BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12320.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490036 jgi|Araly1|490036|fgenesh2_kg.6__3170__AT4G12310.1 2296 0.0
Ahg327347 jgi|Araly1|327347|fgenesh1_pm.C_scaffold_6002567 1766 0.0
> Ahg490036 jgi|Araly1|490036|fgenesh2_kg.6__3170__AT4G12310.1
Length=1728
Score = 2296 bits (1243), Expect = 0.0
Identities = 1503/1629 (92%), Gaps = 15/1629 (1%)
Strand=Plus/Plus
Query 23 ATGTCTCCCATATCAAATCTCTTCGCTGGCAACAC-AATCAATCT-CACTCCTTACGCAA 80
||||||| || |||||||||||| | | |||||| ||| | | | || ||||||||||
Sbjct 1 ATGTCTCTGATTTCAAATCTCTTCACCGACAACACAAAT-ATTGTCCA-ACCTTACGCAA 58
Query 81 TTCTCATTCTCATTGCTATCTTCTCGATACT-ATGGTACCTCTTCAAACGCTCGCCGCAA 139
||||| ||||||| |||||||||||| | || | ||||||||||||||||||||||||||
Sbjct 59 TTCTCGTTCTCATCGCTATCTTCTCGGTTCTGA-GGTACCTCTTCAAACGCTCGCCGCAA 117
Query 140 CCGCATCTACCCCCTGGACCGCGAGGGCTACCTATTGTCGGAAACCTTCCCTTTCTTGAC 199
|| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CCACCTCTACCGCCTGGACCGCGAGGGCTACCTATTGTCGGAAACCTTCCCTTTCTTGAC 177
Query 200 CCGGACCTTCACACCTACTTCACAAAACTTGCTGAAAGTTATGGTCCAATCTTCAAACTC 259
||||||||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||
Sbjct 178 CCGGACCTTCACACCTACTTCACAAAACTCGCTAAAAGTCATGGCCCAATCTTCAAACTC 237
Query 260 AATCTTGGCTCAAAACTAACTGTCGTGGTCAACACTCCATCGCTGGCTCGAGAGATCTTG 319
|||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 238 AATCTTGGCTCAAAACTAACCGTCGTGGTCAACTCTCCATCGCTGGCTAGAGAGATCTTT 297
Query 320 AAAGATCAAGATATCAATTTCTCAAACCATGACGTCCCTCTCACAGCCCGAGCCGTTACC 379
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 AAAGATCAAGATATCAATTTCTCAAACCATGACGTCCCTCTCACGGCCCGAGCCGTTACC 357
Query 380 TATGGCGGTCTCGACCTTGTCTGGTTACCATACGGTGCTGAATGGAGGATGCTTAGGAAA 439
||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct 358 TATGGCGGTCTCGACCTCGTTTGGTTACCATACGGTGCCGAATGGAGAATGCTTAGAAAA 417
Query 440 GTTTGCGTTCTTAAGCTTCTTAGCCACAGAACGTTGAATTCTTTCTACGAGCTTCGACGT 499
||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 418 GTTTGCGTTCTCAAGCTTCTTAGCCGCAGAACGTTGGATTCTTTCTACGAGCTTCGACGT 477
Query 500 AAAGAAATCCGGGAAAGAACGAGATATTTGTACCAGAAAGGTCAAGAAGAATCACCGGTG 559
|||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 478 AAAGAAATCCGGGAAAGAACAAGATATTTGTACCAGCAAGGTCAAGAA---TCACCGGTG 534
Query 560 AATGTTGGAGAACAGGTCTTTTTGACGATGATGAATCTAACTATGAATATGTTATGGGGA 619
