BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12070.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490026 jgi|Araly1|490026|fgenesh2_kg.6__3160__AT4G12070.1 2545 0.0
> Ahg490026 jgi|Araly1|490026|fgenesh2_kg.6__3160__AT4G12070.1
Length=1726
Score = 2545 bits (1378), Expect = 0.0
Identities = 1645/1766 (93%), Gaps = 50/1766 (3%)
Strand=Plus/Plus
Query 29 CTCTCTCTCAAAGATTCCGTCTATAGAATCATTTTCACAATTAGAAATCCGAACCCAAAC 88
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 1 CTCTCTCTCAAAGATTCCGTCTATAGAATCATTTTCACAATTAGAAAT-CAAAACCAAAC 59
Query 89 TCATCAAT-TTTACAAAT-TCTCTCT-TATCTCTATGGATCGTACCCACCAACCCGAATC 145
|||| ||| ||| | || ||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 60 TCAT-AATCTTT-C-TATCTCTATCTCTATCTCAATGGATCGTACCCACCAACCCGAATC 116
Query 146 TCCGACGGCCCGACCCGGAAACACCGTGGTCCTCTCAATCGATTGTCTAAAAGGAAGCTC 205
||||| |||||||||||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 117 TCCGA---CCCGACCCGGAAACACGGTGGTCCTCTCCATAGATTGTCTTAAAGGAAGCTC 173
Query 206 TAAAAGCGAAGAATGGAGCGGCGATATGCTTCAAACCGGAGACATAGTAGAAGAGATCCG 265
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 174 CAAAAGCGAAGAATGGAGCGGCGATATGCTTCAAACCGGAGACATAGTGGAAGAGATCCG 233
Query 266 GATCGGGTCAGGACCCGGTTCAGCTATTTTCAAAGCTCCGTTTAAAGGAGGTAAAGCTTG 325
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 234 GATCGGGTCAGGACCCGGTTCGGCTATTTTCAAAGCTCCGTTTAAAGGAGGTAAAGCTTG 293
Query 326 GCTTCAGAAAGTTTTACACAATTCTTTTAGGAATAAAGAAACTTCAATCGTCGTCAGAGT 385
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GCTTCAGAAAGTTCTACACAATTCTTTTAGGAATAAAGAAACTTCAATCGTCGTCAGAGT 353
Query 386 TCGACGTGGCTCCGATGATTTCTCCGATCTGTCTGCTTGTATTGTTCCTAATGAATCCGC 445
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CCGTCGTGGCTCCGATGATTTCTCCGATCTGTCTGCTTGTATTGTTCCTAATGAATCCGC 413
Query 446 CGGGAAGAGACAGTATATGCTTAGATCCATTGATGACCCGAATTATACTGTTGGATTCTC 505
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 414 CGGTAAAAGACAGTATATGCTTAGATCCATTGATGACCCGAATTATACCGTTGGATTCTC 473
Query 506 GGATCGAACTGAGTCGGATTGTCTCGGTTTGCAAGAGTCAAGAGGATCAAGAATGGTAGA 565
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GGATCGGACTGAGTCGGATTGTCTCGGTTTGCAAGAGTCAAGAGGATCAAGAATGGTAGA 533
Query 566 AGCATTGGTGAAAGCAAAGCTTCAAGATGGTTATGTTTCATATCCATGGGAAAGACGAAT 625
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGCATTGGTGAGAGCAAAGCTTCAAGATGGTTATGTTTCATATCCATGGGAAAGACGAAT 593
Query 626 GCAAGAAGCTTTACCAATCTCTGGTTCCAGCAATTTCCTCTCCATTCTTTTTCTTCCCAA 685
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 594 GCAAGAAGCTTTACCAATCTCTGGTTCCAGCAATTTCCTATCCATTCTTTTTCTTCCCAA 653
Query 686 AGCTTCTGCTTATGGAAGGACAGGTTCTCGGTACAATGACTTGGAAGACACGCTTGCTCG 745
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 654 AGCTTCTGCTTATGGAAGGACAGGTTCTCGGTACAATGACTTGGAAGACACACTTGCTCG 713
Query 746 TGCTAATGCTTGGTTAAGTTGTTCACAAGCTAATGGTGTTCCCATTGTTTTTATGAATAT 805
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 714 TGCTAATGCTTGGTTAAGTTGTTCACAAGCTAATGGTGTTCCCATTGTGTTTATGAATAT 773
Query 806 TCAGACTGAATCTTTGCTCACTAAGATATCTGGAGAAACAGCGTCGGCGACGGTGAATAC 865
|||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 774 TCAGACTGAATCTTTGCTCACTAAGATATCGGGAGAAACAGCGTCGGCTACAGTTAATAC 833
