BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12300.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327347 jgi|Araly1|327347|fgenesh1_pm.C_scaffold_6002567 2338 0.0
Ahg490036 jgi|Araly1|490036|fgenesh2_kg.6__3170__AT4G12310.1 1709 0.0
Ahg895446 jgi|Araly1|895446|Al_scaffold_0006_3442 93.5 5e-18
> Ahg327347 jgi|Araly1|327347|fgenesh1_pm.C_scaffold_6002567
Length=1557
Score = 2338 bits (1266), Expect = 0.0
Identities = 1465/1561 (94%), Gaps = 14/1561 (1%)
Strand=Plus/Plus
Query 64 ATGTCTCCGATTTCAAATCTCTTTCCCGACAACACAATCAATCTCACTCCTTACGCAATT 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCCGATTTCAAATCTCTTCCCCGACAACACAATCAATCTCACTCCTTACGCAATT 60
Query 124 GTCATTCTCACCACTGTCTTCTCGATTCTATGGTATATCTTTAAGCGCTCGCCGCAACCG 183
||| ||||||| || ||||||||||||||||||| ||||| || |||||| ||||||||
Sbjct 61 CTCAGTCTCACCGCTATCTTCTCGATTCTATGGTACATCTTCAAACGCTCGACGCAACCG 120
Query 184 TCC-CTACCGCCTGGACCACGAGGGCTGCCTATAGTCGGGAACCTCCCGTTTCTTGATCC 242
|| ||||||||||||||| |||| || ||||| ||||||||||||||||||||||| ||
Sbjct 121 -CCTCTACCGCCTGGACCAAGAGGACTACCTATCGTCGGGAACCTCCCGTTTCTTGACCC 179
Query 243 GGACCTTCACACCTACTTCGCAAACCTCGCTCAAAGTCACGGTCCAATCTTTAAACTCAA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGACCTTCACACCTACTTCGCAAACCTCGCTCAAAGTCACGGTCCAATCTTTAAACTCAA 239
Query 303 TCTTGGCTCAAAGCTAACCATCGTAGTCAACTCTCCATCGCTGGCTCGAGAGATCTTGAA 362
|||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 240 TCTTGGCTCAAAACTAACCATCGTGGTCAACTCTCCAACTCTGGCTCGAGAGATCTTGAA 299
Query 363 AGATCAAGACATCAATTTCTCAAACCGAGACGTCCCTCTCACTGGCCGAGCCGCTACCTA 422
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 AGATCAAGACATCAATTTCTCAAACCGAGACGTACCTCTCACTGGCCGAGCCGCTACCTA 359
Query 423 TGGAGGTATAGACATCGTTTGGACACCATACGGTGCCGAATGGAGACAGCTTAGAAAAAT 482
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 360 TGGAGGTATAGACATCGTTTGGACACCATATGGCGCCGAATGGAGACAACTTAGAAAAAT 419
Query 483 ATGCGTCCTAAAACTCCTTAGCCGCAAAACTTTGGATTCTTTCTACGAGCTCCGACGCAA 542
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGCGTCCTCAAACTCCTTAGCCGCAAAACTTTGGATTCTTTCTACGAGCTCCGACGCAA 479
Query 543 AGAAGTCCGGGAAAGAACTAGATATTTGTACGAGCAAGGTCGAA-AACAATCCCCGGTTA 601
|||||||||||||||||| |||||| | ||||||||||||| || || ||||||||||||
Sbjct 480 AGAAGTCCGGGAAAGAACGAGATATCTATACGAGCAAGGTC-AACAAGAATCCCCGGTTA 538
Query 602 AAGTCGGAGATCAATTGTTTTTGACGATGATGAATCTAACGATGAATATGTTATGGGGAG 661
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAGTTGGAGATCAATTGTTTCTGACGATGATGAATCTAACGATGAATATGTTATGGGGAG 598
