BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12100.1
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327338 jgi|Araly1|327338|fgenesh1_pm.C_scaffold_6002558 959 0.0
> Ahg327338 jgi|Araly1|327338|fgenesh1_pm.C_scaffold_6002558
Length=1221
Score = 959 bits (519), Expect = 0.0
Identities = 629/681 (92%), Gaps = 12/681 (2%)
Strand=Plus/Plus
Query 589 AAGCTTTTCCATAAACAACTCTCCATGGCCCCTCAACTTCAAGATCAAGTTATTACCGGC 648
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 526 AAGCTTTTCCATAAGCAACTCTCCACGGCCCCTCAACTTCAAGATCAAGTTATTACCGGC 585
Query 649 ATATTAAGACTCATCACTGATGAAAGATTAGGCAAGGCTGCGAACAACACGAGTGATCTC 708
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 586 ATATTAGGACTCATCACTGATGAAAGATTAGGCAAGGCTGCTAACAACACTAGTGGTCTC 645
Query 709 CTAAAGAATCTTATGGACATGTTCCGCATGCAGTGGCAGTGTACATATGTGTATAAGGAC 768
|||||||||||||||||||||||||| | | ||||||| || ||||||||||| ||
Sbjct 646 CTAAAGAATCTTATGGACATGTTCCG--T---G-GGCAGTGGCCAGATGTGTATAAGAAC 699
Query 769 CCTTTTCTTGATTCCACTTCTAAGTTTTACGCCGAGGAAGCAGAGCAAGTCCTGCAGCGA 828
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 700 CCTTTTCTTGATTCCACTTCTAAGTTTTACGCCGAGGAAGCAGAGCTAGTCCTGCAGCGG 759
Query 829 TCCGACATTTCCCACTACTTGAAATATGTCGAGAGGACTTTCCTTGCGGAAGAGGAAAAA 888
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 760 TCCGACATTTCCCACTACTTGAAATATGTCGAG-----TTTCCTTGCGGAAGAGAAAAAA 814
Query 889 TGCGATAAGCATTATTTCTTCTTTTCATCTTCCCGGTCTCGACTAATGAAAGTCTTAAAG 948
||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||| ||
Sbjct 815 TGCGAGGAGCATTATTACTTCTTTGCATCTTGCCGGTCACGACAAATGAAAGTCTTAGAG 874
Query 949 AGTCAGCTCCTGGAGGCGCACTCTTCTTTTCTTGAAGAGGGTTTTATGCTATTAATGGAT 1008
||||||||||| ||||| ||| ||| ||| |||||||| ||||||| |||||||||||||
Sbjct 875 AGTCAGCTCCTCGAGGCTCACGCTTGTTT-CTTGAAGATGGTTTTAAGCTATTAATGGAT 933
Query 1009 GAGAGTCTCATCGATGACCTTAGAAGAATGTATCGTTTGTTCTCTATGGTAGATTCGGAG 1068
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 934 GAGAGTCTCATGGATGACCTTAGAAGAATGTATCGTTTGTTCTCTAGGGTAGATTCGGTG 993
Query 1069 GATTATATAGACCGCATTCTGAGAGCCTACATTTTGGCAAAAGGAGAGGGAGCTAGGCAA 1128
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 994 GATTATATAGACCGCATTCTGAGAGCCTACATTTTGGCAAAGGGAGAGGGAGCGAGGCAA 1053
Query 1129 GAAGGCTCCTTGCAGGAGTTGCATACTAGCATCGATAAGATATGGCATCAATGCTTTGGT 1188
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1054 GAAGGCTCCTTGCAGGAGTTGCATACTAGCATTGATAAGATATGGCATCAATGCTTTGAT 1113
Query 1189 CAGGACGATTTGTTGGATAAGACCATCAGAGACTGTTTTGAGGGTTTTGGTCTTCATGTG 1248
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GTGTATGATTTATTGGATAAGACCATCAGAGACTGTTTTGAGGGTTTTGGTCTTCATGTG 1173
Query 1249 CCGGGTGAATTTTCGGATCAA 1269
| |||||||||||||||||||
Sbjct 1174 CTGGGTGAATTTTCGGATCAA 1194
Score = 665 bits (360), Expect = 0.0
Identities = 485/542 (89%), Gaps = 22/542 (4%)
Strand=Plus/Plus
Query 1 ATGAAACGCTCGATCAGCCCCGACCCTTTTTCCTCAACGAAGTCGCCGAAACTCGTTCAC 60
|||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||| |||||
Sbjct 1 ATGAAACGCTCGCTCAGCCCCGACTCTTTATCCTCCGCGAAGTCGCCGAAGCTCTTTCAC 60
Query 61 CACTCACCGGATGATGGAGGAGCAGAGGGCAATCCTTATCGTCTTCCTTTTACCTTAAGC 120
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 61 CACTCACCGGATGATGGAGGAGCAGAGGGCAATTCTTATCGTCTTCCTTATACCTTAAGC 120
Query 121 GATGAAAACCTCTCATGCCTTCCTATCTCCCAGGCGAGGGAGCCTCCTCCTATCTTTAAC 180
|||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||| ||
Sbjct 121 GATGAAAACCTCTCCTGCCTTCCTATATCCCAGGCGAGGGAGCCTCCTGCTA--TTT-AC 177
Query 181 TTGGATCCCAATTC-TGTCAAAGATACACAAGACAGAAACA-AACTATACTTAGCAAAAG 238
|||||||| || ||| |||| || || ||||||||| | || ||||||||||||||
Sbjct 178 CTGGATCCC-GCTCTTGTTAAAGTTAGACGAGACAGAAA-AGAAGGATACTTAGCAAAAG 235
Query 239 CTTGGGACTTGCTAAAGCCAGCGATCAAAATCATCTTAGATGATGATGAATACAAAAAGC 298
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 236 CTTGGGACTTGCTAAAGCCAGCGATCAAAATCATCTTAGATGATGA--A-TACAAGAAGC 292
Query 299 CTGGCGACGTTCTCTGTTTCACTACGATTTTTAGAGCTGTTAAGCGTGCTTGCTTAGGCG 358
|||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 293 CTGGCG---TTCTCTGTTTCACTACCATTTTTAGAGCTGTTAAGCGTGCTTACTTTGGCG 349
Query 359 ATCCTCGACAA-TCAGAACTGGTTTTCAATCTTGTCAAGCATGAGTGTGAGCCTCACATT 417
|||||| |||| | ||||||| ||||| |||||||| |||||||||||||||| ||||||
Sbjct 350 ATCCTCCACAAGT-AGAACTGATTTTCGATCTTGTCCAGCATGAGTGTGAGCCACACATT 408
Query 418 GCTGAGCTTATACAGTCTTTAGAAAAG-AATTGCAGTGGCAGTGATGATCCCTCTGTGTT 476
|||||| |||||||||||||||||||| || |||||||||||||| |||||||| ||
Sbjct 409 GCTGAGGTTATACAGTCTTTAGAAAAGCAAA-GCAGTGGCAGTGAT---CCCTCTGTTTT 464
Query 477 CTTGCCACACGTGTACAATCGCTGGCTAGACTTTAAAAGGAAGATGA-GTCTTGTGTCTG 535
|||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 465 CTTGCCACTCGTGTACAATTGCTGGCTAGACTTTAAAAGGAAGATGATG-CTTGTGTCTG 523
Query 536 AC 537
||
Sbjct 524 AC 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49979144187
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5