BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12150.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327342 jgi|Araly1|327342|fgenesh1_pm.C_scaffold_6002562 521 3e-147
Ahg924347 jgi|Araly1|924347|scaffold_105628.1 377 7e-104
Ahg924350 jgi|Araly1|924350|scaffold_105631.1 291 1e-77
> Ahg327342 jgi|Araly1|327342|fgenesh1_pm.C_scaffold_6002562
Length=612
Score = 521 bits (282), Expect = 3e-147
Identities = 455/535 (85%), Gaps = 25/535 (5%)
Strand=Plus/Plus
Query 72 ACAAGGAA-ATACAAACTCGATCTTCCTCATCGTCAATACCATTAAGGATGAGATCCTTA 130
|||| ||| |||||||||| ||| | |||||| |||||||||| |||||||||||||||
Sbjct 54 ACAA-GAATATACAAACTCAATCCTGCTCATCATCAATACCATAAAGGATGAGATCCTTG 112
Query 131 TAAACCCTGGCACTGGCCATCGAACCGCAACGTCCACTCCGCTTTCCTATAAATCACTTC 190
||||||||| | ||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 113 TAAACCCTGCCGCTGGCCATCGAACCGTAAAGTCCACTCCGCTTTCCTATAATTCACTTC 172
Query 191 CCATCAATTACACTCTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCCATGATC 250
|||||||| || | |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 173 GCATCAATTTCAGTGTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCTACGATC 232
Query 251 GACTCCATAGAGACGACCATTGGTTGTGCGA-TCACTTAGTCCCAAAGATCTCAA-G--T 306
|||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | |
Sbjct 233 GACTCCATAGCGACGACCATTGGTTGTGCGAAT-ACTTAGTCCCAAAGATCTCAACGGCT 291
Query 307 GCTATCAGCTCAGGTTTTG--T---------T-GACTTGACCGTGAGCGTCGCGGTTACT 354
|| |||| ||||||||||| | | || |||| |||||||||| | ||||||
Sbjct 292 GCAATCAACTCAGGTTTTGGGTACAACGGCGTTGAATTGAACGTGAGCGTCACAGTTACT 351
Query 355 TACAAGTACGTCCGTGTCGACGAGGCAGCATTAAAGATATCGAGGATGGTTCTACAAGGG 414
||| |||||| ||||| |||||||| |||||||| |||||||||||||| ||| ||||
Sbjct 352 TACCAGTACGAACGTGTGGACGAGGCCTCATTAAAGGTATCGAGGATGGTTTTACTAGGG 411
Query 415 TTCATGAGCGTAGAGGAAACAAAGAGTTTGAAC--G----CAGAGTCGTGTTCCATTTGT 468
|| | | |||||| |||||| ||||| | ||||||||||||| ||||||
Sbjct 412 AGGATAAAAGCAGAGGAGTTGAAGAGTGTGAACATGGAAACAGAGTCGTGTTCAATTTGT 471
Query 469 CTCCAGAGTCTAGTCTCCAGTTCGAAAACAGCACCCACTCGCATGAGTTGTTCCCATGTC 528
|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 472 CTACAGAGTCTTTTCTCCAGTTCGAAAACATCACCCACTCGCATGAGTTGTTCCCATGTC 531
Query 529 TTCCACAATGGTTGTCTCGTGGAGTGGCTAAACCGCAAAAACACTTGCCCGATGT 583
||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 532 TTCCATAAGGGCTGTCTCGTGGAGTGGCTCTACCGCAAAAACACTTGCCCGATGT 586
> Ahg924347 jgi|Araly1|924347|scaffold_105628.1
Length=508
Score = 377 bits (204), Expect = 7e-104
Identities = 383/464 (83%), Gaps = 34/464 (7%)
Strand=Plus/Plus
Query 118 GATGAGATCCTTATAAACCCTGGCACTGGCCATCGAACCGCAACGTCCACTCCGCTTTCC 177
|||||||||||| ||||||||| ||| ||||| ||||||| |||||| | ||||||||||
