BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12140.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327342 jgi|Araly1|327342|fgenesh1_pm.C_scaffold_6002562 734 0.0
Ahg924347 jgi|Araly1|924347|scaffold_105628.1 484 2e-136
Ahg924350 jgi|Araly1|924350|scaffold_105631.1 248 3e-65
> Ahg327342 jgi|Araly1|327342|fgenesh1_pm.C_scaffold_6002562
Length=612
Score = 734 bits (397), Expect = 0.0
Identities = 546/617 (88%), Gaps = 13/617 (2%)
Strand=Plus/Plus
Query 1 ATGAATGATCCCATTCCCAAACCCATAGT-GAGCGTTCAGGTCCAAGCT--GTGA-AAGT 56
||||||||||| |||||||||||| |||| || |||||||| |||||| | || |||
Sbjct 1 ATGAATGATCCAATTCCCAAACCCGTAGTGGA-AGTTCAGGTTCAAGCTGAGAGACAAGA 59
Query 57 CTCTACAAACTCGATCTTCCTCATCGTCAATACCATTAAGGATGAGATCCTTATAAACCC 116
| ||||||||| ||| | |||||| |||||||||| ||||||||||||||| |||||||
Sbjct 60 ATATACAAACTCAATCCTGCTCATCATCAATACCATAAAGGATGAGATCCTTGTAAACCC 119
Query 117 TGTCACTGGCCATCGAGCCG-AAACGTCCACTCCGCTTTCCTATAAATCACTTCCCATCA 175
|| | ||||||||||| ||| ||| ||||||||||||||||||||| ||||||| |||||
Sbjct 120 TGCCGCTGGCCATCGAACCGTAAA-GTCCACTCCGCTTTCCTATAATTCACTTCGCATCA 178
Query 176 ATTTCAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCCACGATCAACTCC 235
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 179 ATTTCAGTGTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCTACGATCGACTCC 238
Query 236 ATAGCGACGACAATTGGTTGTGCG-ATCACTTAGTCCCAAAGATCTCAACGGCTGCAATC 294
||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 239 ATAGCGACGACCATTGGTTGTGCGAAT-ACTTAGTCCCAAAGATCTCAACGGCTGCAATC 297
Query 295 AACGCAGGTTTTATGAACAACGGCGTTGAATTGACCGTTG-GCGTCACAGTTACTTACCA 353
||| |||||||| | |||||||||||||||||| || || |||||||||||||||||||
Sbjct 298 AACTCAGGTTTTGGGTACAACGGCGTTGAATTGAACG-TGAGCGTCACAGTTACTTACCA 356
Query 354 GTATGTCCATGTCGAGGAGACATCATCAAAGGAATCGAGGATGGTTCGACTAGGGAGCAT 413
||| | | ||| || ||| | |||| ||||| ||||||||||||| ||||||||| ||
Sbjct 357 GTACGAACGTGTGGACGAGGCCTCATTAAAGGTATCGAGGATGGTTTTACTAGGGAGGAT 416
Query 414 GAAAGCAGAGGAATTGAAGAGTTTTAACATGGAAACAGATTCGTGTTCCATCTGTCTACA 473
||||||||||| ||||||||| | |||||||||||||| |||||||| || ||||||||
Sbjct 417 AAAAGCAGAGGAGTTGAAGAGTGTGAACATGGAAACAGAGTCGTGTTCAATTTGTCTACA 476
Query 474 GAGTCTAGTCTCCAGTTCGAAAACAGGACCCACTCGCATGAGTTGTTCCCATGTCTTCCA 533
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 GAGTCTTTTCTCCAGTTCGAAAACATCACCCACTCGCATGAGTTGTTCCCATGTCTTCCA 536
Query 534 T-AGTAGCTGTCTCGTGGAGTGGCTCAAGAGAAAAAACACTTGCCCGATGTGTCGGACTG 592
| || |||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 537 TAAG-GGCTGTCTCGTGGAGTGGCTCTACCGCAAAAACACTTGCCCGATGTGTCGGACTG 595
Query 593 TGCTCTACGATCGATGA 609
|||||||||||| ||||
Sbjct 596 TGCTCTACGATCAATGA 612
> Ahg924347 jgi|Araly1|924347|scaffold_105628.1
