BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G12210.1

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943123 jgi|Araly1|943123|scaffold_603667.1                        193    2e-48
  Ahg924347 jgi|Araly1|924347|scaffold_105628.1                        124    6e-28


> Ahg943123 jgi|Araly1|943123|scaffold_603667.1
Length=223

 Score =  193 bits (104),  Expect = 2e-48
 Identities = 163/191 (85%), Gaps = 5/191 (3%)
 Strand=Plus/Plus

Query  422  AGGAATTGAAGAGTTTGAAGATGGAAACAGAGTCTTGTTCAATCTGTCTTGAGAATCTAG  481
            |||||||||||||||||||||||||||||||||| ||||| ||||  || ||||||||  
Sbjct  1    AGGAATTGAAGAGTTTGAAGATGGAAACAGAGTCGTGTTCCATCTACCTCGAGAATCT--  58

Query  482  TCTCCGGTCCAAAACCTAGCGACCTCACACGCATGACTTGTTCTCATGTCTTCCACAATC  541
             |||||||| |||||||| |||||| ||||| ||||||||||| ||||||||||||||||
Sbjct  59   -CTCCGGTCTAAAACCTATCGACCTAACACGGATGACTTGTTCCCATGTCTTCCACAATC  117

Query  542  CCTGTCTCTTGGAGTGGTTCATGCGTAAAAACACTTGTCCCCTGTGTCGGACGGAGCTCT  601
              ||||||||||||| ||||| |||||||  ||||||||   |||||   || | |||||
Sbjct  118  G-TGTCTCTTGGAGTTGTTCAAGCGTAAAG-CACTTGTCTGTTGTGTTTTACAGTGCTCT  175

Query  602  ACGATCGATGA  612
            | |||||||||
Sbjct  176  AGGATCGATGA  186


> Ahg924347 jgi|Araly1|924347|scaffold_105628.1
Length=508

 Score =  124 bits (67),  Expect = 6e-28
 Identities = 137/169 (81%), Gaps = 11/169 (7%)
 Strand=Plus/Plus

Query  391  AGGATAGTTCTACTAGGAAGGATAAAAGCAGAGGAATTGAAGAGTTTGAAGATGGAAACA  450
            ||||| ||||||| ||| || || ||||||||  ||||||||||||||||||||||||||
Sbjct  345  AGGATGGTTCTACAAGGGAGCATGAAAGCAGAAAAATTGAAGAGTTTGAAGATGGAAACA  404

Query  451  GAGTCTTGTTCAAT-CTGTCTTGAGAATCTAGTCTCCGGTCC-AAAACCTAGCGACCTCA  508
            ||||| |||||||| | ||||  ||| |||||||||| || | |||||  ||  ||| ||
Sbjct  405  GAGTCCTGTTCAATTC-GTCTCCAGAGTCTAGTCTCCAGTTCGAAAAC--AGT-ACC-CA  459

Query  509  CACGCATGACTTGTTCTCATGTCTTCCACAATCCCTGTCTC-TTGGAGT  556
            | ||||||| || | | ||||||||||| |||   |||||| ||| |||
Sbjct  460  CTCGCATGAGTT-T-CACATGTCTTCCATAATGGATGTCTCGTTG-AGT  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22378152279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5