BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12330.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943136 jgi|Araly1|943136|scaffold_603680.1 1629 0.0
Ahg333172 jgi|Araly1|333172|fgenesh1_pm.C_scaffold_90000001 636 0.0
Ahg494525 jgi|Araly1|494525|fgenesh2_kg.8__341__AT5G44620.1 483 3e-135
Ahg895446 jgi|Araly1|895446|Al_scaffold_0006_3442 329 4e-89
Ahg943132 jgi|Araly1|943132|scaffold_603676.1 235 8e-61
> Ahg943136 jgi|Araly1|943136|scaffold_603680.1
Length=1137
Score = 1629 bits (882), Expect = 0.0
Identities = 1057/1142 (93%), Gaps = 10/1142 (1%)
Strand=Plus/Plus
Query 61 TTTCTACATAAACAAGAACCAATGACAGATATTTTCACTTTCTTTACGATCCAAAATCGT 120
|||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 1 TTTCTAAATAAACAAGAAGCAATGACAGAAATTTTCACTTTCGTTACGATCCAAAATCGT 60
Query 121 AATGACCACTTCGACTTTGTTTTAGCTACAATAGTCATATCCTCTGTTTTTTGGTATATA 180
|||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATGGCCACTTCAACATTGTTTTAGCTACAATAGTCATATCCTCTGTTTTTTGGTATATA 120
Query 181 TGGGTTTACGTCAAATCGAAACGACTGTTTCCACCGTTACCACCGGGACCTCGGGGTCTT 240
||||||||| |||||| ||||| |||||||||||| |||| |||||||||||||||||
Sbjct 121 TGGGTTTACACCAAATCCAAACGGCTGTTTCCACCGATACCGCCGGGACCTCGGGGTCTA 180
Query 241 CCCATCGTCGGAAACCTCCCATTCCTCCACCCGGAGCTTCACACCTACTTTCACAGTCTA 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCCGTCGTCGGAAACCTCCCATTCCTCCACCCGGAGCTTCACACCTACTTTCACAGTCTA 240
Query 301 GCTCAAAAACACGGACCCGTTTTCAAACTATGGCTCGGCGCAAAACTAACCATCGTGATA 360
||||||||||||||||||||| |||||||||||||||| || |||||||||||||| |||
Sbjct 241 GCTCAAAAACACGGACCCGTTCTCAAACTATGGCTCGGGGCGAAACTAACCATCGTAATA 300
Query 361 ACCTCTTCCGAAGCAACGCGGGATATTCTAAGAACTAATGACGTCATCTTTGCGAACGAC 420
|||||||| ||||| || || || ||||||||||| ||||||||||||||||||||| ||
Sbjct 301 ACCTCTTCTGAAGCCACACGCGAGATTCTAAGAACCAATGACGTCATCTTTGCGAACCAC 360
Query 421 GACGTTCCCGTCGCAGGCTCACTCAGCACGTATGGTGGCGTAGACATTGTCTGGTCACCG 480
||||||||||||| ||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GACGTTCCCGTCGTAGGTTCGCTCAGCACGTACGGTGGCGTAGACATTGTCTGGTCACCG 420
Query 481 TACGGACCAGAATGGCCAATGCTAAGAAAAATCTGCATTAACAAAATGTTAAGCAACGCC 540
|||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 TACGGAACAGAATGGCGAATGCTGAGAAAAATCTGCATTAACAAAATGTTAAGCAACGCC 480
Query 541 ACGTTGGATTCAAATTCTTTTAGTGCACTTCGCCGCCAGGAGACCAGGCGAACAGTCCGG 600
|||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||
Sbjct 481 ACGTTGGATTCAAATTCTTTCAATTTACTTCGCCGCCAGGAGACCAAGCGAACAGTCCGA 540
