BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G12090.1

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg895419 jgi|Araly1|895419|Al_scaffold_0006_3415                    654    0.0  


> Ahg895419 jgi|Araly1|895419|Al_scaffold_0006_3415
Length=408

 Score =  654 bits (354),  Expect = 0.0
 Identities = 391/409 (96%), Gaps = 2/409 (0%)
 Strand=Plus/Plus

Query  1    ATGGGCGATCTACTCGATTGGATTATCTCTTTCTTATTCCTCGCAACGCTTATAATCATC  60
            ||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||
Sbjct  1    ATGGGCGATCTACTCGATTGGATTATCTCTTTCTTATTCCTCGTAACCCTTCTCATCATC  60

Query  61   GTTATTTATCAGCTGACATGTTTGGCAGATTTAGAGTTCGATCGCATAAACCCTTACGAT  120
            |||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct  61   GTTATTTACCAGTTGACATGTTTGGCGGATTTAGAGTTCGATCGCAGAAACCCTTACGAT  120

Query  121  GTATCTAGC-AGAATAAACCGAATGGTTCTACCGGAATTTGGTTTACAAGGACTTCTTTG  179
            | ||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCATCTA-CTAAAATAAACCGGATGGTTCTACCGGAATTTGGTTTACAAGGACTTCTTTG  179

Query  180  CTTATACTATATCCTAACCGGACATTGGTTCATGGCGGTTTTGTCTCTTCCCCACCTTTT  239
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  CTTATACTATATCTTAACCGGACATTGGTTCATGGCGGTTTTGTCTCTTCCCCACCTTTT  239

Query  240  CTACAACATTAGACTATACATGAAGAGGGAACATTTGGCAGACGTAACAGAGTTATACAA  299
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  240  CTACAACATTAGACTATACATGAAAAGGGAACATTTGGCAGACGTAACAGAGTTATACAA  299

Query  300  CACAAATAAATGGGAGCAAAAGAAACGAGTGTACAAGATTGGTCATATAGCTCTCTCCAT  359
            ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  300  CACAAATAAATGGGAACAAAAGAAACGTGTGTACAAGATTGGTCATATAGCTCTCTCCAT  359

Query  360  TTTTATCACAACCTATTGGTTGATCCACTCGGCATTAGGAGACATCTAA  408
            |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  360  TTTTATCACATCCTATTGGTTGATCCACTCGGCATTAGGAGACATCTAA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14651746176


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5