Query 662 GGTCGGTGAAAGCAGAGGAGATGGAGAGTGTTGGAACAGAGTTTAAAGGAGTGATTTCTG 721
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||
Sbjct 599 GGTCGGTGAAAGCAGAGGAGATGGAGAGTGTTGGAAAAGAGTTTAAGGGAGTTATCTCTG 658
Query 722 AAATTA-CTAGG-CTTTTGAGTGAGCCTAATGTTTCTGACTTTTTTCCTTGGCTAGCGAG 779
| ||| || || ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 659 AG-TTAACT-GGACTTTTGAGTGAGCCTAATGTTTCGGACTTTTTTCCGTGGCTAGCGAG 716
Query 780 GTTCGATCTTCAAGGACTTGTGAAGAGGATGGGTGTGTGTGCCCGCGAGCTTGATGCGGT 839
|| ||||||||||| ||||||||||||||| ||||||||||| | ||||| ||||||||
Sbjct 717 ATTTGATCTTCAAGGGCTTGTGAAGAGGATGCGTGTGTGTGCCGGAGAGCTCGATGCGGT 776
Query 840 ACTTGATCGAGCCATCGAGCAGATGAAACCGTTAAGAGGAAGAGATGATGATGAAG-T-- 896
||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 777 ACTTGATAGAGCCATAGAGCAGATGAAACCGTTAAGAGGAAGAGATGATGATGATGGTGA 836
Query 897 -T--AAAGACTTCTTGCAATATTTGATGAAATTAAAGGATCAAGAAGGTGACTCGGAGGT 953
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 837 ATGCAAAGACTTCTTGCAATATTTGATGAAGTTAAAGGACCAAGAAGGTGACTCGGAGGT 896
Query 954 TCCCATCACCATTAATCATGTCAAAGCCTTACTCACGGATATGGTGGTTGGTGGCACTGA 1013
|||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 897 TCCCATCAGCATTAATCATGTCAAGGCCGTACTCACGGATATGGTGGTTGGTGGCACAGA 956
Query 1014 CACATCGACAAACACGATAGAGTTTGCGATGGCAGAGCTAATGAGCAACCCGGAGCTGAT 1073
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 CACATCGACGAACACGATAGAGTTTGCGATGGCCGAGCTAATGAGCAACCCGGAGCTGAT 1016
Query 1074 CAAAAGAGCACAAGAAGAGCTAGATGAAGTTGTAGGCAAAGACAACATTGTTGAAGAATC 1133
|||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1017 AAAAAGAGCACAACAAGAGCTAGACGAAGTTGCAGGCAAAGACAACATTGTTGAAGAATC 1076
Query 1134 ACACATCACTAGACTTCCTTACATTTTAGCCATTATGAAAGAAACACTTAGGCTTCACCC 1193
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1077 ACACATCACAAGACTTCCTTACATATTAGCCATTATGAAAGAAACACTTAGGCTTCACCC 1136
Query 1194 AACCCTTCCTTTGTTAGTCCCTCACCGTCCGGCTGAAAACACCGTGGTGGGCGGCTACAC 1253
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1137 AACCCTTCCTTTGTTAGTCCCTCATCGTCCGGCTGAAAGCACCGTGGTGGGCGGCTACAC 1196
Query 1254 CATCCCTAAAGATACTAAGATCTTCGTAAATGTTTGGTCTATTCAGAGAGACCCCAATGT 1313
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1197 TATCCCTAAAGACACTAAGATCTTCGTCAATGTTTGGTCTATTCAGAGAGACCCAAATGT 1256
Query 1314 GTGGGAGAATCCAACTGAGTTTCGTCCTGAGAGGTTTCTTGATAATAACTCTTGTGATTT 1373
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1257 GTGGGAGAATCCAACTGAGTTTCGTCCTGAAAGGTTTCTTGATAACAACTCTTGTGATTT 1316
Query 1374 CACTGGAGCCAATTATAGCTATTTTCCATTTGGATCTGGCCGGAGAATTTGTGCCGGTGT 1433