Query 601 TATTTGGCAGACCGGGCTCGGGCCGGGT-TGGCGGTTAACGTTGGAGAACAAATATTTGT 659
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 541 TATTTGGCAGACCGGGCTCGGGCCGGGTCTGCCG-TTAACGTTGGAGAACAAATATTTGT 599
Query 660 CACGATATTAAATGTGGTGA-C--TCAGATGTTGTGGGGAGAAACTGTTGCGGACG-ACG 715
|||||||||||||||||||| | ||||||||||||||||| || |||||||| | | |
Sbjct 600 CACGATATTAAATGTGGTGATCACTCAGATGTTGTGGGGAGCTACGGTTGCGGATGGA-G 658
Query 716 AGGAGAGAGAGAAAGTTGGAGCTGAATTTTTGGAATTGATTACGGAAATAATTGATGTTG 775
|||||||||| | ||||||||||| || |||||| |||||||| | ||||||||||||
Sbjct 659 AGGAGAGAGATAGTGTTGGAGCTGAGTTCTTGGAACTGATTACG-A--TAATTGATGTTG 715
Query 776 TGGGAAAGCCAAATGTCTCTGATTTTTTCCCGGTTTTGAGCCGGTTTGACCTTCAGGGTT 835
| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 716 TCGGAAAGCCGAATGTCTCTGATTTTTTTCCGGTTTTGAGCCGGTTTGATCTTCAGGGTT 775
Query 836 TGGCTAAGCGTGTGCGTAGATCGGCTCAGAGGATGGACCGGATGTTCGACCGGATTATAA 895
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 776 TGGCTAAGCGTGTGCGTGGATCGGCTCAGAGGATGGACCAGATGTTCGACCGGATTATAA 835
Query 896 GTCAACGGATGGGAATGGATAAGGGAAGTAAAGGGAACGGTGGAGATTTTTTGATGGTTT 955
||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 836 ATCAACGGGTTAGAATGGATAAGGGAAGTAAAGGGAACGGCGTAGATTTTTTGATGGTTT 895
Query 956 TGTTGAATGCTAAGGATGAAGATGAAAACATGTCCATGAACCATGTCAAGGCCTTGCTAA 1015
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 896 TGTTGAATGCTAAGGAAGAAGATGAAAACATGTCCATGAACCATGTCAAGGCCTTCCTTA 955
Query 1016 TGGATATGGTGCTTGGTGGTACAGACACATCTTTGAACACAATAGAGTTCGCAATGGCAG 1075
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGGACATGGTGCTTGGTGGTACAGACACATCTTTGAACACAATAGAGTTCGCAATGGCAG 1015
Query 1076 AGCTTATAAACAAACTGGAGATCATGAAGAGAGCTCAACAAGAGCTTGACAAGGTTGTGG 1135
||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 1016 AGCTTATAAACAAACCGGAGATCATGAAGAAAGCTCAACAAGAGCTCGACAAAGTTGTGG 1075
Query 1136 GGAAAAACAACATCGTCGAAGAAAAACATATCACTAAACTTCCATACATTCTCTCCATTA 1195
| ||||| |||||||| ||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1076 GTAAAAATAACATCGTAGAAGAAACACATATCACTTAACTTCCATACATTCTCTCCATTA 1135
Query 1196 TG 1197
||
Sbjct 1136 TG 1137
> Ahg333172 jgi|Araly1|333172|fgenesh1_pm.C_scaffold_90000001
Length=1290
Score = 636 bits (344), Expect = 0.0
Identities = 863/1106 (78%), Gaps = 66/1106 (6%)
Strand=Plus/Plus
Query 567 ACTTCGCCGCCAGGAGAC-CAGGCGAACAGTCCGGTATTTGGCAGACCGGGCTCGGGCCG 625