Query 866 AACATCGCTTTCGGATCTATCGAATCTTGCAAATACGAGTCTATATGGGTTTGAGGATTA 925
|||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 834 AACATCGCTTTCGGATCTGTCGAATCTTGCAAATGCGAGTCTCTATGGGTTTGAGGATTA 893
Query 926 TCATGGAGTTGATATTGGTGTGGTGAGAGCGGTTCGGCTTTGGTTTGCTCCTCTTGGTGT 985
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 894 TCATGGAGTTGATATCGGTGTGGTGAGAGCGGTTCGACTTTGGTTTGCTCCTCTCGGTGT 953
Query 986 TGAGTTCCCACTTGAAATCAAACTCAAAGATGATGATACCAAACTTGGCTTCTCCATTAG 1045
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGAGTTCCCACTCGAAATCAAACTCAAAGATGATGATACCAAACTTGGCTTCTCCATTAG 1013
Query 1046 CCGCACCGAAGAGGGTTTCATTTACGTGTCATCAGTGACGGACCACGAAGACGAGAGTGC 1105
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1014 CCGCACCGAAGAGGGTTTCATTTACGTCTCATCAGTGACGGACCACGAAGATGAGAGTGC 1073
Query 1106 ACCAGCTGCAAGATCCGGCTTGAGCTCATTGTACAGAGAAGCAGCCAAGGCATCACGTCG 1165
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1074 ACCAGCTGCAAGATCCGGCTTGAGCTCGTTGTACAGAGAAGCAGCCAAGGCATCACGTCG 1133
Query 1166 TCTGGTGGTTTCTCGTGTCGGTAACCAAAAGGTATTGCCATGGATGGTGTCCTCCACAGG 1225
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1134 TCTGGTGGTTTCTCGTGTCGGTAACCAAAAGGTATTGCCTTGGATGGTCTCCTCCACAGG 1193
Query 1226 AGCAATTCGTTGCTACGACACAGTTTCGCTCAGCCAGAAACTGTCACTGCACCGTCACGC 1285
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AGCAATCCGCTGCTACGACACAGTTTCGCTCAGCCAGAAACTGTCACTGCACCGTCACGC 1253
Query 1286 TAAAGTCCACATAGGCCTCCATGTCTTCCTCTGGGACTCCTCTGCCACGGCAGATTTCTC 1345
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1254 CAAAGTCCACATAGGCCTCCACGTCTTCCTCTGGGACTCCTCTGCCACTGCAGATTTCTC 1313
Query 1346 CTCGCCACCAAGGAGTAGCAGCGGTGGGACTCACTTGTTGTTTAGTAACGAAACGCTGGA 1405
||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1314 CTCGCCACCTAGGAGCAGCAGCGGTGGGACTCACTTGTTGTTTAGCAACGAGACGCTCGA 1373
Query 1406 TTCCACGGAGTTCCCACGGTATGGTGAG-GTTTTACCGCCACGACAAGTCGGAGACAGAC 1464
|||||||||||| ||||||||||||||| |||| ||| || |||||| |||| ||||| |
Sbjct 1374 TTCCACGGAGTTTCCACGGTATGGTGAGCGTTT-ACCACCGCGACAAATCGGGGACAGGC 1432
Query 1465 AGGTGATGCCGTTGCCGGATGAAGATGTGTTTAGGTTTGAACGTGAAAATGCCGGTAATG 1524
|||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1433 AGGTAATGCCATTGCCGGATGAAGATGTGTTTAGGTTTGAACGCGAAAATGCGGGTAATG 1492
Query 1525 CTTCATTTAAATTCCAAGAGATTCCTTTCACCAACGAGTCTTTGTGATGGAAATCTACTT 1584
|||||||||| ||||||||||||||||| |||||||||||||||||||| | | |
Sbjct 1493 CTTCATTTAAGTTCCAAGAGATTCCTTTTACCAACGAGTCTTTGTGATGT---T-T-C-- 1545
Query 1585 TTGtttttttCGTTATGTTATATTTTGGGA-G-ATATGTTTTGATACGTGCATGTAAAGT 1642
| ||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 1546 ----------C-TTATGTTATATTTTGGGGTGGATATGTTTTGATACGTGCATGTAAATT 1594
Query 1643 AATTGGAACACTCGAGGAGATGAACTAAGGGTAAGTTAGTTATAT-T-T--CTATATTTA 1698
||||||||||||| |||||||||||||| ||||| |||||||||| | | |||||||||
Sbjct 1595 AATTGGAACACTCAAGGAGATGAACTAAAGGTAAATTAGTTATATGTATTTCTATATTTA 1654
Query 1699 GTTTGCTCCGGTGATAGATCATGGATGCTTGTTCAGTTGTTCCTTTCTTTGTAATGGAAG 1758
||||||||||||||| | | ||||||||||| | ||||||||||| ||||
Sbjct 1655 GTTTGCTCCGGTGAT----C--G-ATGCTTGTTCA------C-TTTCTTTGTAAGGGAAA 1700
Query 1759 GATTTGTTATCTTCAACTCCATAACA 1784
| ||||||||||| ||||||||||||
Sbjct 1701 GTTTTGTTATCTTTAACTCCATAACA 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5