BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12130.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490030 jgi|Araly1|490030|fgenesh2_kg.6__3164__AT4G12130.1 2165 0.0
> Ahg490030 jgi|Araly1|490030|fgenesh2_kg.6__3164__AT4G12130.1
Length=1415
Score = 2165 bits (1172), Expect = 0.0
Identities = 1330/1405 (95%), Gaps = 15/1405 (1%)
Strand=Plus/Plus
Query 9 GAAGAACGATACTAACAGAGCCTTCACAGAGAGATGTTTCGATTCAATTTCCGTCGTGAA 68
||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1 GAAGAACAATACTAACAGAGCCTTCACA-AGAGATGTTTCGATTCAATTTTCGTCGTGAA 59
Query 69 ATCTCCAAATATACCGGAATTTATCACCGGAAGATACACAGCGGTCTAGAAGATGCCGGT 128
|||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 60 ATCTCCAAATCTACCGGAATTTATCACCGGAAAATCCACAGCGGTCTAGAAGATGCCGGT 119
Query 129 CCGATGGCGTCTCGCCTTAAATCACGTTCCGTTGTCCGGTTTAGCGGACCGGATACGGTT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGATGGCGTCTCGCCTTAAATCACGTTCCGTTGTCCGGTTTAGCGGACCGGATACGGTT 179
Query 189 AAGTTTCTTCAAGGTTTGTTAACCAACGATGTACGGAGATTCGGCGAATCCTCCGGCGAG 248
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 180 AAGTTTCTTCAAGGTTTGTTAACCAACGATGTAAGAAGATTCGGCGAATCCTCCGGCGAG 239
Query 249 AAGAACTCGGCGGTTCCTACGCCGAACATGGCTTCCGTTACGAATCCGCCTATGTACGCA 308
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 240 AAGAACTCGGCGGTTCCTACGCCGAACATGGCTTCCGTTTCGACTCCGCCTATGTATGCG 299
Query 309 GCGTTGTTAACTCCTCAAGGAAGGTTTCTATACGATTTTTTCTTGTATAGCCCTTCGAGA 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GCGTTGTTAACTCCTCAAGGAAGGTTTCTATACGATTTTTTCTTGTATAGCCCTTCGAAA 359
Query 369 CCCGATGAAAAGCTTGATCGGACTGGTTCAGGACCCGGGTCGGATTCGGGTCGTGATGGG 428
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCGAGGAAAAGCTTAATCGGACTGGTTCAGGACCCGGGTCGGATTCGGGTCGTGATGGG 419
Query 429 TCTGTTGAGTTGTTTGCAGATGTTGATGTTGATGTCCTCGATGAATTGCTTGAAACTCTC 488
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCGGTTGAGTTGTTTGCTGATGTTGATGTTGATGTCCTCGATGAATTGCTTGAAACTCTC 479
Query 489 AAAAAATATCGCTTGAGGTCCAAAGTGGATATTGAAAACGTTGCAGAGGAGTTTTCGTGT 548
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 AAAAAGTATCGGTTGAGGTCCAAAGTGGATATTGAAAACGTTGCGGAGGAGTTTTCGTGT 539
Query 549 TGGCAGCGTTACGGTAGGAATCTTACTGGATCATCATCTGTTGGTTGGGGTGGTGGTGTT 608
|||||||| ||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 540 TGGCAGCGATACGGTAGGAATCTTTCTGGATCATCATCTGTCGGTTGGGGCGGTGGTGTT 599
Query 609 GATCGTGCTGGTGAGTCTACAGCTAGTGGTAATAAGTATGGATGGCAATGGTATAAGGAT 668
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATCGTGCTGGTGAATCTACAGCTAGTGGTAATAAGTATGGATGGCAATGGTATAAGGAT 659
