BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12240.1
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490032 jgi|Araly1|490032|fgenesh2_kg.6__3166__AT4G12240.1 1914 0.0
> Ahg490032 jgi|Araly1|490032|fgenesh2_kg.6__3166__AT4G12240.1
Length=1317
Score = 1914 bits (1036), Expect = 0.0
Identities = 1232/1325 (93%), Gaps = 19/1325 (1%)
Strand=Plus/Plus
Query 1 GCCGAACTCTAATCGGATCCGGGTCGGGTATGTAATGTAAACCGGG-TTTTTTGAAGCCC 59
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 GCCGAACTCTAATCGGATCCGGGTCGGGTATGTAATGTAACCCGGGTTTTTTTGAAGCCT 60
Query 60 CCATCTTCTCCGTCGATTTTAAAGATCCCGGCGATGTTTTCAAGATTTGTCCTAAAAAGT 119
|||||||||||||||||||| ||||| ||| |||||||||||||||| ||| | | || |
Sbjct 61 CCATCTTCTCCGTCGATTTTGAAGATTCCGACGATGTTTTCAAGATTCGTCTTGAGAATT 120
Query 120 TGGAGACCTAAAACCCAAACCACATCTCTCAATTCAATCAAAGGTTTTAGCTTTAGCTCT 179
|||| ||| ||||| ||| ||||||||||||||||||||||||||||||| | | |
Sbjct 121 TGGAAACCAAAAACTCAATTCACATCTCTCAATTCAATCAAAGGTTTTAGC--T---T-T 174
Query 180 AGCTCGATAAACCCTAAACCCAAAATCCGAGTAGGGGTTTGGTGGGATCTAGACAACAAA 239
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 175 AGCTCGATAAACCCTAAACCAAAAATCCGAGTGGGGGTTTGGTGGGATCTAGACAACAAA 234
Query 240 CCACCAGCCTCTTTCCCGCCTTACGACGCCGCCGTCAAGCTCCGAACCGCCGCGTCGTCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CCACCAGCCTCTTTCCCGCCTTACGACGCCGCCGTCAAGCTCCGAACCGCCGCGTCGTCT 294
Query 300 TTCGGAACCGTGAAGCTAATGATGGCGTATGCGAATCGTCACGCCTTTAGCTACGTTCCT 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTCGGATCCGTGAAGCTAATGATGGCGTATGCGAATCGTCACGCCTTTAGCTACGTTCCT 354
Query 360 TTAGAAGTTCGAGAACAGAGGAAAGATAGGAAATTGCTAAACAAATTAGAGAACAAAGGT 419
|||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct 355 TTAGAAGTAAGAGAACAGAGGAAAGATAGAAAATTGTTAAACCAATTAGAGAACAAAGGT 414
Query 420 TTAGTTAAACCACCGGAGCCTTACTTCTGCGGTGTTTGTGACCGGAGATTCTACACTAAC 479
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 415 TTAGTTAAACCGCCGGAGCCTTACTTCTGCGGCGTTTGTGACCGGAGATTCTACACGAAT 474
Query 480 GAGAAGCTAATTAATCATTTCAAGCAGATTCATGAGACAGAGAATCAGAAACGTATGAGA 539
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 475 GAGAAGCTAATCAATCATTTTAAGCAGATTCATGAGACTGAGAATCAGAAACGTATGAGA 534
Query 540 CAGATTGAATCTTCGAAAGGACATCGAAGAGTGAGACTTGTGGCTAAGTATTCGATGAAG 599
||||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||
Sbjct 535 CAGATTGAATCTTCGAAAGGACATCAAAGAGTGAGGCTTGTGGCTAAGTACTCCATGAAG 594
Query 600 ATTGAGAAGTATAAAAGAGCGGCGAGGAATGTTTTGACTCCGAAGGAAGGTTACGGTTTA 659
||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||
Sbjct 595 ATTGAGAAGTATAAAAGAGCGGCGAGGAACATTTTGACGCCGAAAGAAGGTTACGGGTTA 654
Query 660 GCTGATGAGCTGAAACGAGCTGGTTTTTGGGTGAAGATGGTTAGTGATAAGCCAGATGCT 719
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 655 GCGGATGAGCTGAAACGAGCTGGTTTTTGGGTGAAAATGGTGAGTGATAAGCCAGAAGCT 714
Query 720 GCTGATAAGGCGTTGAAGGAACATTTGGTTGAAGTGATGGATAAGAGAGAAGTGGAGTGT 779
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||
Sbjct 715 GCTGATAAGGCGTTGAAGGAACATTTGGTGGAAATGATGGATAAGAGAGAAGTGGAATGT 774
Query 780 GTTGTTTTAGTGTCTGATGATTCTGATTTTGCGGGGATTTTGTGGGAAGCTAAGGAGAGG 839
||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 775 GTTGTTTTAGTGTCTGATGATTCCGATTATGCGGGGATTTTGTGGGAAGCGAAGGAGAGG 834
Query 840 TGTTTGAGGACGGTTGTGATTGGAGATTCGAACGAAGGTGCGCTGAAGCGAGTAGCGGAT 899
|||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||
Sbjct 835 TGTTTGAGGACGGTTGTGATTGGAGATTCGAATGAAGGTGCGTTGAAGAGAGTAGCTGAT 894
Query 900 GTTGCGTATTCGTGGAAGGAAGT-GACGATGGGGAAGGCGAAGAAGGAAGTTGAGAAAGT 958
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 895 GTTGCGTATTCGTGGAAGGAAGTTGT-GATGGGGAAGGCGAAGAAGGAAGTTGAGAAAGT 953
Query 959 TGTGGGGAAGTGGAAGGATAGAGATGTGTTGAAGAAGTTGGAGTGGACTTATGATCCTGC 1018
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 954 TGTGGGGAAGTGGAATGATAGAGATGTGTTGAAGAAGTTGGAGTGGAGTTATGATCCTGC 1013
Query 1019 TTTGGAGAAAGAGAGAGGTGGTTCTTGCGGTGTTTGGGATTACGAGTTTGATT---ATGA 1075
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1014 TTTGGAGAAAGAGAGAGGAGGTTCTTGCGGTGTTTGGGATTACGAGTTTGATTGTGATGA 1073
Query 1076 ---TGATGA-GA--TTGAGAATGGAACAGAGGTGGAACCTGTGGAGATTGGTGATGGTGT 1129
|||||| || ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1074 CGATGATGATGAGATTGAGAATGGAACAGAGGTGGAATCGGTGGAGATTGGAGATGGTGG 1133
Query 1130 TGACTGGTGGAAGATCGATACTGAAGATGGTGTTGGATCTTCAAGAACTTGTCGATAACA 1189
||| ||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 1134 TGATTGGTGGAAGATAGATAATGAAGATAGTGTTGGATCTTCAAGACCTTGTCGATAACA 1193
Query 1190 TCATCGCATATGTCGTGGTTGATTGCGCAGAGGAAGATAACATGGTATAGGCTAGAGAAC 1249
|||| |||| ||||| ||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 1194 TCATAGCAT-TGTCGAAATTGGTTGCGCAGAGGAAGTTAACATGGTCTAGGCTAGAGAAC 1252
Query 1250 AATCTTGTGAATCTATTGGCATATTACATAAACTTCAGGCTAGAGAACATTCATTGTTTC 1309
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AATTTTGTGAATCTATTGGCATATTACATAAACTTCAGGCTAGAGAACATTCATTGTTTC 1312
Query 1310 TTGTT 1314
|||||
Sbjct 1313 TTGTT 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212072265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5