BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12350.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327351 jgi|Araly1|327351|fgenesh1_pm.C_scaffold_6002571 1214 0.0
Ahg492601 jgi|Araly1|492601|fgenesh2_kg.7__2034__AT4G22680.1 411 6e-114
> Ahg327351 jgi|Araly1|327351|fgenesh1_pm.C_scaffold_6002571
Length=867
Score = 1214 bits (657), Expect = 0.0
Identities = 805/874 (92%), Gaps = 20/874 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGGCAGCCATGTTGTGACAAGCTCATGGTGAAGAAGGGGCCGTGGACGGCGGAG 60
||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGGCAGCCTTGTTGTGACAAGCTCCTGGTGAAGAAGGGGCCGTGGACGGCGGAA 60
Query 61 GAAGACAAGAAACTGATAAACTTTATCTTGACCAACGGCCACTGTTGCTGGAGGGCTTTG 120
|||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||
Sbjct 61 GAAGACAAGAAACTGATAAACTTTATATTGAGCAACGGCCATTGTTGCTGGAGGGCTTTG 120
Query 121 CCGAAGCTGGCCGGTCTCCGTCGCTGTGGGAAGAGCTGCCGTCTACGGTGGACCAATTAT 180
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CCGAAGTTGGCCGGTCTCCGTCGCTGCGGGAAGAGCTGCCGTCTACGGTGGACCAATTAT 180
Query 181 CTCCGACCTGACTTGAAGAGAGGTCTTCTCTCCGACGCCGAGGAACAGCTTGTCATCGAC 240
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CTCCGACCTGACTTGAAAAGAGGTCTTCTCTCCGATGCCGAGGAACAGCTTGTCATCGAC 240
Query 241 CTTCATGCTCTTCTCGGCAACAGATGGTCCAAGATCGCTGCAAGATTACCAGGAAGAACA 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCATGCTCTTCTCGGAAACAGATGGTCCAAGATCGCTGCAAGATTACCAGGAAGAACT 300
Query 301 GACAACGAAATAAAAAATCATTGGAATACTCATATCAAGAAGAAGCTCCTTAAGATGGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACAACGAAATAAAAAATCATTGGAATACTCATATCAAGAAGAAGCTCCTTAAGATGGAA 360
Query 361 ATCGATCCTTCGACCCATCAACCTTTAAACAAAGTATTTACCGATACAAACTTAGTCGAT 420
||||||||||| ||||||||||||||||||||||||| |||||| | ||| || ||||||
Sbjct 361 ATCGATCCTTCAACCCATCAACCTTTAAACAAAGTATCTACCGACAAAAAGTTTGTCGAT 420
Query 421 AAATCTGAAACTTCATCGAAAGCCG-ACAATGTAAAT-GA--T-A-A-TAAAATCGTAGA 473
| || | || ||||||||||||||| | |||||||| || | | | ||||| | |||
Sbjct 421 AGAT-T-AA-CTTCATCGAAAGCCGGA-AATGTAAAGAGAAGTGATAGTAAAAGCAAAGA 476
Query 474 GATCGATGGGACAACGACAAATACAATAGATGA---TAGCATTATCACTCATCAAAATAG 530
||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 477 GATCGATGGGACAACGACAAATACAATAGATGAAACTAGCACGATCACTCATAAAAATAG 536
Query 531 TTCAAATGATGATTATGAATTACTTGGTGATATAATTCATAATTATGGAGATTTATTTAA 590
|||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||
Sbjct 537 TTCAAAAGATGATTATGAATTACTTGGTGATATTATTCATAACTATGAAGATTTATTTAA 596
Query 591 TATTCTATGGACCAACGATGAACCTCCTCTAGTCGATGATGCATCATGGAGCAATCATAA 650