Query 669 CCGAGGTTGGAGTGTCTCGGTTACAGAAGTATCTTTCCGTCTGATGCAACTCCGCCTTTA 728
|| |||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 660 CCAAGGTTGGAATGTCTCGGTTACAGAAGCATCTTTCCGTCCGATGCAACCCCGCCTTTA 719
Query 729 GTTGAGGCAGATAAAGAAACAGATGAAAGCAATTATCTTTTATGGAGATTAGAGCATGGA 788
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 GTTGAGGCAGATAAAGAAACAGATGAAAGCAATTACCTTTTATGGAGATTAGAGCATGGA 779
Query 789 GTTGCTGAAGGATCAGCTGAAATTCCTAAAGGTGAAGCAATTCCGCTTGAATATAATTTC 848
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 GTTGCCGAAGGATCAGCTGAAATCCCTAAAGGTGAAGCAATTCCGCTTGAATATAATTTT 839
Query 849 GTTGGTCTTAATGCTATAAGCTTTGACAAAGGCTGCTATGTTGGTCAAGAGCTTATAGCT 908
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTTGGTCTTAATGCGATAAGCTTTGACAAAGGCTGCTATGTTGGTCAAGAGCTTATAGCT 899
Query 909 CGTACCCATCACCGAGGTGTCATCCGCAAACGCTTAATCCCATTACGGTTTATCGATAGC 968
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 900 CGTACCCATCACCGAGGTGTCATCCGCAAACGCTTAATCCCATTACGATTCATCGATAGC 959
Query 969 AATGGAAAAGAGTTAAACCAGAAAATTGCGGCTGGAGCTGAAGTAGTAGAATCAGGAACG 1028
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 960 AATGGAAAAGAGGTAAACCAGAAAATCGCGGCTGGAGCTGAAGTAGTTGAATCAGGAACG 1019
Query 1029 GGCAAGAAAATGGGGACGGTTTCAACAGCTCTGGGTAGCCGGGGAATGGGTGTAATGAGG 1088
|||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct 1020 GGCAAGAAAATGGGAACGGTTTCAACGGCTTTGGGTAGCCGAGGAATGGGTGTAATGAGG 1079
Query 1089 GTAGAGGAAGCCTTTAAACCATCAGCTGAATTAGCAGTAAAGGACTCAGAGGAGGTGAAA 1148
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1080 GTAGAGGAAGCCCTTAAACCATCAGCTGAATTAACAGTAAAGGACTCAGAGGACGTGAAA 1139
Query 1149 GTCGAGGCAATCAAACCAACATGGTGGCCAGCTGAATGGTTCCAACAGAATCAATCAGGA 1208
||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1140 GTCGAGGCAATCAGACCAACATGGTGGCCAGCTGAGTGGTTTCAACAGAATCAATCAGGA 1199
Query 1209 GTTGCTGCAGCGTAGTAACTTACTAAGATTATTTTTGCAGTTGaaaaaaaTAAAGTTGGA 1268
||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 1200 GTTGCTGCAGCCTAGTAACTTACTAAGATTATTTTTGCAGTTTAAAAAA-TAAAGTTGAA 1258
Query 1269 TACTTTCCGGCGAGGTTTCTGTACTGGAAAGCAACAAGCTCGTAGCTTTCATTGTATTCC 1328
|||||||||||||||| | | ||||||||||||| ||||||||||||||||
Sbjct 1259 TACTTTCCGGCGAGGT------A----A--GCAACAAGCTCGTCGCTTTCATTGTATTCC 1306
Query 1329 ACTATTTAACTAATAAATGTTGGAACCTTCCGGCGAGTTTATAGCCGTCGGATAACTTTG 1388
||| | |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 1307 ACTGTCTAACTAATAAATGTTGGAACCTTCCGGCGAGTTT-TAGCCGCCGGATAATTTTG 1365
Query 1389 TACTAACTGCTACAAATTTTGTTGT 1413
|||||| |||||||||||| |||||
Sbjct 1366 TACTAATTGCTACAAATTTGGTTGT 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5