BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12230.1
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490031 jgi|Araly1|490031|fgenesh2_kg.6__3165__AT4G12230.1 2134 0.0
> Ahg490031 jgi|Araly1|490031|fgenesh2_kg.6__3165__AT4G12230.1
Length=1380
Score = 2134 bits (1155), Expect = 0.0
Identities = 1311/1384 (95%), Gaps = 20/1384 (1%)
Strand=Plus/Plus
Query 101 CGGATGTTGAAAATCTCCGATCGGCGATGAAAGGCGTCTCTTCGACGCCCGGAGATTACG 160
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 CGGATGTTGAAACTCTCCGATCGGCGATGAAAGGCGTCTCTTCGGCGCCCGGAGATTACG 60
Query 161 TCTACTTTAAATCTCAGGTTCCTCTTCACAAGATTCCCATTGGGACAAAGCAATGGCGTT 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTACTTTAAATCTCAGGTTCCTCTTCACAAGATTCCCATTGGGACAAAGCAATGGCGTT 120
Query 221 ACTATGACTTTGGTCCAAAGACTGTTCCTCCGCTCATATGTATTCCTGGAATTGCAGGAA 280
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 ACTATGACTTTGGTCCAAAGACTGTTCCTCCGCTCATATGTATTCCTGGAATCGCAGGAA 180
Query 281 CTGCAGATGTTTACTATAAACAGATTATGGCACTCTCTATGAAGGGTTATCGGGTAATCT 340
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTGCAGATGTTTACTATAAACAGATTATGGCACTCTCTATGAAGGGTTATCGGATAATCT 240
Query 341 CAGTTGATATTCCACGGGTTTGGAATTATCATGAGTGGATTCAAGCATTTGAGAAGTTCT 400
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 CAGTTGACATTCCACGGGTTTGGAATTATCATGAGTGGATTCAAGCATTTGAGAAATTCT 300
Query 401 TGGACACCATTGATGTTCATCACGTGCATCTCTACGGTACTTCCCTTGGAGGCTTCTTAG 460
|||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 301 TGGATACCATTGATGTTCATCACGTGCATCTCTATGGTACCTCTCTTGGAGGCTTCTTAG 360
Query 461 CACAACTCTTTGCTCATCACCGTCCAAGGCGGGTTAAATCATTAGTTCTATCAAATACAT 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACAACTCTTTGCTCATCACCGTCCAAGGCGGGTTAAATCATTAGTTCTATCAAATACAT 420
Query 521 ATTTGGATACTCGTACTTTTGCTACTGCAATGCCATGGGCTCCTTTTGTCAGTTGGACCC 580
||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||| |
Sbjct 421 ATTTGGATACTCGCACTTTTGCTGCTGCTATGCCATGGGCTCCTTTTGTTAGTTGGACTC 480
Query 581 CTTCTTTTTTGCTTAAACGATACGTCTTAACAGGAATTCGTGACGGACCTCATGAACCCT 640
||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 481 CTTCTTTTTTGCTGAAACGATACGTCTTAACAGGAATACGTGATGGACCTCACGAACCCT 540
Query 641 TTATAGCTGACTCTGTCGACTTTGCTGTTTCTCAGGTGGAGACATTGTCGAAAGATGATT 700
|||| ||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 541 TTATCGCTGATTCTGTCGACTTTGCTGTGTCTCAGGTTGAGACGTTGTCAAAAGATGATT 600
Query 701 TGGCTTCCCGGTTAACTTTAACTGTGGATGCTGCTTCCGTGGGATCTCTACTACTCTCTG 760
|||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 601 TGGCTTGCCGGTTAACTTTAACAGTGGATGCAGCTTCTGTGGGATCTCTACTACTCTCTG 660
Query 761 ATTCTTC-AGTTACTATAATGGATACAAATGATTACTGCGCAATACCACAACATCTTAAA 819
|||| || | | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 ATTCCTCCA-TCACTATAATGGATACGAATGATTACTGCGCAATACCACAACATCTTAAA 719
Query 820 GATGAACTAACAGAGAGGTATCCTGAAGCAAGGAGAGCTTACTTAAAGAGTGGAGGAGAT 879
|||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 720 GATGAACTTACAGAGAGGTATCCCGAAGCAAGGAGAGCTTACTTAAAGACCGGAGGAGAT 779
Query 880 TTCCCATTCCTATCACGGCCCGACGAAGTCAATTTGCATCTACAGCTACACTTAAGGCGG 939
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 780 TTCCCATTCCTATCACGGCCCGACGAAGTCAATTTGCATCTACAGCTGCACCTAAGGCGG 839
Query 940 GTAGGAGTAGAACCACGACCCGAAGTGGTTAAAAGCATTCCAAAAGGCGGCGCAGATGGC 999
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 GTAGGAGTAGAACCACGACCCGAAGTGGTTAAAAGCATTTCAAAAGGCGGCGCAGATGGC 899
Query 1000 ACAGACGGTAGCAGCCAGAGCAAGAAGAAGAGTGATGAGGAGAAGGACGACCGTAACAAC 1059
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 ACAGACGGAAGCAGCCAGAGCAAGAAGAAGACTGATGAGGAGAAGGACGACCGTAACAAC 959
Query 1060 AATATGCCTCAAGACTCTGGAAGCTCATCTTCAGATCAATCACCGACATTTCCAGAAAGT 1119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AATATGCCTCAAGGCTCTGGAAGCTCATCTTCAGATCAATCACCGACATTTCCAGAAAGT 1019
Query 1120 TCCGGAAGCTCCAACGATCCGCCTTTACCCACAGACACCATTCAGTTAC-TGAGTTCATC 1178
||||||||||||||||||||||| ||||| ||||||||||||||||| | | ||||||||
Sbjct 1020 TCCGGAAGCTCCAACGATCCGCCGTTACCAACAGACACCATTCAGTTGCAT-AGTTCATC 1078
Query 1179 ATTGAACAACCTCATATTAGTTCAACTCGCTGGTGAAGTTTATCAGTCTTGTGTGGTTTT 1238
| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1079 AATGAACAAACTCATATTAGTTCAACTCGCTGGTGAAGTTTATCAGTCCTGTGTGGTTCT 1138
Query 1239 CACATTGTGTTACTGTACATTGGTTTTGGTTCACGGTGGTGGTTTTATCTCCAGACAATT 1298
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CACGTTGTGTTACTGTACATTGGTTTTGGTTCACGGTGGTGGTTTTATCTCCAGACAATT 1198
Query 1299 Ggtttagtgttctttatttatttatt-acctctttt--gttgtttaaatcttttt-actt 1354
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct 1199 GGTTTAGTGTTCTTTATTTATTTATTTACCTCTTTTTTGTTGTTTAAATCTTTTTTACTT 1258
Query 1355 ttgggtttctttgatctgttttggtttctcttgactttttgtataagtttgTA-AGACAA 1413
||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| |
Sbjct 1259 TTGGGTTTCTTTGATCTGTTTTGGTTTCTCTTGACTTTT-GTGTAAGTTTG-ACAGACGA 1316
Query 1414 AGCAAGAGTTCTCTGTATGTTTCA-A-GTT--A--TTA---CACTTTTGGAAGAAAACTT 1464
|||||||||||| ||||||||||| | ||| | ||| |||||||||||||||||||
Sbjct 1317 AGCAAGAGTTCTTTGTATGTTTCATATGTTTCAAGTTATTACACTTTTGGAAGAAAACTT 1376
Query 1465 TGGT 1468
||||
Sbjct 1377 TGGT 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56106930885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5