BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12060.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943103 jgi|Araly1|943103|scaffold_603647.1 1194 0.0
> Ahg943103 jgi|Araly1|943103|scaffold_603647.1
Length=776
Score = 1194 bits (646), Expect = 0.0
Identities = 737/779 (95%), Gaps = 13/779 (2%)
Strand=Plus/Plus
Query 24 ATCCAGACACACTCGCGAAAATGGCGGCTCACTCTTCTTGCAACTTTGCTTTGACGAATC 83
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCCAGACACATTCGCGAAAATGGCGGCTCACTCTTCTTGCAACTTTGCTTTGACGAATC 60
Query 84 CGATCATCTCACAAATCGATTCTTTCTCTAAGAAGAAACTATCTGTTCCATTATACTTCT 143
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 61 CGATTATCTCACAAATCGATTCTTTCTCTAAGCAGAAACAATCTGTTCCATTATACTTCT 120
Query 144 TCTCTACAAG---------AAAAGCATTGACGAATCCTTGGTTAGGCGTTGTTGATTCAT 194
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 121 TCTCTACAAGAAACCCTCTAAAAGCTTTGACGAATCCATGGTTAGGCGTTGTTGATTCAT 180
Query 195 CCCTCTCTCTCACTTCTCCAGTCTCCGCTCTACAAACTAATCGCCCAAGAAGAATCCATA 254
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 181 CCCTCTCTCTCACTTCTCCAGTCTCCGCTCTACAAAGTACTCGCCGAAGAAGAATCCATA 240
Query 255 AATCCGCCATCTCCAGCTTACCCACCGCGAATCCAGATTTAGTGGTTTCTGATGCGAAAA 314
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 AATCCGTCATCTCCAGCTTACCCACCGCGAATCCAGATTTAGTGGTATCTGATGCGAAAA 300
Query 315 AGCCCAAATGGTCATGGAGGGCAATTAAATCATTTGCAATGGGAGAGCTTGAAGCTAGGA 374
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCCCAAATGGTCATGGAGAGCAATTAAATCATTTGCAATGGGAGAGCTTGAAGCTAGGA 360
Query 375 AGCTCAAGTATCCAAATACTGGAACTGAAGCACTTCTCATGGGTATTTTGATTGAAGGAA 434
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCTCAAGTATCCAAGTACTGGAACTGAAGCACTTCTCATGGGTATTTTGATTGAAGGAA 420
Query 435 CTAGTTTTACTTCAAAGTTTTTGCGGGCGAATAAGATTATGCTTTACAAAGTGCGTGAAG 494
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 421 CTAGTTTTACTTCAAAGTTTTTGCGGGCGAATAAGATAATGCTTTACAAAGTTCGTGAAG 480
Query 495 AAACGGTCAAGTTACTAGGAAAGGCAGATATGTATTTCTTTAGCCCGGAACATCCTCCTT 554
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 481 AAACGATCAAGTTACTAGGAAAGGCAGATATGTATTTCTTTAGCCCCGAACATCCTCCAT 540
Query 555 TAACTGAAGATGCTCAAAGAGCACTTGACTCTGCTCTGGATCAGAATCTAAAAGCAGGTG 614
|||| |||||||||||| ||||||||||||||||| | |||||||||| |||||||||||
Sbjct 541 TAACCGAAGATGCTCAACGAGCACTTGACTCTGCTGTTGATCAGAATCGAAAAGCAGGTG 600
Query 615 GTATCGGGGAAGTAATGCCAGCACATATACTACTTGGGATTTGGTCTGAAGTTGAATCTC 674
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 GTATCGGGGAAGTAATGCCAGCACATATACTACTGGGGATTTGGTCTGAAGTTGAATCTC 660
Query 675 CAGGTCACAAGATACTGGCAACTCTTGGTTTCACTGATGAGAAATCTAAAGAGTTAGAGT 734
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 CAGGTCACAAGATACTAGCAACTCTTGGTTTCACTGATGAAAAATCTAAAGAGTTAGAGT 720
Query 735 CTTTTGCCTCTGA-ATCTGGCTTTTTAGATGAATAGTATATTACATCCATATCATTTCT 792
|||||||||| || |||||| ||| |||||||||||| ||||||||| ||||||||||
Sbjct 721 CTTTTGCCTC-GACATCTGGATTTCTAGATGAATAGTGTATTACATC--TATCATTTCT 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5