|||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |
Sbjct 1317 CACTGGAGCCAATTATAGCTATTTTCCATTTGGATCGGGCAGGAGAATTTGCGCCGGTAT 1376
Query 1434 AGCACTCGCCGAGAGGATGGTTTTATACACTCTCGCGACACTATTGCATTCGTTCGATTG 1493
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1377 AGCACTAGCCGAGAGGATGGTTTTGTACACTCTCGCGACACTATTGCATTCGTTCGATTG 1436
Query 1494 GAAGATACCGGAAGGCCACGTGTTGGATTTGAAAGAGAAGTTTGGGATTGTCTTGAAGCT 1553
||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1437 GAAGATACCGGAAGGCCACATTTTGGATTTGAAAGAGAAGTTTGGTATTGTCTTGAAGCT 1496
Query 1554 CAAGATCCCTCTTGTTGCCTTGCCCATTCCGAGGTTTTCGGATTCGAATCTTTACCTATA 1613
||||| |||||| ||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1497 CAAGACCCCTCTCGTTGCCTTGCCCATTCCGAGGTTGTCCGATTCAAATCTTTACCTATA 1556
Query 1614 G 1614
|
Sbjct 1557 G 1557
> Ahg490036 jgi|Araly1|490036|fgenesh2_kg.6__3170__AT4G12310.1
Length=1728
Score = 1709 bits (925), Expect = 0.0
Identities = 1376/1590 (87%), Gaps = 45/1590 (3%)
Strand=Plus/Plus
Query 64 ATGTCTCCGATTTCAAATCTCTTTC-CCGACAACAC-AATCAATCT-CACTCCTTACGCA 120
||||||| ||||||||||||| ||| |||||||||| ||| | | | || |||||||||
Sbjct 1 ATGTCTCTGATTTCAAATCTC-TTCACCGACAACACAAAT-ATTGTCCA-ACCTTACGCA 57
Query 121 ATTGTCATTCTCACCACTGTCTTCTCGATTCT-ATGGTATATCTTTAAGCGCTCGCCGCA 179
||| || |||||| | || |||||||| |||| | |||| |||| || |||||||||||
Sbjct 58 ATTCTCGTTCTCATCGCTATCTTCTCGGTTCTGA-GGTACCTCTTCAAACGCTCGCCGCA 116
Query 180 ACCGTCC-CTACCGCCTGGACCACGAGGGCTGCCTATAGTCGGGAACC-TCCCGTTTCTT 237
||| || |||||||||||||| |||||||| ||||| ||||| |||| |||| ||||||
Sbjct 117 ACC-ACCTCTACCGCCTGGACCGCGAGGGCTACCTATTGTCGGAAACCTTCCC-TTTCTT 174
Query 238 GATCCGGACCTTCACACCTACTTCGCAAACCTCGCTCAAAGTCACGGTCCAATCTTTAAA 297
|| ||||||||||||||||||||| |||| |||||| ||||||| || |||||||| |||
Sbjct 175 GACCCGGACCTTCACACCTACTTCACAAAACTCGCTAAAAGTCATGGCCCAATCTTCAAA 234
Query 298 CTCAATCTTGGCTCAAAGCTAACCATCGTAGTCAACTCTCCATCGCTGGCTCGAGAGATC 357
||||||||||||||||| |||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 235 CTCAATCTTGGCTCAAAACTAACCGTCGTGGTCAACTCTCCATCGCTGGCTAGAGAGATC 294
Query 358 TTGAAAGATCAAGACATCAATTTCTCAAACCGA-GACGTCCCTCTCACTGG-CCGAGCCG 415
|| ||||||||||| |||||||||||||||| | |||||||||||||| || ||||||||
Sbjct 295 TTTAAAGATCAAGATATCAATTTCTCAAACC-ATGACGTCCCTCTCAC-GGCCCGAGCCG 352
Query 416 CTACCTATGGAGGTATAGACATCGTTTGGACACCATACGGTGCCGAATGGAGACA-GCTT 474
||||||||| ||| | ||| |||||||| |||||||||||||||||||||| | ||||
Sbjct 353 TTACCTATGGCGGTCTCGACCTCGTTTGGTTACCATACGGTGCCGAATGGAGA-ATGCTT 411
Query 475 AGAAAAATATGCGTCCTAAAACTCCTTAGCCGCAAAACTTTGGATTCTTTCTACGAGCTC 534