||| || || || ||||| | ||| ||| |||||||||||||| |||| |||||||| |
Sbjct 213 ACTCCGTCGACAAGAGACTC-GGCAAACCGTCCGGTATTTGGCGGACCAGGCTCGGGTC- 270
Query 626 GGTT-GGCGGTTAACGTTGGAGAACAAATATT-TGTCACGATATTAAATGTGGTGACTCA 683
|||| | |||||||| | |||||||||||||| | | | ||| || ||||| | || ||
Sbjct 271 GGTTCGCCGGTTAACCTGGGAGAACAAATATTCT-TGATGATGTTGAATGTTATTACGCA 329
Query 684 GATGTTGTGGGGAGA-AACTGTTGCGGACGACGAGGAGAGAGA-GAAAGTTGGAGCTGAA 741
|||| | ||||| | ||| ||| ||| | || ||||| || | ||||| || ||
Sbjct 330 GATGCTATGGGG-CACAACGGTTAAGGA--A-GAAGAGAGGGATG-TTGTTGGGGCCGAG 384
Query 742 TTTTTGGAATTGATTACG-GAAAT-AATTGATGTTGTGGGAAAGCCAAATGTCTCTGA-T 798
|| || || |||||| | || || || || | || | ||| ||| |||| || |
Sbjct 385 TTCTTAGAGGTGATTA-GAGAGATGAA-CGACCTCCTGCTAGTGCCCAATATCTCCGACT 442
Query 799 TTTTTCCCGGTTTTGAGCCGGTTTGACCTTCAGGGTTTGGCTAAGCGTGTGCGTAGATCG 858
||||| |||||||||||||||||||| ||||||||||||| ||||||| ||| ||| ||
Sbjct 443 TTTTT-CCGGTTTTGAGCCGGTTTGATCTTCAGGGTTTGGTTAAGCGTATGCAAAGACCG 501
Query 859 GCTCAGAGGATGGACCGGATGTTCGACCGGATTAT-AAGTCAACGGAT-GGGAATGGATA 916
||||| |||||||| | |||||| |||||||| || || |||||| | ||||| ||||
Sbjct 502 GCTCAAAGGATGGATCAGATGTTTGACCGGATCATCAA-CCAACGGCTGGGGAA-GGAT- 558
Query 917 AGGGA-AGTA---AAGGGA-ACGGTGGAGATTTT-TTGATGGTTTTGTTGAATGCTAAGG 970
||||| |||| | |||| | | ||| |||||| ||||| || |||||||| | |||||
Sbjct 559 AGGGACAGTAGTGATGGGAGA-GCTGGGGATTTTCTTGAT-GTCTTGTTGAAAGTTAAGG 616
Query 971 ATGAAG---ATG-AAA-AC--A--TGTCCATGAACCATGTCAAGGCCTTGCTAATGGATA 1021
|||||| ||| ||| || | || |||||||| ||||||||||| |||| ||||| |
Sbjct 617 ATGAAGAAAATGAAAAGACGAATTTGACCATGAACGATGTCAAGGCCGTGCTCATGGACA 676
Query 1022 TGGTGCTTGGTGGTACAGACACATCTTTGAACACAATAGAGTTCGCAATGGCAGAGCTTA 1081
||||||| ||||||||||||||||| || || ||||| ||||| ||||| ||| |||
Sbjct 677 TGGTGCTCGGTGGTACAGACACATCACTGCACGTTATAGAATTCGCGATGGCCGAG-TTA 735
Query 1082 -TAAACAAACTGGAGATCATGAAGAGAGCTCAACAAGAGCTTGACAAGGTTGTGGGGAAA 1140
|| |||| | ||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 736 TTACACAACCCGGATATCATGAAGAGAGCTCAACAAGAGCTTGACAAAGTTGTGGGCAAA 795
Query 1141 -AACAACATCGTCGAAGAAAAACATATCACTAAACTTCCATACATTCTCT-CCATTATGA 1198
|| || | || || ||| || ||| ||||||||||||||||||| | |||||||||
Sbjct 796 GAAAAAGTT-GTGGACGAATCTCACATCTCTAAACTTCCATACATTCT-TGCCATTATGA 853
Query 1199 AAGAAACCCTAAGGCTTCACCCAGCTC-TTCCTCTTCTAATACCTCGCTGCCCATCTGAA 1257
||||||| |||||||||||| | | | |||| || || | |||||| | || || ||