||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 535 AATGTTGGAGAGCAGGCCTTTTTGACGATGATGAATCTAACAATGAATATGTTATGGGGA 594
Query 620 GGTTCTGTGAAAGCAGAGGAAATGGAGAGTGTTGGAACAGAGTTTAAAGAAGTGATTTCT 679
||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 595 GGTTCGGTTAAAGCAGAGGAAATGGAGAGTGTTGGAACAGAGTTTAAAGGAGTGATTTCT 654
Query 680 GAAATTA-CTAGGCTTTTGGGAGAGCCTAATGTTTCTGACTTTTTCCCACGGTTAGCGAG 738
||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 655 GAAAT-AGCTAGGCTTTTGGGAGAGCCTAATGTTTCTGATTTTTTCCCATGGTTAGCGAG 713
Query 739 ATTCGATCTTCAAGGACTTGTGAAGAAGATGCATGTGTGTGCTCGGGAGCTCGATGCCAT 798
|||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||
Sbjct 714 ATTCGATCTTCAAGGACTTGTGAAGAAGATGCATATGTATGCTCGAGAGCTCGATGCGAT 773
Query 799 ACTTGATCGAGCCATCGAGCAGATGCAACTACTAAGAACTAGGGATGGTGATGATGGTGA 858
||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct 774 ACTTGATCGAGCCATCGAGCAGATGCATCGACTAAGAAGTAGGGATGGTGATGATGGTGA 833
Query 859 ATGTAAAGACTTTTTGCAACATTTGATGAAGTTAAAGGACCAAGAAGCTGACTCGGAGGT 918
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 834 ATGTAAAGACTTTTTGCAACATTTGATGAAGTTCAAGGACCAAGAAGCTGAGTCGGAGGT 893
Query 919 TCCCATTACGGTTAACCATGTCAAAGCCGTACTCGTGGATTTGGTGGTTGGTGGTACGGA 978
||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct 894 TCCCATTACGGTTAACCATGTCAAAGCCGTACTTGTGGATATGGTAGTTGGTGGTACAGA 953
Query 979 TACATCGACCAACACAATAGAGTTTGCAATGGCCGAACTAATAAGAAAGCCGGAGTTGAT 1038
|||| | |||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 954 TACAACAACCAACACGATAGAGTTTGCAATGGCAGAACTAATAAGAAACCCGGAGTTGAT 1013
Query 1039 GAAGAGAGCACAACAAGAGCTAGACGAAGTTGTAGGCAAAGATAACATTATTGAAGAATC 1098
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1014 GAAGAGAGCACAACAAGAGCTAGACGAAGTTGTAGGCAAAGACAACATTGTTGAAGAATC 1073
Query 1099 ACACATCACTAGATTGCCTTTCATATCAGCCATAATGAAAGAAACACTTAGACTTTATCC 1158
|||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||
Sbjct 1074 ACACATCACTAGATTGCCTTTCTTATTAGCCATTATGAAAGAAACACTTAGACTTTTTCC 1133
Query 1159 AACCATTCCCCTGCTAGTCCCTCACCGTCCGTCTGAAACCGCGCTGGTCGGCGGCTACAC 1218
||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1134 AACCACTCCTCTGCTAGTCCCTCACCGTCCGTCCGAAACCGCACTGGTCGGCGGCTACAC 1193
Query 1219 CATCCCAAAAAACACTAAGATCTTCATCAATGTTTGGTCTATCCAGAGAGACCCAAATGT 1278
|||||| ||||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 1194 CATCCCTAAAAACACTAAAATCTTCATCAATGTTTGGGGTATTCAGAGAGACCCAAATGT 1253
