BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12250.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490033 jgi|Araly1|490033|fgenesh2_kg.6__3167__AT4G12250.1 2143 0.0
> Ahg490033 jgi|Araly1|490033|fgenesh2_kg.6__3167__AT4G12250.1
Length=1613
Score = 2143 bits (1160), Expect = 0.0
Identities = 1320/1398 (94%), Gaps = 7/1398 (1%)
Strand=Plus/Plus
Query 4 CCTAACCCTAATCGACATTTTCTCCGATTTCTAAATCCTCCTCCGGTGAAAATGTCTCAC 63
|||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||
Sbjct 1 CCTAACCCTAATCGACATTTTCTCCGATTTCTGAAT--T-CTCCGGCGAAAATGTCTCAC 57
Query 64 CTTGATGATCTTCCTTCTACTCCCGGAAAGTACAAAACCGATAAAGTTCCACCGTACGGG 123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 58 CTTGATGATCTTCCTTCTACTCCCGGAAAGTACAAAACCGATAAAGTTCCTCCGTACGGG 117
Query 124 ATTCTCCACCACCACCGTTAcctccgtctctcaaaactcaccctttgggcttctctcttc 183
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 118 ATTCTCCACCACCACCGTTACCTCCGTCTCTCGAAACTCACGCTTTGGGCTTCTCTCTTC 177
Query 184 ctcgctctcttcctcttctacctcgttttatctcctcctccGTCACCATCTCGCCGGAAT 243
|||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 178 CTCGCTCTGTTTCTCTTCTACCTTGTTTTATCTCCTCCTCCGTCACCATCCCGCCGGAAT 237
Query 244 CTCAACGATTCTTCCTCCATTTCCGCCGCGAAATACGGCGGCTCTCACTGGGAGAAACAA 303
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 238 CTCAACGATTCTTCCTCAATTTCCGCCGCTAAATACGGTGGCTCTCACTGGGAGAAACAA 297
Query 304 GTCCGTAAATCCGCTCGTCCTAGGTCTCACGGCGGTTTAACGGTATTAGTCACCGGAGCT 363
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 GTTCGTAAATCCGCTCGTCCTAGGTCTCGCGGCGGTTTAACGGTATTAGTCACCGGAGCT 357
Query 364 TCCGGATTCGTCGGTACTCACGTCTCGATCGCGTTACGAAGACGCGGCGATGGTGTTCTA 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCCGGATTCGTCGGTACTCATGTCTCGATCGCGTTACGAAGACGCGGCGATGGTGTTCTA 417
Query 424 GGTCTCGACAATTTCAATCGATACTACGATCCAAAGCTTAAACGAGCAAGACAAGGCCTT 483
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 418 GGTCTTGACAATTTCAATCGGTACTACGATCCAAAGCTTAAACGAGCAAGACAAGGTCTT 477
Query 484 TTAGAAAGATCAGGTGTTTTCGTAGTCGAAGGCGATATAAACGACGCCGTTTTACTCAGA 543
|||||| |||||||||||||||| || ||||||||||| |||||||||||||| || |||
Sbjct 478 TTAGAACGATCAGGTGTTTTCGTTGTTGAAGGCGATATTAACGACGCCGTTTTGCTTAGA 537
Query 544 AAGCTCTTTGATGTTGTCCTCTTCACACATGTTATGCATCTCGCTGCTCAAGCTGGTGTG 603
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 AAGCTCTTTGATGTTGTCCTCTTCACACATGTTATGCATCTAGCTGCTCAAGCTGGTGTG 597
Query 604 CGTTACGCAATGCAAAACCCTGGCTCATATGTTAACAGTAACATTGCTGGGTTTGTGAAT 663
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 598 CGTTACGCAATGCAAAACCCAGGATCGTATGTGAACAGTAACATTGCTGGGTTTGTGAAT 657
Query 664 CTATTAGAAGTATCGAAATCAGCGAATCCGCAACCTGCTATAGTCTGGGCTTCCTCTAGC 723
|||||||||| |||||||||||||||||||| ||||| || || |||||||| ||||||
Sbjct 658 TTATTAGAAGTGTCGAAATCAGCGAATCCGCAGCCTGCGATTGTGTGGGCTTCGTCTAGC 717
Query 724 TCTGTTTATGGTCTGAATTCGAAAGTACCCTTTTCGGAGAAAGACCGTACCGATCAACCA 783
|||||||||||||| |||||||||||||| |||||||||||||| || || ||||||||
Sbjct 718 TCTGTTTATGGTCTCAATTCGAAAGTACCATTTTCGGAGAAAGATCGAACGGATCAACCG 777
Query 784 GCGAGTTTGTACGCAGCTACGAAGAAAGCAGGTGAAGGAATTGCGCATACTTACAATCAC 843