Length=508
Score = 484 bits (262), Expect = 2e-136
Identities = 400/465 (86%), Gaps = 15/465 (3%)
Strand=Plus/Plus
Query 97 GATGAGATCCTTATAAACCCTGTCACTGGCCATCGAGCCGAAACGTCCACTCCGCTTTCC 156
|||||||||||| ||||||||| ||| ||||| ||| ||| |||||| | ||||||||||
Sbjct 48 GATGAGATCCTTGTAAACCCTGCCACCGGCCACCGAACCGTAACGTCAATTCCGCTTTCC 107
Query 157 TATAAATCACTTCCCATCAATTTCAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCG 216
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 108 TATAAATCACTTCCCATCAATTCCAGTCTCCCTAGCTGTAGTCACCACCACATCCAATTG 167
Query 217 TTACTCCACGATCAACTCCATAGCGACGACAATTGGTTGTGCGA-TCACTTAGTCCCAAA 275
|||||||| |||| |||| ||||||| ||| | ||||||||||| | |||||||||||||
Sbjct 168 TTACTCCAGGATCGACTCAATAGCGATGACCACTGGTTGTGCGAAT-ACTTAGTCCCAAA 226
Query 276 GATCTCAACGGC---TGCAATCAACGCAGGTTTTATGAACAACGGCGTTGAATTGACCGT 332
|||||||||||| |||||||||| |||||||| | |||| |||||| | ||||||||
Sbjct 227 GATCTCAACGGCGCCTGCAATCAACTCAGGTTTTGGGTACAATGGCGTTCATTTGACCGT 286
Query 333 TG-GCGTCACAGTTACTTACCAGTA-TGTCCATGTCGAGGAGACATCATCAAAGGA-ATC 389
| | || | ||||| ||| | ||| | |||||||||| |||| ||||| |||| | |||
Sbjct 287 -GAGTGTTATAGTTAGTTATCGGTACT-TCCATGTCGACGAGAGATCATTAAAG-ATATC 343
Query 390 GAGGATGGTTCGACTAGGGAGCATGAAAGCAGAGGAATTGAAGAGTTTTAACATGGAAAC 449
|||||||||| || |||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 344 AAGGATGGTTCTACAAGGGAGCATGAAAGCAGAAAAATTGAAGAGTTTGAAGATGGAAAC 403
Query 450 AGATTCGTGTTCCAT-CTGTCTACAGAGTCTAGTCTCCAGTTCGAAAACAGGACCCACTC 508
||| || ||||| || | |||| |||||||||||||||||||||||||||| ||||||||
Sbjct 404 AGAGTCCTGTTCAATTC-GTCTCCAGAGTCTAGTCTCCAGTTCGAAAACAGTACCCACTC 462
Query 509 GCATGAGTTGTTCCCATGTCTTCCATAGTAGCTGTCTCGTGGAGT 553
||||||||| | | ||||||||||||| | | |||||||| ||||
Sbjct 463 GCATGAGTT-T-CACATGTCTTCCATAATGGATGTCTCGTTGAGT 505
> Ahg924350 jgi|Araly1|924350|scaffold_105631.1
Length=338
Score = 248 bits (134), Expect = 3e-65
Identities = 168/185 (91%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 60 TACAAACTCGATCTTCCTCATCGTCAATACCATTAAGGATGAGATCCTTATAAACCCTGT 119
||||||||| ||| |||||||| |||||||||| ||||||||||||||| |||| ||||
Sbjct 95 TACAAACTCAATCCTCCTCATCATCAATACCATAAAGGATGAGATCCTTGTAAATCCTGC 154
Query 120 CACTGGCCATCGAGCCGAAACGTCCACTCCGCTTTCCTATAAATCACTTCCCATCAATTT 179
||| ||||||| | ||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 155 CACAGGCCATCAAACCGTAACGTCAATTCCGCTTTCCTATAAATCACTTCCCATCAATTT 214
Query 180 CAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCCACGATCAACTCCATAG 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 215 TAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCCACGATTGACTCTATAG 274
Query 240 CGACG 244
|||||
Sbjct 275 CGACG 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5