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 597 TATTCTATGGACCAACGATGAACCTCCTCTAGTCGATGATGCATCATGGAGTAATAATAA 656
Query 651 CGTTGGTATTGGAGGAACAGCTGCAGT-TGCAGCCTCAGACAAGAACAACACTGCTGCCG 709
||| |||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 657 CGTCGGTATTGGTGGAACAGCTGCAGTCT-CAGCCTCAGACAAGAACAACATTGCTGCCG 715
Query 710 AG-GAAGATTTCCCGGAA-AGATCATTTGAAAAACAGAACGGCGAAAGTTGGATGTTCTT 767
| ||||| ||||||| | || ||||| ||| ||||||||||||||||||||||||| ||
Sbjct 716 -GTGAAGACTTCCCGGCACAG-TCATTAGAAGAACAGAACGGCGAAAGTTGGATGTTTTT 773
Query 768 GGATTATTGCCAAGAATTTGGTGTTGAAGATTTTGGGTTCGAGTGTTACCATGGTTTTGG 827
| ||||||||||||| ||| ||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 774 GAATTATTGCCAAGACTTTTGTGTTCAAGATTTTGGGCTCGAGTGTTACAATGGTTTTGG 833
Query 828 TCAAAGCTCCATGAAGACGGGTCACAAGGACTAG 861
||||||||||||| |||| |||||||||||||||
Sbjct 834 TCAAAGCTCCATGGAGACAGGTCACAAGGACTAG 867
> Ahg492601 jgi|Araly1|492601|fgenesh2_kg.7__2034__AT4G22680.1
Length=1258
Score = 411 bits (222), Expect = 6e-114
Identities = 335/389 (86%), Gaps = 10/389 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAGGCAGCCATGTTGTGACAAGCTCA-TGGTGAAGAAGGGGCCGTGGACGGCGGA 59
||||| ||||||||||| ||||||||||| | ||||||||| |||||||||||||||||
Sbjct 125 ATGGGGAGGCAGCCATGCTGTGACAAGCT-AGGGGTGAAGAAAGGGCCGTGGACGGCGGA 183
Query 60 GGAAGACAAGAAACTGATAAACTTTAT-CTTGACCAACGGCCACTGTTGCTGGAGGGCTT 118
|||||||||||| || |||||||| || || ||||||||||| ||||||||| | ||||
Sbjct 184 GGAAGACAAGAAGCTCATAAACTTCATACTC-ACCAACGGCCATTGTTGCTGGCGTGCTT 242
Query 119 TGCCGAAGCTGGCCGGTCTCCGTCGCTGTGGGAAGAGCTGCCGTCTACGGTGGACCAATT 178
|||||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |
Sbjct 243 TGCCGAAGCTGGCCGGTCTCCGCCGTTGTGGAAAGAGCTGCCGCCTCCGGTGGACTAACT 302
Query 179 ATCTCCGACCTGACTTGAAGAGAGGTCTTCTCTC-CGACGCCGAGGAACAGCTTGTCATC 237
||||||| ||||||||||||||||| ||||| || | | | || ||||| ||||| ||
Sbjct 303 ATCTCCGGCCTGACTTGAAGAGAGGCCTTCTTTCTC-ATGATGAAGAACAACTTGTAATT 361
Query 238 GACCTTCATGCTCTTCTCGGCAACA-GATGGTCCAAGATCGCTGCAAGATTACCAGGAAG 296
|| |||||||| | |||||| || | | ||||| ||||| ||| |||||||||| |||||
Sbjct 362 GATCTTCATGCGCATCTCGGAAATAAG-TGGTCTAAGATAGCTTCAAGATTACCTGGAAG 420
Query 297 AACAGACAACGAAATAAAAAATCATTGGAATACTCATATCAAGAAGAAGCTCCTTAAGAT 356
|||||| |||||||||||||| ||||||||||||||||||||||| || || ||||||||
Sbjct 421 AACAGATAACGAAATAAAAAACCATTGGAATACTCATATCAAGAAAAAACTTCTTAAGAT 480
Query 357 GGAAATCGATCCT-TCGACCCATCAACCT 384
|| |||||| ||| | |||||||||||||
Sbjct 481 GGGAATCGACCCTAT-GACCCATCAACCT 508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5