|||||| | ||||| || || || |||||||||| ||| ||||||||||||||||||||
Sbjct 412 AGAAAAGTTTGCGTTCTCAAGCTTCTTAGCCGCAGAACGTTGGATTCTTTCTACGAGCTT 471
Query 535 CGACGCAAAGAAGTCCGGGAAAGAACTAGATATTTGTACGAGCAAGGTCGAAAACAATCC 594
||||| |||||| ||||||||||||| |||||||||||| ||||||||| || ||||
Sbjct 472 CGACGTAAAGAAATCCGGGAAAGAACAAGATATTTGTACCAGCAAGGTC---AAGAATCA 528
Query 595 CCGGTTAAAGTCGGAGATCAATTGTTTTTGACGATGATGAATCTAACGATGAATATGTTA 654
||||| || || ||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 529 CCGGTGAATGTTGGAGAGCAGGCCTTTTTGACGATGATGAATCTAACAATGAATATGTTA 588
Query 655 TGGGGAGGGTCGGTGAAAGCAGAGGAGATGGAGAGTGTTGGAACAGAGTTTAAAGGAGTG 714
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 589 TGGGGAGGTTCGGTTAAAGCAGAGGAAATGGAGAGTGTTGGAACAGAGTTTAAAGGAGTG 648
Query 715 ATTTCTGAAATTA-CTAGGCTTTTGAGTGAGCCTAATGTTTCTGACTTTTTTCCT-TGGC 772
||||||||||| | ||||||||||| | ||||||||||||||||| |||||||| |||
Sbjct 649 ATTTCTGAAAT-AGCTAGGCTTTTGGGAGAGCCTAATGTTTCTGA-TTTTTTCCCATGGT 706
Query 773 TAGCGAGGTTCGATCTTCAAGGACTTGTGAAGAGGATGGGTGTGTGTGCCCGCGAGCTTG 832
||||||| ||||||||||||||||||||||||| |||| | ||| ||| || ||||| |
Sbjct 707 TAGCGAGATTCGATCTTCAAGGACTTGTGAAGAAGATGCATATGTATGCTCGAGAGCTCG 766
Query 833 ATGCGGTACTTGATCGAGCCATCGAGCAGATGAAACCGT-TAAGAGGAAGAGATG---AT 888
||||| |||||||||||||||||||||||||| | | | ||||| | || |||| ||
Sbjct 767 ATGCGATACTTGATCGAGCCATCGAGCAGATGCATC-GACTAAGAAGTAGGGATGGTGAT 825
Query 889 GATG---AA-GTTAAAGACTTCTTGCAATATTTGATGAAATTAAAGGATCAAGAAGGTGA 944
|||| || || |||||||| |||||| |||||||||| || ||||| ||||||| |||
Sbjct 826 GATGGTGAATGT-AAAGACTTTTTGCAACATTTGATGAAGTTCAAGGACCAAGAAGCTGA 884
Query 945 CTCGGAGGTTCCCATCACCATTAATCATGTCAAAGCCTTACTCACGGATATGGTGGTTGG 1004
|||||||||||||| || |||| |||||||||||| |||| ||||||||| |||||
Sbjct 885 GTCGGAGGTTCCCATTACGGTTAACCATGTCAAAGCCGTACTTGTGGATATGGTAGTTGG 944
Query 1005 TGGCACTGACACATCGACAAACACGATAGAGTTTGCGATGGCAGAGCTAATGAGCAACCC 1064
||| || || ||| | || ||||||||||||||||| |||||||| ||||| || |||||
Sbjct 945 TGGTACAGATACAACAACCAACACGATAGAGTTTGCAATGGCAGAACTAATAAGAAACCC 1004
Query 1065 GGAGCTGATCAAAAGAGCACAAGAAGAGCTAGATGAAGTTGTAGGCAAAGACAACATTGT 1124
|||| |||| || ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1005 GGAGTTGATGAAGAGAGCACAACAAGAGCTAGACGAAGTTGTAGGCAAAGACAACATTGT 1064
Query 1125 TGAAGAATCACACATCACTAGACTT-CCTTACATT-TTAGCCATTATGAAAGAAACACTT 1182
|||||||||||||||||||||| || |||| | || ||||||||||||||||||||||||
Sbjct 1065 TGAAGAATCACACATCACTAGA-TTGCCTTTC-TTATTAGCCATTATGAAAGAAACACTT 1122
