BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12110.1
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943115 jgi|Araly1|943115|scaffold_603659.1 1524 0.0
Ahg329352 jgi|Araly1|329352|fgenesh1_pm.C_scaffold_7001579 808 0.0
> Ahg943115 jgi|Araly1|943115|scaffold_603659.1
Length=939
Score = 1524 bits (825), Expect = 0.0
Identities = 902/940 (96%), Gaps = 1/940 (0%)
Strand=Plus/Plus
Query 128 AACACTCACCGTGAGAAAACCATGATTCCTTACGCTACAGTCGAAGAAGCTTCAATCGCA 187
|||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1 AACACTCACCGTGA-AAAACCATGATTCCTTACGCCACAATCGAAGAAGCTTCAATCGCA 59
Query 188 CTGGGACGAAACCTCACACGTCTCGAAACTCTATGGTTCGATTACTCCGCCACGAAGTCC 247
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 60 CTCGGACGAAACCTCACACGGCTCGAAACTCTGTGGTTCGATTACTCCGCCACAAAGTCC 119
Query 248 GATTACTATCTCTACTGTCACAACATTTTGTTCTTGTTCCTCGTCTTCTCTCTCGTTCCT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GATTACTATCTCTACTGTCACAACATTTTGTTCTTGTTCCTCGTCTTCTCTCTCGTTCCT 179
Query 308 CTCCCTCTCGTTTTCGTCGAATTGGCTCGATCTGCTTCTGGTTTGTTTAATCGGTATAAG 367
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 CTCCCTCTTGTTTTCGTCGAATTGGCTCGATCTGCTTCTGGTTGGTTTAATCGGTATAAG 239
Query 368 ATCCAGCCTAAGGTTAATTACTCTTTATCTGATATGTTCAAATGTTACAAAGACGTCATG 427
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCCAACCTAAGGTTAATTACTCTTTATCTGATATGTTCAAATGTTACAAAGACGTCATG 299
Query 428 ACGATGTTTATCCTCGTCGTTGGTCCATTGCAACTCGTTTCTTATCCTTCGATTCAGATG 487
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 300 ACCATGTTTATCCTCGTCGTTGGTCCGTTGCAACTCGTTTCTTATCCTTCCATTCAGATG 359
Query 488 ATTGAGATACGATCTGGATTACCATTACCAACAATTACAGAGATGCTGTCACAGTTAGTA 547
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 360 ATTGAGATTCGATCTGGATTACCATTACCAACAATAACAGAGATACTGTCACAGTTAGTA 419
Query 548 GTCTACTTCTTGATAGAAGACTACACTAACTACTGGGTACATAGATTCTTTCATAGTAAA 607
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GTCTACTTCTTGATAGAAGACTACACTAACTACTGGGTCCATAGATTCTTTCATAGTAAA 479
Query 608 TGGGGATACGATAAGATTCATCGAGTTCATCACGAGTACACAGCTCCTATAGGATATGCT 667
||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 480 TGGGGTTACGACAAGATTCATCGAGTTCATCACGAGTATACAGCTCCGATAGGATATGCT 539
Query 668 GCTCCTTATGCACATTGGGCTGAAGTTTTGCTTCTCGGAATCCCGACGTTTATGGGACCA 727
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 GCTCCATATGCACATTGGGCTGAAGTTTTGCTTCTCGGAATCCCAACGTTTATGGGACCA 599
Query 728 GCTATTGCTCCTGGTCATATGATAACCTTTTGGTTGTGGATTGCTTTAAGGCAAATGGAA 787
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 GCTATTGCTCCTGGTCACATGATAACCTTTTGGTTGTGGATAGCTTTAAGGCAAATGGAG 659
Query 788 GCTATTGAGACTCACAGTGGATATGATTTTCCATGGAGTCCAACAAAATACATCCCTTTC 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCTATTGAGACTCACAGTGGATATGATTTTCCATGGAGTCCAACAAAATACATCCCTTTC 719
Query 848 TACGGTGGTGCTGAGTACCATGACTATCATCACTACGTTGGAGGACAAAGTCAAAGCAAC 907
|||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 720 TACGGTGGCGCTGAGTACCACGATTATCATCACTACGTTGGAGGACAAAGCCAAAGCAAC 779
Query 908 TTCGCTTCAGTGTTCACGTACTGTGATTACATTTATGGAACTGACAAGGGTTACAGATTC 967
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 TTCGCTTCGGTGTTCACTTACTGTGATTACATTTATGGAACTGACAAGGGTTACCGATTC 839
Query 968 CAAAAGAAGCTTCTTGAGCAGATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGA 1027
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 840 CAAAAGAAGCTTCTTGAGCAGATCAAGGAGTCGTCTAAGAAGAGCAACAAGCATAACGGA 899
Query 1028 GGAATAAAATCCGATTAGTAAAAACCGGAGAAGAAGATTT 1067
