BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12340.1
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490039 jgi|Araly1|490039|fgenesh2_kg.6__3173__AT4G12340.1 1022 0.0
> Ahg490039 jgi|Araly1|490039|fgenesh2_kg.6__3173__AT4G12340.1
Length=790
Score = 1022 bits (553), Expect = 0.0
Identities = 673/729 (92%), Gaps = 16/729 (2%)
Strand=Plus/Plus
Query 106 ATGGGAGATTTCTCGATTCAGATCAGTTCTAAGCTGATCAATCAGCTAGCTGAAGGTAAC 165
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 67 ATGGGCGATTTCTCGATTCAGATCAGTAATAAGCTGATCAATCAGCTAGCTGAAGGTAAC 126
Query 166 GATCAACCAAAGAGGAGGGCAAAGAAAACCAAACCTAAAGTCTCACCACAGAGCAAA-CA 224
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 127 GAACAACCGAAGAGGAGGGCAAAGAAAACCAAACCCAAAGTCTCACCACAGAGCAAAGCA 186
Query 225 GA--AAAC-AAACCAAG-ATGAA-G-AGAAGAAACCTAATCCAGTGGCTGAATTACCGAT 278
|| || | ||| || | | || | || |||||||||||||||||||||||||||||||
Sbjct 187 GATCAAGCGAAAACACGCCTAAATGCAG-AGAAACCTAATCCAGTGGCTGAATTACCGAT 245
Query 279 GCAGCCACCGTTTTTCTTCCCAATACCACCACAAGGAGCAGCAAGCACAGAGCTGGAATC 338
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 246 GCAGCCACCGTTTTTCTTCCCGATACCACCACAAGCAGCGGCAAGCACAGAGCTGGAATC 305
Query 339 GATAAAATCCGTTGTGAAAGAGAGTGAGAAGGTTCTTGAGAAGCTGGAGTTACAAGAGAA 398
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 306 GATAAAATCCGTTGTGAAAGAGAGTGAGAAAGTTCTTGAGAAGCTGGAGTTACAAGAGAA 365
Query 399 GAACATTGTTCGTGAAGTTACGGAGAGAGCCAAGGATCTGAGGGAGAAAGAGTTTAAGAT 458
||||||||||| |||||| || ||||||||||||||||| |||||||||||||| |||||
Sbjct 366 GAACATTGTTCATGAAGTGACAGAGAGAGCCAAGGATCTAAGGGAGAAAGAGTTCAAGAT 425
Query 459 CCCGGAACCTAAACCAATGCCTTGTTCGTCAGATCACGAAGCCTGGATGAAATGCTACAA 518
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 426 CCCGGAACCTAAACCAATGCCTTGTTCGTCATATCACGAAGCGTGGATGAAATGCTACAA 485
Query 519 GGAGAACATCGGTAG-TCCGTTGAAATGTAGCGGTTTCGTTAAGAGTTTCCAGGATTGTG 577
||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |
Sbjct 486 GGAGAACATCGGT-GACCCACTGAAATGTAGCGGTTTCGTTAAGAGTTTCCAGGATTGCG 544
Query 578 CACGCCGGTCCAGACAGCAAGTGAATCCTGAAGAAAAGTAGAGATAATAAGATTCAAAAG 637
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 545 CACGCCGGTCCAGACAGCAAGTGAATCCTGAAGAAAAGTAGAGATAATAAGATTTAAAAA 604
Query 638 GACTTTTTTGAGACACGAAGGGAA---TAGTTTTTGCTTTCTGAGATCATATGAATGACA 694
|||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 605 GACTTTTT-GAGACACGAAGGGAAGAGTAGTTTTTGCTTTCTGAGATCATATGAGTGATA 663
Query 695 CAGAAGAATTGTGCTTGTTTCCTTTTGATTTCATGAAAGCaaaaaagaaagaaaaaaaaT 754
||||||||||| | ||||||||| || ||| ||||||||| |||||||||||||||| |
Sbjct 664 CAGAAGAATTGAGATTGTTTCCTCTTAATTACATGAAAGCCAAAAAGAAAGAAAAAA--T 721
Query 755 AAGCAGAATCTGTGATTATGTTCATGAGATAAAACTTTCAAAACTATGTTCTTGATTAAC 814
||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||||||
Sbjct 722 AAGCAGAATCTGTGATTATATTCATGAGTTCAAACTTTCAAAACTGTGTTCTTGATTAAC 781
Query 815 TATTTTGGC 823
|||||||||
Sbjct 782 TATTTTGGC 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30765194019
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5