Query 1183 AGGCTTCACCCAACC-CTTCCTTTGTTAGTCCCTCACCGTCCGGCTGAAAACAC-CGTGG 1240
|| ||| |||||| || ||| || ||||||||||||||||| | |||| | | | |||
Sbjct 1123 AGACTTTTTCCAACCACT-CCTCTGCTAGTCCCTCACCGTCCGTCCGAAACCGCAC-TGG 1180
Query 1241 TGGGCGGCTACACCATCCCTAAAGATACTAAGATCTTCGTAAATGTTTGGTCTATTCAGA 1300
| ||||||||||||||||||||| | ||||| |||||| | ||||||||| ||||||||
Sbjct 1181 TCGGCGGCTACACCATCCCTAAAAACACTAAAATCTTCATCAATGTTTGGGGTATTCAGA 1240
Query 1301 GAGACCCCAATGTGTGGGAGAATCCAACTGAGTTTCGTCCTGAGAGGTTTCTTGATAATA 1360
||||||| ||||||||||||||||| |||||||||| ||| ||||||||||||||||| |
Sbjct 1241 GAGACCCAAATGTGTGGGAGAATCCGACTGAGTTTCTTCCCGAGAGGTTTCTTGATAAGA 1300
Query 1361 ACTCTTGTGATTTCACTGGAGCCAATTATAGCTATT-TTCCATTTGGATCTGGCCGGAGA 1419
| |||||||||||||||||| | || |||||| || |||||||||| || |||||||||
Sbjct 1301 AGTCTTGTGATTTCACTGGAACTGATCATAGCT-TTCTTCCATTTGGGTCGGGCCGGAGA 1359
Query 1420 ATTTGTGCCGGTGTAGCACTCGCCGAGAGGATGGTTTTATACACTCTCGCGACACTATTG 1479
||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1360 ATTTGTGTTGGTGTAGCACTCGCCGAGAGGATGGTTTTGTATACTCTCGCGACGCTATTG 1419
Query 1480 CATTCGTTCGATTGGAAGATACCGGAAGGCCACGTGTTGGATTTGAAAGAGAAGTTTGGG 1539
||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||
Sbjct 1420 TATTCGTTCGATTGGAAGATTCCGGATGGACACGTGTTGGATTTGGAAGAGAAGTTTGGG 1479
Query 1540 ATTGTCTTGAAGCTCAAGATCCCTCTTGTTGCCTTGCCCATTCCGAGGTTTTCGGATTCG 1599
||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||||
Sbjct 1480 ATTGTCTTGAAGCTCAAGACCCCTCTTGTTGCCTTGCCCATTCCAAGGTTGTCCAATTCG 1539
Query 1600 AATCTTTACCTATAGGGGCAAAGATCGTTA 1629
|||||||| |||| |||||| ||| |||
Sbjct 1540 AATCTTTATTTATAAAGGCAAAAATCTTTA 1569
> Ahg895446 jgi|Araly1|895446|Al_scaffold_0006_3442
Length=267
Score = 93.5 bits (50), Expect = 5e-18
Identities = 143/186 (77%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 1392 CTATTTTCCATTTGGATCTGGCCGGAGAATTTGTGCCGGTGTAGC-ACTCGCCGAGAG-G 1449
|||||| ||||||||||||||||||||||||||||| || | || | | || ||||| |
Sbjct 51 CTATTTCCCATTTGGATCTGGCCGGAGAATTTGTGCGGGAATGGCCA-TGGCAGAGAGAG 109
Query 1450 ATGGTT-TTATACACTCTCGCGACACTATTGCATTCGTTCGATTGGAAGATACCGGAAGG 1508
||||| || |||| ||| || || || ||| |||| || |||||||| || ||||||
Sbjct 110 -TGGTTCTT-TACAATCTTGCAACGCTTTTGAATTCTTTTGATTGGAAAATTGGGGAAGG 167
Query 1509 CCACGT--GTTGGATTT-GAAAGAGAAGTTTGGGATTGTCTTGAAGCTCAAGA-TCCCTC 1564
| | || ||| | || ||||||||||||||||| |||||| | |||| ||| |
Sbjct 168 AGA-GAAAGT-GGAGCTCGAG-GAGAAGTTTGGGATTGTGTTGAAGTTGAAGAATCCA-C 223
Query 1565 TTGTTG 1570
||||||
Sbjct 224 TTGTTG 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5