Sbjct 48 GATGAGATCCTTGTAAACCCTGCCACCGGCCACCGAACCGTAACGTCAATTCCGCTTTCC 107
Query 178 TATAAATCACTTCCCATCAATTACACTCTCCCTAGTTGTAGTCACCACCACATCCAATCG 237
|||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |
Sbjct 108 TATAAATCACTTCCCATCAATTCCAGTCTCCCTAGCTGTAGTCACCACCACATCCAATTG 167
Query 238 TTACTCCATGATCGACTCCATAGAGACGACCATTGGTTGTGCGA-TCACTTAGTCCCAAA 296
|||||||| ||||||||| |||| || ||||| ||||||||||| | |||||||||||||
Sbjct 168 TTACTCCAGGATCGACTCAATAGCGATGACCACTGGTTGTGCGAAT-ACTTAGTCCCAAA 226
Query 297 GATCTCAA-GT-GC-T--A-TCAGCTCAGGTTTTG--T----TGAC-TT-----GACCGT 338
|||||||| | || | | ||| ||||||||||| | || | || ||||||
Sbjct 227 GATCTCAACGGCGCCTGCAATCAACTCAGGTTTTGGGTACAATGGCGTTCATTTGACCGT 286
Query 339 GAGCGTCGCGGTTACTTA-CAAGTACGTCCGTGTCGACGAG-GCAGCATTAAAGATATCG 396
||| || |||| ||| | |||| ||| |||||||||| | | |||||||||||||
Sbjct 287 GAGTGTTATAGTTAGTTATCG-GTACTTCCATGTCGACGAGAG-ATCATTAAAGATATCA 344
Query 397 AGGATGGTTCTACAAGGGTTCATGAGCGTAGAGGAAACA-AAGAGTTTGAAC--G----C 449
|||||||||||||||||| ||||| | ||| ||| ||||||||||| | |
Sbjct 345 AGGATGGTTCTACAAGGGAGCATGAAAGCAGAA-AAATTGAAGAGTTTGAAGATGGAAAC 403
Query 450 AGAGTCGTGTTCCATTTGTCTCCAGAGTCTAGTCTCCAGTTCGAAAACAGCACCCACTCG 509
|||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 404 AGAGTCCTGTTCAATTCGTCTCCAGAGTCTAGTCTCCAGTTCGAAAACAGTACCCACTCG 463
Query 510 CATGAGTTGTTCCCATGTCTTCCACAATGGTTGTCTCGTGGAGT 553
|||||||| | | ||||||||||| ||||| |||||||| ||||
Sbjct 464 CATGAGTT-T-CACATGTCTTCCATAATGGATGTCTCGTTGAGT 505
> Ahg924350 jgi|Araly1|924350|scaffold_105631.1
Length=338
Score = 291 bits (157), Expect = 1e-77
Identities = 232/267 (87%), Gaps = 10/267 (4%)
Strand=Plus/Plus
Query 1 ATGAATGATCCCATTCCCAAAGC-CGTAGT-GAGCGTTCAGGTCCAAGCTGAGAGAGTCT 58
||||||||||||||||||||| | || ||| || ||||||||||||| |||| || |
Sbjct 21 ATGAATGATCCCATTCCCAAA-CTCGCAGTGGA-AGTTCAGGTCCAAG-AGAGA-AG--T 74
Query 59 CTCGCTCTCCATCACAAGGAAATACAAACTCGATCTTCCTCATCGTCAATACCATTAAGG 118
|| |||||||||| || || |||||||||| ||| |||||||| |||||||||| ||||
Sbjct 75 CT--CTCTCCATCAGAAAGATATACAAACTCAATCCTCCTCATCATCAATACCATAAAGG 132
Query 119 ATGAGATCCTTATAAACCCTGGCACTGGCCATCGAACCGCAACGTCCACTCCGCTTTCCT 178
||||||||||| |||| |||| ||| ||||||| ||||| |||||| | |||||||||||
Sbjct 133 ATGAGATCCTTGTAAATCCTGCCACAGGCCATCAAACCGTAACGTCAATTCCGCTTTCCT 192
Query 179 ATAAATCACTTCCCATCAATTACACTCTCCCTAGTTGTAGTCACCACCACATCCAATCGT 238
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 193 ATAAATCACTTCCCATCAATTTTAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCGT 252
Query 239 TACTCCATGATCGACTCCATAGAGACG 265
||||||| ||| ||||| |||| ||||
Sbjct 253 TACTCCACGATTGACTCTATAGCGACG 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5