|||||||| ||||| || ||||||||||| ||||||||||||||||||||||| || ||
Sbjct 778 GCGAGTTTATACGCGGCGACGAAGAAAGCTGGTGAAGGAATTGCGCATACTTATAACCAT 837
Query 844 ATCTACGGATTATCG-TTAACGGGTTTGCGGTTTTTCACTGTCTATGGACCTTGGGGTAG 902
||||| || |||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 838 ATCTATGGTTTATCGCTT-ACGGGTTTGCGGTTTTTCACTGTTTATGGACCTTGGGGTAG 896
Query 903 ACCAGATATGGCGTATTTCTTCTTTACTAAAGATATTCTTAAAGGGAAGACGATTACTGT 962
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 897 ACCTGACATGGCGTATTTCTTCTTTACTAAAGATATTCTTAAAGGGAAGACGATTACGGT 956
Query 963 GTTTGAATCTCCTGATAAAGGTAGTGTTGCTAGGGACTTCACTTACATTGATGATATTGT 1022
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 957 TTTTGAATCTCCTGATAAAGGTAGTGTTGCTAGGGATTTCACTTACATTGATGATATTGT 1016
Query 1023 AAAAGGTTGTTTAGGTGCGTTAGATACTGCTGAGAAGAGTACTGGTAGTGGTGGTAAGAA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AAAAGGTTGTTTAGGTGCGTTAGATACTGCTGAGAAGAGTACTGGTAGTGGTGGTAAGAA 1076
Query 1083 GAAAGGTCCTGCTATGTTTAGGATTTATAATTTGGGGAATACTTCTCCTGTTCCTGTTAC 1142
|||||||||||| |||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 1077 GAAAGGTCCTGCCATGTTTAGGATTTATAATTTGGGGAATACTTCGCCTGTGCCGGTAAC 1136
Query 1143 TAAGCTTGTGACTATATTAGAGAAGCTTTTGAAGATGAAAGCTAAGAAAAAGATCATGCC 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TAAGCTTGTGACTATATTAGAGAAGCTTTTGAAGATGAAAGCTAAGAAAAAGATCATGCC 1196
Query 1203 TCTACCGAGGAATGGGGATGTTGAGTTTACTCATGCCAATATCACGTTAGCGCAAGCAGA 1262
| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1197 TTTACCGAGGAATGGGGATGTTGAGTTTACTCACGCGAATATCACGTTAGCGCAAGCAGA 1256
Query 1263 GCTCGGTTATAAACCTGCGGTTGATCTTGAGACGGGTTTGAAAAAGTTTGTGAAATGGTA 1322
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCTTGGTTATAAACCTGCGGTTGATCTTGAGACGGGTTTGAAAAAGTTTGTGAAATGGTA 1316
Query 1323 TATGGGTTTTTACACTGGCTCGAAGAAGAAGAGTTCTTGGTGAGCTCTGTCTCTCTGCT- 1381
||||||||||||||| || |||||||||||||||||||||||| |||| | ||||||||
Sbjct 1317 TATGGGTTTTTACACAGGGTCGAAGAAGAAGAGTTCTTGGTGATCTCTATGTCTCTGCTC 1376
Query 1382 TAAGTCATGGTCTCTGTT 1399
|| |||||||||||||||
Sbjct 1377 TA-GTCATGGTCTCTGTT 1393
Score = 326 bits (176), Expect = 4e-88
Identities = 208/222 (94%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 1445 CCGAGCACTTGCATTGCCAGGAAAA---AT-CACTTACGTATCTGCATTGTTTCTGTGTT 1500
|||||||||||||| || ||||||| | ||||||||| |||||||||||||||||||
Sbjct 1394 CCGAGCACTTGCATCGCGAGGAAAATGGCTACACTTACGTGTCTGCATTGTTTCTGTGTT 1453
Query 1501 GCTAGATTTTGCTTCATTTATTTGTTAGTAGATTTTGAGCAATGTACAGCTTCATCACTT 1560
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1454 GCTAGATTTTGCTTCATTTATTTGTTAGTAGA-TTTGAGCAATGTACAGCTTCATCACTT 1512
Query 1561 A-GATGTTTCAATTGTCGAAACTCAATTGTCTTTTCCATCATGTCGGAGGAATAAAGTAG 1619
| | |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1513 ATG-TGTTTCAATTGTGGAATCTCGATTGTCTTTTCCATCATGTCGGAGGAATAAAGTAG 1571
Query 1620 CTTGGATTTTGATGCATATACTCTGTAGTAATTCAATCTATT 1661
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 CTTGGATTTTGATGCATATACTCTGTAGTAATTCAATCTATT 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5