||||| || ||||||||||| ||||||| |||||||||||
Sbjct 900 GGAATCAAGTCCGATTAGTAGAAACCGGCGAAGAAGATTT 939
> Ahg329352 jgi|Araly1|329352|fgenesh1_pm.C_scaffold_7001579
Length=2334
Score = 808 bits (437), Expect = 0.0
Identities = 718/854 (84%), Gaps = 17/854 (2%)
Strand=Plus/Plus
Query 149 ATGATTCCTTACGCTACAGTCGAAGAAGCTTCAATCGCACTGGGACGAAACCTCAC-ACG 207
||||| |||||||| ||||||||||| || || || || | || ||||||||||| |||
Sbjct 1 ATGATCCCTTACGCCACAGTCGAAGACGCATCCATAGCGTTAGGCCGAAACCTCACAACG 60
Query 208 TCTCGAAACTCTATGGTTCGATTACTCCGCCACGAAGTCCGATTACTATCTCTACTGTCA 267
||||| ||||| |||||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct 61 -CTCGAGACTCTCTGGTTCGATTACTCCGCCACCAAATCCGATTACTACCTCTACTGCCA 119
Query 268 CAACATTTTGTTCTTGTTCCTCGTCTTCT-CTCTCGTTCCTCTCCCTCTCGTTTTCGTCG 326
||||||| | ||| | |||||| |||||| || |||| |||||||||||||| ||| |||
Sbjct 120 CAACATTCTCTTCCTCTTCCTCATCTTCTCCT-TCGTCCCTCTCCCTCTCGTCTTCATCG 178
Query 327 AATTGGCTCG-ATCTGCTTCTGGTTTGTTTAATCGGTATAAGATCCAGCCTAAGGTTAAT 385
||| || | |||| | || | || ||| ||||| || ||||| || || ||||| ||
Sbjct 179 AATCATCT-GAATCTACCTCAGATTGGTTCAATCGCTACAAGATTCAACCCAAGGTGAAG 237
Query 386 TACTCTTTATCTGATATGTTCAAATGTTACAAAGACGTCATGACGATGTTTATCCTCGTC 445
|||| || || |||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct 238 AACTCGTTCTCCGATATGTTCAAATGTTACAAAGCCGTCATGAAGATGTTCCTCCTCGTC 297
Query 446 GTTGGTCCATTGCAACTCGTTTCTTATCCTTCGATTCAGATGATTGAGATACGATCTGGA 505
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 298 GTTGGTCCATTGCAACTCGTTTCTTATCCTTCGATTCAGATGATTGAGATTCGAAGTGGA 357
Query 506 TTACCATTACCAACAA-TTACAGAGAT-GCT-GTCACAGTTAGTAGTCTACTTCTTGATA 562
|| ||||||||| | || ||||| | | | | |||||||| || ||||||||| ||
Sbjct 358 TTGCCATTACCATCGTGTTTG-GAGATTG-TAG-CTCAGTTAGTGGTTTACTTCTTGGTA 414
Query 563 GAAGACTACACTAACTACTGGGTACATAGATTCTTTCATAGTAAATGGGGATACGATAAG 622
|| || || || || |||||||| ||||||||||||||| |||||||||| || || |||
Sbjct 415 GAGGATTATACAAATTACTGGGTTCATAGATTCTTTCATTGTAAATGGGGTTATGAGAAG 474
Query 623 ATTCATCG-AGTTCATCACGAGTACACAGCTCCTATAGGATATGCTGCTCCTTATGCACA 681
|||||| | ||||||| ||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 475 TTTCATCATA-TTCATCATGAGTATACAGCTCCTATTGGATATGCTGCTCCATATGCTCA 533
Query 682 TTGGGCTGAAGTTTTGCTTCTCGGAATCCCGACGTTTATGGGACCAGCTATTGCTCCTGG 741
||||||||| |||||||||||||| || ||||||||| | ||||| ||||||||||||||
Sbjct 534 TTGGGCTGAGGTTTTGCTTCTCGGGATTCCGACGTTTCTTGGACCGGCTATTGCTCCTGG 593
Query 742 TCATATGATAACCTTTTGGTTGTGGATTGCTTTAAGGCAAATGGAAGCTATTGAGACTCA 801
||||||||| || ||||||||||||||||||||| | || || || ||||| || |||||
Sbjct 594 TCATATGATTACGTTTTGGTTGTGGATTGCTTTACGACAGATTGAGGCTATCGAAACTCA 653
Query 802 CAGTGGATATGATTTTCCATGGAGTCCAACAAAATACATCCC-TTTCTACGGTGGTGCTG 860
|| || |||||||| ||||||| || ||||||||||| || ||| || ||||| ||||
Sbjct 654 TAGCGGGTATGATTTCCCATGGACTCTGACAAAATACATTCCATTT-TATGGTGGAGCTG 712
Query 861 AGTACCATGACTATCATCACTACGTTGGAGGACAAAGTCAAAGCAACTTCGCTTCAGTGT 920
|||| ||||| || ||||||||||||||||||||||| || || ||||| ||||||||||
Sbjct 713 AGTATCATGATTACCATCACTACGTTGGAGGACAAAGCCAGAGTAACTTTGCTTCAGTGT 772
Query 921 TCACGTACTGTGATTACATTTATGGAACTGACAAGGGTTACAGATTCCAAAAGAAGCTTC 980
| || ||||| |||||||| ||||||||||| || |||||| ||||||| ||||||||||
Sbjct 773 TTACTTACTGCGATTACATCTATGGAACTGATAAAGGTTACCGATTCCAGAAGAAGCTTC 832
Query 981 TTGAGCAGAT-CAA 993
|| ||||||| |||
Sbjct 833 TTCAGCAGATTCAA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54126238145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5