGCGTTTGCGTTATGAGCGGTACAGGAAGCGTTACTAACGTCACTATACGTCAGCCTGG 742
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 732 CGGCGTTTGCGTTATGAGCGGTACTGGAAACGTTACTAACGTCACTATACGTCAGCCTGG 791
Query 743 ATCGC--CA--C-C-TGGCTCGGTGGTTAGCCTTCACGGCCGGTTTGAAATCCTCTCTCT 796
||| | | | | ||||||||| ||||| |||||||| |||| || || ||||||||
Sbjct 792 ATCTCATCCTTCTCCTGGCTCGGTCGTTAGTCTTCACGGAAGGTTCGAGATTCTCTCTCT 851
Query 797 TTCGGGATCTTT-CTTGCCTCCGCCTGCGCCGCCTGCAGCCACCGGACTAAGCGTTTACC 855
|| || ||||| || |||||||| || || ||| ||||||||||| | || |||||||
Sbjct 852 CTCTGGCTCTTTTCTC-CCTCCGCCGGCTCCTCCTACAGCCACCGGATTGAGTGTTTACC 910
Query 856 TAGCCGGAGGACAAGGGCAGGTCGTTGGAGGTAGTGTGGTGGGACCTTTGTTGTGTTCGG 915
| |||||||||||||| || || || || || || ||||| || || ||||||||| | |
Sbjct 911 TCGCCGGAGGACAAGGACAAGTAGTCGGTGGAAGCGTGGTTGGTCCATTGTTGTGTGCTG 970
Query 916 GTCCTGTGGTGGTTATGGCGGCTTCTTTTAGCAATGCGGCGTACGAAAGGCTGCCTTTGG 975
||||||| || |||||||| || ||||||||||||||||||||||| ||| |||| || |
Sbjct 971 GTCCTGTTGTTGTTATGGCTGCGTCTTTTAGCAATGCGGCGTACGAGAGGTTGCCGTTAG 1030
Query 976 AAGAAGATGAGATGCAGACGCCAGTTCAAGGAGGCGGTGGAGGAGGAGGAGGTGGTGGTG 1035
|||||||||||||||||||||| ||||| || ||| |||||||||||||| || |
Sbjct 1031 AAGAAGATGAGATGCAGACGCCGGTTCACGG---CGGAGGAGGAGGAGGAGGAGGA--TC 1085
Query 1036 GAATGG-GATCTCCCCCGATGATGGGACAGCAACAAGCTA--TG-GCA----GCTATGGC 1087
||||| | || || |||||||||||||| |||| || | | ||| |||||| |
Sbjct 1086 -AATGGAG-TCGCCGCCGATGATGGGACAACAACT-GCAACATCAGCAACAAGCTATGTC 1142
Query 1088 GGCGGC-TCAAGGACTACCACCGAATCTTCTTGGTTCGGTTCAGTTGCCACCGCCACAAC 1146
|| | | |||||| ||||||| ||||||||||||||||||||||||| | || | |
Sbjct 1143 GG-GTCATCAAGGGTTACCACCTAATCTTCTTGGTTCGGTTCAGTTGC-A--GC-AG--C 1195
Query 1147 AGAATGATCAG-CAGTATTGGTCTACGGGTCGGCCACCGtattgat 1191
|| |||||||| | |||||||| ||||| || |||||||||||||
Sbjct 1196 AGCATGATCAGTCT-TATTGGTCAACGGGACGACCACCGTATTGAT 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5