Sbjct 854 AAGAAACTCTAAGGCTTCACAC-GATTATTCCACTCCTTGTTCCTCGCCGACCGTCAAAA 912
Query 1258 ACCACGGTTATAGGTGGCTACACAATTCCTAATGATTCTAAGGTTTTCATCAATGTGTGG 1317
||||| || | || |||| ||| || ||||| ||||| ||| |||||||||||||||||
Sbjct 913 ACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATCAATGTGTGG 972
Query 1318 GCGATTCATAGAAATCCGAACGTATGGGAGAATCCGTTGGAGTTTAATCCTGATAGGTTT 1377
||||| ||||| || || || |||||||||||||| | ||||| |||| || ||||||
Sbjct 973 GCGATCCATAGGAACCCCAATGTATGGGAGAATCCACTAAAGTTTGATCCCGACAGGTTT 1032
Query 1378 CTTGATAAAGGTTACGACTTTA-GTGGTAATGACTAT-AGTTATTTCCCGTTTGGATCTG 1435
|||||||| ||| ||||| | | || ||||||| | | ||||| ||||||||| |
Sbjct 1033 CTTGATAATTCTTATGACTTCAAG-GGAAATGACT-TCAACTATTTACCGTTTGGAA-T- 1088
Query 1436 GCCGGAGAATTTGTGCGGGAATGGCCATGGCCGAGAAAGTTGTTCTTTACAATCTTGCAA 1495
| | |||| || ||||||||||| ||||| || |||||||||||||| || |
Sbjct 1089 -----A---TGTGTG-GG-AATGGCCATGGGCGAGAGGGTAGTTCTTTACAATCTCGCTA 1138
Query 1496 CGCTTTTGCATTCTTTTGATTGGAGAATTGGGGAAGGAGAGAAAGTGGAGCTCGAGGAGA 1555
|| ||||||||||||||||||||| |||| ||||||||| ||||||| | |||||||
Sbjct 1139 CGTTTTTGCATTCTTTTGATTGGAAAATTCCACAAGGAGAGAGAGTGGAGGTGGAGGAGA 1198
Query 1556 AGTTTGGGATTTTATTGAAGTTGAAGAATCCACTTGTTGCAACACCCGTGCTAAGATTGT 1615
|||||||||| | ||| || | ||||||||||||||||| | ||||| ||||| ||||
Sbjct 1199 AGTTTGGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCGCGCCCGTACTAAGGTTGT 1258
Query 1616 CGGATCCAAACCTTTTTCTTTAACAG 1641
| |||||||| |||| |||||| |||
Sbjct 1259 CCGATCCAAATCTTTATCTTTA-CAG 1283
> Ahg494525 jgi|Araly1|494525|fgenesh2_kg.8__341__AT5G44620.1
Length=1436
Score = 483 bits (261), Expect = 3e-135
Identities = 821/1080 (76%), Gaps = 83/1080 (8%)
Strand=Plus/Plus
Query 591 AACAGTCCGGTATTTGGCAGACCGGGCTCGGGCCGGGTT-GGCGGTTAACGTT-GGAGAA 648
||| |||||||||||||| | || |||||||| | |||| |||||||| || ||||||
Sbjct 342 AACCGTCCGGTATTTGGCGGGCCAGGCTCGGGTC-GGTTCACCGGTTAAC-TTGGGAGAA 399
Query 649 CAAATATT-TGTCACGATATTAAATGTGGTGACTCAGATGTTGTGGGG-AGAAACTGTTG 706
|||||||| | | | ||| || ||||| ||||| |||||| | ||||| || || | |
Sbjct 400 CAAATATTCT-TGATGATGTTGAATGTTGTGACGCAGATGCTATGGGGCAG-GAC-GGT- 455
Query 707 CGGACGACGAGGAGAGAGAGAAAGTTGGAGCTGAATTTTTGGAATTGATTACG-GAAAT- 764
| | | | | ||||| |||| || | ||| || || || || |||||| | || ||
Sbjct 456 C-AAAGGCAAAGAGAGGGAGAGTGTCGTAGCCGAGTTCTTAGAGGTGATTA-GAGAGATG 513
Query 765 AATTGATGTTGTGGGAAAGCCAAATGTCTCTGA-TTTTTTCCCGGTTTTGAGCCGGTTTG 823
|| || | || | ||| ||| | || || |||||| |||| |||||||| ||||