Query 1279 GTGGGAGTATCCGACTGAGTTTCGTCCCGAGAGGTTTCTTGATAAGAAGTCTTGTGATTT 1338
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1254 GTGGGAGAATCCGACTGAGTTTCTTCCCGAGAGGTTTCTTGATAAGAAGTCTTGTGATTT 1313
Query 1339 CACTGGAACTGATTATAGCTATCTTCCGTTTGGATCTGGCAGGAGAATTTGCGCAGGTAT 1398
||||||||||||| |||||| |||||| ||||| || ||| |||||||||| | ||| |
Sbjct 1314 CACTGGAACTGATCATAGCTTTCTTCCATTTGGGTCGGGCCGGAGAATTTGTGTTGGTGT 1373
Query 1399 AGCACTCGCCGAGAGGATGATTTTGTACACTCTCGCGACGCTATTGCATTCGTTTGATTG 1458
||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||
Sbjct 1374 AGCACTCGCCGAGAGGATGGTTTTGTATACTCTCGCGACGCTATTGTATTCGTTCGATTG 1433
Query 1459 GAAGATACCGGAAGGCCACATTTTGGATTTGAAAGAGAAGTTTGGGATTGTCTTGAAGCT 1518
|||||| ||||| || ||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 1434 GAAGATTCCGGATGGACACGTGTTGGATTTGGAAGAGAAGTTTGGGATTGTCTTGAAGCT 1493
Query 1519 CAAGTCCCCTCTTGTTGCCTTGCCCGTTCCGAGGTTGTCCAATTCGAATCTTTATTTATA 1578
|||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1494 CAAGACCCCTCTTGTTGCCTTGCCCATTCCAAGGTTGTCCAATTCGAATCTTTATTTATA 1553
Query 1579 AACGCTATACTCGTTAC--TTTTCCTTaaaaaaaggaaaaaGATTTTTATATTGAACATT 1636
|| || | | || ||| ||||| |||||||| ||||||||||| |||| ||| ||||
Sbjct 1554 AAGGCAAAAATCTTTATAGTTTTC-TTAAAAAA-GGAAAAAGATTGTTATGTTGGCCATT 1611
Query 1637 TTTATGATA 1645
|||||||||
Sbjct 1612 TTTATGATA 1620
> Ahg327347 jgi|Araly1|327347|fgenesh1_pm.C_scaffold_6002567
Length=1557
Score = 1766 bits (956), Expect = 0.0
Identities = 1362/1560 (87%), Gaps = 20/1560 (1%)
Strand=Plus/Plus
Query 23 ATGTCTCCCATATCAAATCTCTTCGCTGGCAACACAATCAATCTCACTCCTTACGCAATT 82
|||||||| || |||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCCGATTTCAAATCTCTTCCCCGACAACACAATCAATCTCACTCCTTACGCAATT 60
Query 83 CTCATTCTCATTGCTATCTTCTCGATACTATGGTACCTCTTCAAACGCTCGCCGCAACCG 142
|||| ||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 61 CTCAGTCTCACCGCTATCTTCTCGATTCTATGGTACATCTTCAAACGCTCGACGCAACCG 120
Query 143 CATCTACCCCCTGGACCGCGAGGGCTACCTATTGTCGGAAACCTTCCC-TTTCTTGACCC 201
| |||||| |||||||| |||| |||||||| ||||| |||| |||| |||||||||||
Sbjct 121 CCTCTACCGCCTGGACCAAGAGGACTACCTATCGTCGGGAACC-TCCCGTTTCTTGACCC 179
Query 202 GGACCTTCACACCTACTTCACAAAACTTGCTGAAAGTTATGGTCCAATCTTCAAACTCAA 261
||||||||||||||||||| |||| || ||| ||||| | ||||||||||| ||||||||
Sbjct 180 GGACCTTCACACCTACTTCGCAAACCTCGCTCAAAGTCACGGTCCAATCTTTAAACTCAA 239
