BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12100.1 Length=1336 Score E Sequences producing significant alignments: (Bits) Value Ahg327338 jgi|Araly1|327338|fgenesh1_pm.C_scaffold_6002558 959 0.0 > Ahg327338 jgi|Araly1|327338|fgenesh1_pm.C_scaffold_6002558 Length=1221 Score = 959 bits (519), Expect = 0.0 Identities = 629/681 (92%), Gaps = 12/681 (2%) Strand=Plus/Plus Query 589 AAGCTTTTCCATAAACAACTCTCCATGGCCCCTCAACTTCAAGATCAAGTTATTACCGGC 648 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 526 AAGCTTTTCCATAAGCAACTCTCCACGGCCCCTCAACTTCAAGATCAAGTTATTACCGGC 585 Query 649 ATATTAAGACTCATCACTGATGAAAGATTAGGCAAGGCTGCGAACAACACGAGTGATCTC 708 |||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |||| Sbjct 586 ATATTAGGACTCATCACTGATGAAAGATTAGGCAAGGCTGCTAACAACACTAGTGGTCTC 645 Query 709 CTAAAGAATCTTATGGACATGTTCCGCATGCAGTGGCAGTGTACATATGTGTATAAGGAC 768 |||||||||||||||||||||||||| | | ||||||| || ||||||||||| || Sbjct 646 CTAAAGAATCTTATGGACATGTTCCG--T---G-GGCAGTGGCCAGATGTGTATAAGAAC 699 Query 769 CCTTTTCTTGATTCCACTTCTAAGTTTTACGCCGAGGAAGCAGAGCAAGTCCTGCAGCGA 828 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 700 CCTTTTCTTGATTCCACTTCTAAGTTTTACGCCGAGGAAGCAGAGCTAGTCCTGCAGCGG 759 Query 829 TCCGACATTTCCCACTACTTGAAATATGTCGAGAGGACTTTCCTTGCGGAAGAGGAAAAA 888 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 760 TCCGACATTTCCCACTACTTGAAATATGTCGAG-----TTTCCTTGCGGAAGAGAAAAAA 814 Query 889 TGCGATAAGCATTATTTCTTCTTTTCATCTTCCCGGTCTCGACTAATGAAAGTCTTAAAG 948 ||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||| || Sbjct 815 TGCGAGGAGCATTATTACTTCTTTGCATCTTGCCGGTCACGACAAATGAAAGTCTTAGAG 874 Query 949 AGTCAGCTCCTGGAGGCGCACTCTTCTTTTCTTGAAGAGGGTTTTATGCTATTAATGGAT 1008 ||||||||||| ||||| ||| ||| ||| |||||||| ||||||| ||||||||||||| Sbjct 875 AGTCAGCTCCTCGAGGCTCACGCTTGTTT-CTTGAAGATGGTTTTAAGCTATTAATGGAT 933 Query 1009 GAGAGTCTCATCGATGACCTTAGAAGAATGTATCGTTTGTTCTCTATGGTAGATTCGGAG 1068 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 934 GAGAGTCTCATGGATGACCTTAGAAGAATGTATCGTTTGTTCTCTAGGGTAGATTCGGTG 993 Query 1069 GATTATATAGACCGCATTCTGAGAGCCTACATTTTGGCAAAAGGAGAGGGAGCTAGGCAA 1128 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 994 GATTATATAGACCGCATTCTGAGAGCCTACATTTTGGCAAAGGGAGAGGGAGCGAGGCAA 1053 Query 1129 GAAGGCTCCTTGCAGGAGTTGCATACTAGCATCGATAAGATATGGCATCAATGCTTTGGT 1188 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 1054 GAAGGCTCCTTGCAGGAGTTGCATACTAGCATTGATAAGATATGGCATCAATGCTTTGAT 1113 