Sbjct 514 AA-CGACCTCCTGCTAGTGCCCAATATATCCGACTTTTTT-CCGGCATTGAGCCGATTTG 571
Query 824 ACCTTCAGGGTTTGGCTAAGCGTGTGCGTA-GATCGGCTCAGAGGATGGACCGGATGTTC 882
| || || ||||||| ||||||| |||| | || | |||||||||||||||| ||||||
Sbjct 572 ATCTACAAGGTTTGGTTAAGCGTATGCG-AGGACCAGCTCAGAGGATGGACCAGATGTTT 630
Query 883 GACCGGATTA-TAAGTCAACGGATGGGAATGGATAAGGGAAGTAAAGGGAACGGTGGAGA 941
|||||||||| ||| |||||| |||| |||||| | || | |||| | || |||| |
Sbjct 631 GACCGGATTATTAA-CCAACGGTTGGGGATGGAT-A-GG--G-AAAGTG-AC--TGGA-A 680
Query 942 TTTTTTGATGGTTTTGTTGAATG-CTAAGGATGAAGATGAAAACATGTCCATGAACCATG 1000
||| | |||| || ||| || | |||| || |||| || |||||||| |||
Sbjct 681 --AACTGAAGATTTT-CTGGATGCCT--TGTTGAAAAT-AAAA-TTGACCATGAACGATG 733
Query 1001 TCAAGGCCT-TGCTAATGGATATGGTGCTTGGTGGTACAGACACATCTTTGAACACA--A 1057
|||||| || |||| |||| |||||||| ||||||||||||||||| | ||||| |
Sbjct 734 TCAAGG-CTCTGCTCGTGGACATGGTGCTCGGTGGTACAGACACATCACT--ACACATCA 790
Query 1058 TAGAGTTCGCAATGGCAGAGCTTA-TAAACAAACTGGAGATCATGAAGAGAGCTCAACAA 1116
|||| ||||| ||| | |||| || || |||| | ||| |||||||||||||||||||||
Sbjct 791 TAGAATTCGCGATGCCCGAGC-TATTACACAACCCGGATATCATGAAGAGAGCTCAACAA 849
Query 1117 GAGCTTGACAAGGTTGTGGGGAAA-AACAACATCGTCGAAGAAAAACATATCACTAAACT 1175
||||||||||| |||||||| ||| || || | || || ||| || ||| |||||||
Sbjct 850 GAGCTTGACAAAGTTGTGGGCAAAGAA-AAGGTTGTGGACGAATCTCACATCTCTAAACT 908
Query 1176 TCCATACATTCTCT-CCATTATGAAAGAAACCCTAAGGCTTCACCCAGCTC-TTCCTCTT 1233
|||||||||||| | |||||||||||||||| | |||||||||| | | | |||| ||
Sbjct 909 TCCATACATTCT-TGCCATTATGAAAGAAACTCAAAGGCTTCACAC-GATTGTTCCACTC 966
Query 1234 CTAATACCTCGCTGCCCATCTGAAACCACGGTTATAGGTGGCTACACAATTCCTAATGAT 1293
|| | |||||| | || || ||||||| || | || |||| ||| || ||||| |||
Sbjct 967 CTTGTTCCTCGCCGACCGTCAAAAACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGAT 1026
Query 1294 TCTAAGGTTTTCATCAATGTGTGGGCGATTCATAGAAATCCGAACGTATGGGAGAATCCG 1353
|| ||| |||||||||||||||||||||| ||||| || || || ||||||||||||||
Sbjct 1027 TCAAAGATTTTCATCAATGTGTGGGCGATCCATAGGAACCCCAATGTATGGGAGAATCCA 1086
Query 1354 TTGGAGTTTAATCCTGATAGGTTTCTTGATAAAGG-TTACGACTTTA-GTGGTAATGACT 1411
| ||||| |||| || |||||||||||||| | ||| ||||| | | || |||||||
Sbjct 1087 CTAAAGTTTGATCCCGACAGGTTTCTTGATAA-GTCTTATGACTTCAAG-GGAAATGACT 1144
Query 1412 AT-AGTTATTTCCCGTTTGGATCTGGCCGGAGAATTTGTGCGGGAATGGCCATGGCCGAG 1470
| | ||||| |||||||| ||||| || ||||| |||| ||| |
Sbjct 1145 -TCAACTATTTACCGTTTGGGTCTGGTCGTAGAATATGTG------TGG---T------- 1187
