BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12080.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327335 jgi|Araly1|327335|fgenesh1_pm.C_scaffold_6002555 1594 0.0
> Ahg327335 jgi|Araly1|327335|fgenesh1_pm.C_scaffold_6002555
Length=1062
Score = 1594 bits (863), Expect = 0.0
Identities = 1002/1069 (94%), Gaps = 9/1069 (1%)
Strand=Plus/Plus
Query 248 ATGGTCTTAAATATGGAGTCTACCGGAGAAGCTGTTAGATCAACCACCGGTAACGACGGT 307
||||||||| ||||||||||||||||||||| ||||| ||||||| || |||||| |||
Sbjct 1 ATGGTCTTAGATATGGAGTCTACCGGAGAAGTTGTTAAATCAACCGCCAGTAACGGCGGC 60
Query 308 GGTATTACGGTGGTTAGATCCGACGCGCCGTCAGATTTCCACGTAGCTCAAAGATCAGAA 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTATTACGGTGGTTAGATCCGACGCGCCGTCAGATTTCCACGTAGCTCAAAGATCAGAA 120
Query 368 AGCTCAAACCAATCTCCCACCTCTGTCACTCCTCCTCCACCACAGCCATCGTCTCATCAC 427
|||||||||||||||||| |||| ||||||||||||||| |||| || ||||||||||||
Sbjct 121 AGCTCAAACCAATCTCCCGCCTCCGTCACTCCTCCTCCATCACAACCGTCGTCTCATCAC 180
Query 428 ACAGCTCCTCCGCCGCTGCAAATTTCGACGGTGACGACTACGACTACGACGGCCGCGATG 487
|||||||||||||||| ||||| |||||||| |||| |||||||||||| || |||
Sbjct 181 ACAGCTCCTCCGCCGCCGCAAAGTTCGACGG---CGAC---GACTACGACGGCAGCTATG 234
Query 488 GAAGGTATCTCCGGTGGACTGATGAAGAAGAAGCGTGGACGGCCAAGGAAGTATGGACCG 547
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 235 GAAGGTATCTCCGGTGGACTAATCAAGAAGAAGCGTGGACGGCCAAGGAAGTACGGACCG 294
Query 548 GACGGGACTGTTGTAGCGTTATCTCCTAAACCGATTTCATCAGCGCCGGCGCCGTCGCAT 607
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 295 GACGGGACTGTTGTAGCGTTATCTCCTAAGCCAATTTCATCAGCGCCGGCGCCGTCGCAT 354
Query 608 CTTCCGCCGCCGAGTTCACACGTCATCGATTTCTCCGCTTCTGAGAAACGTAGCAAAGTG 667
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 CTTCCGCCGCTGAGTTCACACGTCATCGATTTCTCCGCCTCTGAGAAACGTAGCAAAGTG 414
Query 668 AAACCAACGAACTCGTTTAACAGAACAAAGTATCATCACCAAGTTGAGAATTTGGGTGAA 727
|||||||| ||| | ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 415 AAACCAACAAACACTTTTAACAGAACCAAGTATCATCATCAAGTTGAGAATTTGGGTGAA 474
Query 728 TGGGCTCCTTGCTCCGTCGGTGGTAATTTCACACCTCATATAATCACAGTCAACACCGGC 787
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 475 TGGGCTCCTTGCTCCGTCGGTGGTAATTTCACACCTCATGTAATCACAGTCAACGCTGGT 534
Query 788 GAGGATGTAACAATGAAGATAATCTCGTTTTCGCAACAAGGACCTCGCTCTATTTGTGTT 847
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 535 GAGGATGTAACAATGAAGATAATCTCGTTTTCGCAACAAGGACCTCGTTCTATTTGCGTT 594
Query 848 CTGTCAGCAAACGGTGTTATTTCAAGCGTTACACTTCGTCAGCCAGATTCCTCTGGCGGC 907
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 595 CTATCAGCAAATGGTGTTATTTCAAGCGTTACACTTCGTCAGCCTGATTCCTCTGGCGGT 654
Query 908 ACATTGACATACGAAGGTCGGTTTGAGATATTATCATTATCCGGGTCATTCATGCCTAAT 967
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 655 ACATTGACATACGAAGGTCGGTTTGAGATATTATCATTGTCCGGGTCATTCATGCCTAAT 714
Query 968 GATTCAGGCGGAACACGAAGTAGAACGGGAGGAATGAGTGTATCGTTAGCAAGTCCCGAT 1027
|||||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 715 GATTCAGGCGGAACTCGGAGTAGAACTGGAGGAATGAGCGTATCGTTAGCAAGCCCCGAC 774
Query 1028 GGACGTGTAGTAGGCGGTGGCCTCGCCGGTTTACTAGTAGCCGCGAGTCCGGTTCAGGTG 1087
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 775 GGACGTGTAGTAGGCGGTGGCCTTGGCGGTTTACTAGTAGCCGCGAGTCCGGTTCAGGTG 834
Query 1088 GTTGTAGGAAGTTTTTTAGCGGGCACTGACCATCAAGATCAGAAACCGAAAAAGAACAAA 1147
||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct 835 GTTGTAGGAAGTTTTCTAGCTGGCACTGACCAGCAAGATCAGAAACAGAAAAAGAACAAA 894
Query 1148 CATGATTTCATGTTGTCGAGTCCTACCGCTGCAATTCCTATCTCTAGTGCAGCTGATCAC 1207
|| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 895 CACGATTTCATGTTGTCCAATCCTACCGCTGCGATTCCTATCTCTAGTGCAGCTGATCAC 954
Query 1208 CGGACAATCCATTCGGTCTCGTCTCTTCCGGTCAATAATAATACATGGCAGACTTCTTTA 1267
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 955 CGGACAATCCATTCGGTCTCGTCTCTTCCGGTCAATAATA---CATGGCAGACTTCTTTA 1011
Query 1268 GCTTCCGATCCAAGAAACAAGCATACCGATATTAATGTCAATGTAACTT 1316
||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1012 GCTTCTGATCCAAGAAACAAGCATTCCGATATTAATGTCAATTTAACTT 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5