Query 1189 CAGGACGATTTGTTGGATAAGACCATCAGAGACTGTTTTGAGGGTTTTGGTCTTCATGTG 1248 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1114 GTGTATGATTTATTGGATAAGACCATCAGAGACTGTTTTGAGGGTTTTGGTCTTCATGTG 1173 Query 1249 CCGGGTGAATTTTCGGATCAA 1269 | ||||||||||||||||||| Sbjct 1174 CTGGGTGAATTTTCGGATCAA 1194 Score = 665 bits (360), Expect = 0.0 Identities = 485/542 (89%), Gaps = 22/542 (4%) Strand=Plus/Plus Query 1 ATGAAACGCTCGATCAGCCCCGACCCTTTTTCCTCAACGAAGTCGCCGAAACTCGTTCAC 60 |||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||| ||||| Sbjct 1 ATGAAACGCTCGCTCAGCCCCGACTCTTTATCCTCCGCGAAGTCGCCGAAGCTCTTTCAC 60 Query 61 CACTCACCGGATGATGGAGGAGCAGAGGGCAATCCTTATCGTCTTCCTTTTACCTTAAGC 120 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 61 CACTCACCGGATGATGGAGGAGCAGAGGGCAATTCTTATCGTCTTCCTTATACCTTAAGC 120 Query 121 GATGAAAACCTCTCATGCCTTCCTATCTCCCAGGCGAGGGAGCCTCCTCCTATCTTTAAC 180 |||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||| || Sbjct 121 GATGAAAACCTCTCCTGCCTTCCTATATCCCAGGCGAGGGAGCCTCCTGCTA--TTT-AC 177 Query 181 TTGGATCCCAATTC-TGTCAAAGATACACAAGACAGAAACA-AACTATACTTAGCAAAAG 238 |||||||| || ||| |||| || || ||||||||| | || |||||||||||||| Sbjct 178 CTGGATCCC-GCTCTTGTTAAAGTTAGACGAGACAGAAA-AGAAGGATACTTAGCAAAAG 235 Query 239 CTTGGGACTTGCTAAAGCCAGCGATCAAAATCATCTTAGATGATGATGAATACAAAAAGC 298 |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| Sbjct 236 CTTGGGACTTGCTAAAGCCAGCGATCAAAATCATCTTAGATGATGA--A-TACAAGAAGC 292 Query 299 CTGGCGACGTTCTCTGTTTCACTACGATTTTTAGAGCTGTTAAGCGTGCTTGCTTAGGCG 358 |||||| |||||||||||||||| ||||||||||||||||||||||||| ||| |||| Sbjct 293 CTGGCG---TTCTCTGTTTCACTACCATTTTTAGAGCTGTTAAGCGTGCTTACTTTGGCG 349 Query 359 ATCCTCGACAA-TCAGAACTGGTTTTCAATCTTGTCAAGCATGAGTGTGAGCCTCACATT 417 |||||| |||| | ||||||| ||||| |||||||| |||||||||||||||| |||||| Sbjct 350 ATCCTCCACAAGT-AGAACTGATTTTCGATCTTGTCCAGCATGAGTGTGAGCCACACATT 408 Query 418 GCTGAGCTTATACAGTCTTTAGAAAAG-AATTGCAGTGGCAGTGATGATCCCTCTGTGTT 476 |||||| |||||||||||||||||||| || |||||||||||||| |||||||| || Sbjct 409 GCTGAGGTTATACAGTCTTTAGAAAAGCAAA-GCAGTGGCAGTGAT---CCCTCTGTTTT 464 Query 477 CTTGCCACACGTGTACAATCGCTGGCTAGACTTTAAAAGGAAGATGA-GTCTTGTGTCTG 535 |||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||| Sbjct 465 CTTGCCACTCGTGTACAATTGCTGGCTAGACTTTAAAAGGAAGATGATG-CTTGTGTCTG 523 Query 536 AC 537 || Sbjct 524 AC 525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49979144187 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5