Query 262 TCTTGGCTCAAAACTAACTGTCGTGGTCAACACTCCATCGCTGGCTCGAGAGATCTTGAA 321
|||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||
Sbjct 240 TCTTGGCTCAAAACTAACCATCGTGGTCAACTCTCCAACTCTGGCTCGAGAGATCTTGAA 299
Query 322 AGATCAAGATATCAATTTCTCAAACC-ATGACGTCCCTCTCACAGCCCGAGCCGTTACCT 380
||||||||| |||||||||||||||| | ||||| |||||||| | |||||||| |||||
Sbjct 300 AGATCAAGACATCAATTTCTCAAACCGA-GACGTACCTCTCACTGGCCGAGCCGCTACCT 358
Query 381 ATGGCGGTCTCGACCTTGTCTGGTTACCATACGGTGCTGAATGGAGGA-TGCTTAGGAAA 439
|||| ||| | ||| | || ||| |||||| || || ||||||| || ||||| |||
Sbjct 359 ATGGAGGTATAGACATCGTTTGGACACCATATGGCGCCGAATGGA-GACAACTTAGAAAA 417
Query 440 GTTTGCGTTCTTAAGCTTCTTAGCCACAGAACGTTGAATTCTTTCTACGAGCTTCGACGT 499
| ||||| || || || ||||||| || ||| ||| |||||||||||||||| |||||
Sbjct 418 ATATGCGTCCTCAAACTCCTTAGCCGCAAAACTTTGGATTCTTTCTACGAGCTCCGACGC 477
Query 500 AAAGAAATCCGGGAAAGAACGAGATATTTGTACCAGAAAGGTCAAGAAGAATCACCGGTG 559
|||||| |||||||||||||||||||| | ||| || |||||||| ||||||| |||||
Sbjct 478 AAAGAAGTCCGGGAAAGAACGAGATATCTATACGAGCAAGGTCAACAAGAATCCCCGGTT 537
Query 560 AATGTTGGAGAACAGGTCTTTTTGACGATGATGAATCTAACTATGAATATGTTATGGGGA 619
|| |||||||| || | ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 538 AAAGTTGGAGATCAATTGTTTCTGACGATGATGAATCTAACGATGAATATGTTATGGGGA 597
Query 620 GGTTCTGTGAAAGCAGAGGAAATGGAGAGTGTTGGAACAGAGTTTAAAGAAGTGATTTCT 679
|| || |||||||||||||| |||||||||||||||| ||||||||| | ||| || |||
Sbjct 598 GGGTCGGTGAAAGCAGAGGAGATGGAGAGTGTTGGAAAAGAGTTTAAGGGAGTTATCTCT 657
Query 680 GAAATT-ACTAGG-CTTTTGGGAGAGCCTAATGTTTCTGACTTTTTCCCACGGTTAGCGA 737
| | || ||| || |||||| | |||||||||||||| |||||||| || || ||||||
Sbjct 658 G-AGTTAACT-GGACTTTTGAGTGAGCCTAATGTTTCGGACTTTTTTCCGTGGCTAGCGA 715
Query 738 GATTCGATCTTCAAGGACTTGTGAAGAAGATGCATGTGTGTGCTCGG-GAGCTCGATGCC 796
|||| ||||||||||| |||||||||| ||||| ||||||||| ||| |||||||||||
Sbjct 716 GATTTGATCTTCAAGGGCTTGTGAAGAGGATGCGTGTGTGTGC-CGGAGAGCTCGATGCG 774
Query 797 ATACTTGATCGAGCCATCGAGCAGATGCAACTACTAAGAACTAGGGATGGTGATGATGGT 856
|||||||| ||||||| ||||||||| ||| ||||| || |||| ||||||||||
Sbjct 775 GTACTTGATAGAGCCATAGAGCAGATGAAACCGTTAAGAGGAAGAGATGATGATGATGGT 834
Query 857 GAATGTAAAGACTTTTTGCAACATTTGATGAAGTTAAAGGACCAAGAAGCTGACTCGGAG 916
||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 835 GAATGCAAAGACTTCTTGCAATATTTGATGAAGTTAAAGGACCAAGAAGGTGACTCGGAG 894
Query 917 GTTCCCATTACG-GTTAACCATGTCAAAGCCGTACTCGTGGATTTGGTGGTTGGTGGTAC 975