Query 1471 AAAGTTGTTCTTTACAATCTTGCAACGCTT-TTGCATTCTTTTGATTGGAGAATTGGGGA 1529
| |||||||||||||| || ||| || ||||||||||||||||||| |||| |
Sbjct 1188 ----T-GTTCTTTACAATCTCGCTACG-TTATTGCATTCTTTTGATTGGAAAATTCCACA 1241
Query 1530 AGGAGAGAAAGTGGAGCTCGAGGAGAAGTTTGGGATTTTATTGAAGTTGAAGAATCCACT 1589
|||||||| ||||||| | ||||||||||||||||| | ||| || | |||||||||||
Sbjct 1242 AGGAGAGAGAGTGGAGGTGGAGGAGAAGTTTGGGATCGTGTTGGAGCTAAAGAATCCACT 1301
Query 1590 TGTTGCAACACCCGTGCTAAGATTGTCGGATCCAAACCTTTTTCTTTAACAGTTT-AAGT 1648
|||||| || ||| | ||||| ||||| |||||||| |||| |||||| ||||| ||||
Sbjct 1302 TGTTGCCACGCCCTTACTAAGGTTGTCCGATCCAAATCTTTATCTTTAG-AGTTTCAAGT 1360
> Ahg895446 jgi|Araly1|895446|Al_scaffold_0006_3442
Length=267
Score = 329 bits (178), Expect = 4e-89
Identities = 202/214 (94%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 1417 TATTTCCCGTTTGGATCTGGCCGGAGAATTTGTGCGGGAATGGCCATGGCCGAGAAAGTT 1476
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 52 TATTTCCCATTTGGATCTGGCCGGAGAATTTGTGCGGGAATGGCCATGGCAGAGAGAGTG 111
Query 1477 GTTCTTTACAATCTTGCAACGCTTTTGCATTCTTTTGATTGGAGAATTGGGGAAGGAGAG 1536
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 112 GTTCTTTACAATCTTGCAACGCTTTTGAATTCTTTTGATTGGAAAATTGGGGAAGGAGAG 171
Query 1537 AAAGTGGAGCTCGAGGAGAAGTTTGGGATTTTATTGAAGTTGAAGAATCCACTTGTTGCA 1596
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 172 AAAGTGGAGCTCGAGGAGAAGTTTGGGATTGTGTTGAAGTTGAAGAATCCACTTGTTGAA 231
Query 1597 ACACCCGTGCTAAGATTGTCGGATCCAAACCTTT 1630
|||||||||||||| || ||||||||||| ||||
Sbjct 232 ACACCCGTGCTAAGGTTCTCGGATCCAAATCTTT 265
> Ahg943132 jgi|Araly1|943132|scaffold_603676.1
Length=319
Score = 235 bits (127), Expect = 8e-61
Identities = 157/171 (92%), Gaps = 3/171 (2%)
Strand=Plus/Plus
Query 1321 ATTCATAGAAATCCGAACGTATGGGAGAATCCGTTGGAGTTTAATCCTGATAGGTTTCTT 1380
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||
Sbjct 147 ATTCATAGAAATCCGAATGTATGGGAGAATTTATTGGAGTTTAATCCGGATAGGTTTCTT 206
Query 1381 GATAAAGGTTACGACTTTAGTGGTAATGACTATAGTTATTTCCCGTTTGGATCTGGCCGG 1440
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GATAAAAGTTGTGACTTTAGTGGTAATGACTATAGTTATTTCCCGTTTGGATCTGGCCGG 266
Query 1441 AGAATTTGTGCGGGAATGGCCATGGCCGAGA-AAGTTGTTCTTTACAATCT 1490
||||||||| ||||| |||||||||| || | || ||||||||||||||||
Sbjct 267 AGAATTTGTACGGGA-TGGCCATGGCAGATATAA-TTGTTCTTTACAATCT 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5