|||||||| | | |||| |||||||| ||||||||| |||| ||||||||||||| ||
Sbjct 895 GTTCCCATCA-GCATTAATCATGTCAAGGCCGTACTCACGGATATGGTGGTTGGTGGCAC 953
Query 976 GGATACATCGACCAACACAATAGAGTTTGCAATGGCCGAACTAATAAGAAAGCCGGAGTT 1035
|| |||||||| ||||| ||||||||||| |||||||| ||||| || || |||||| |
Sbjct 954 AGACACATCGACGAACACGATAGAGTTTGCGATGGCCGAGCTAATGAGCAACCCGGAGCT 1013
Query 1036 GATGAAGAGAGCACAACAAGAGCTAGACGAAGTTGTAGGCAAAGATAACATTATTGAAGA 1095
||| || |||||||||||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 1014 GATAAAAAGAGCACAACAAGAGCTAGACGAAGTTGCAGGCAAAGACAACATTGTTGAAGA 1073
Query 1096 ATCACACATCACTAGA-TTGCCTTTCATATCAGCCATAATGAAAGAAACACTTAGACTTT 1154
|||||||||||| ||| || |||| ||||| |||||| ||||||||||||||||| |||
Sbjct 1074 ATCACACATCACAAGACTT-CCTTACATATTAGCCATTATGAAAGAAACACTTAGGCTTC 1132
Query 1155 ATCCAACCATTCCCCTGCTAGTCCCTCACCGTCCGTCTGAAA-C-CGCGCTGGTCGGCGG 1212
| |||||| |||| || |||||||||| |||||| |||||| | | || |||| |||||
Sbjct 1133 ACCCAACCCTTCCTTTGTTAGTCCCTCATCGTCCGGCTGAAAGCAC-CG-TGGTGGGCGG 1190
Query 1213 CTACACCATCCCAAAAAACACTAAGATCTTCATCAATGTTTGGTCTATCCAGAGAGACCC 1272
|||||| ||||| ||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1191 CTACACTATCCCTAAAGACACTAAGATCTTCGTCAATGTTTGGTCTATTCAGAGAGACCC 1250
Query 1273 AAATGTGTGGGAGTATCCGACTGAGTTTCGTCCCGAGAGGTTTCTTGATAAGAAGTCTTG 1332
||||||||||||| |||| |||||||||||||| || |||||||||||||| || |||||
Sbjct 1251 AAATGTGTGGGAGAATCCAACTGAGTTTCGTCCTGAAAGGTTTCTTGATAACAACTCTTG 1310
Query 1333 TGATTTCACTGGAACTGATTATAGCTATCTTCCGTTTGGATCTGGCAGGAGAATTTGCGC 1392
||||||||||||| | ||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 1311 TGATTTCACTGGAGCCAATTATAGCTATTTTCCATTTGGATCGGGCAGGAGAATTTGCGC 1370
Query 1393 AGGTATAGCACTCGCCGAGAGGATGATTTTGTACACTCTCGCGACGCTATTGCATTCGTT 1452
||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1371 CGGTATAGCACTAGCCGAGAGGATGGTTTTGTACACTCTCGCGACACTATTGCATTCGTT 1430
Query 1453 TGATTGGAAGATACCGGAAGGCCACATTTTGGATTTGAAAGAGAAGTTTGGGATTGTCTT 1512
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1431 CGATTGGAAGATACCGGAAGGCCACATTTTGGATTTGAAAGAGAAGTTTGGTATTGTCTT 1490
Query 1513 GAAGCTCAAGTCCCCTCTTGTTGCCTTGCCCGTTCCGAGGTTGTCCAATTCGAATCTTTA 1572
|||||||||| ||||||| |||||||||||| |||||||||||||| |||| ||||||||
Sbjct 1491 GAAGCTCAAGACCCCTCTCGTTGCCTTGCCCATTCCGAGGTTGTCCGATTCAAATCTTTA 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5