BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12360.1
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490040 jgi|Araly1|490040|fgenesh2_kg.6__3174__AT4G12360.1 723 0.0
> Ahg490040 jgi|Araly1|490040|fgenesh2_kg.6__3174__AT4G12360.1
Length=557
Score = 723 bits (391), Expect = 0.0
Identities = 507/562 (90%), Gaps = 12/562 (2%)
Strand=Plus/Plus
Query 24 GTGTATATACATACTAATTAAGGAAGCATCAAAAACAAAAGAAAACGATTCTCCCACGAT 83
|||| |||| ||||||||||| |||||| | |||||||||||||||||| ||||||||||
Sbjct 1 GTGTGTATATATACTAATTAATGAAGCACCTAAAACAAAAGAAAACGATCCTCCCACGAT 60
Query 84 T-A-ATAATGGCTCAAACCACCACCTTGATCTTACTCCTAGCCACATTGCTAG-TGGCAG 140
| | ||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||
Sbjct 61 TAAGATAATGGCTCAAACCACCACCGTGATCTTCCTCCTAGCCACATTGCT-GATGGCAG 119
Query 141 CTACGACTGTTTCAGGACAGGGACCTCATATTCCGCTGGCTCCTAGTCCTTCAGTCAACG 200
||| |||||| |||||||| ||||| ||| |||| |||||||||||||||||||||||||
Sbjct 120 CTATGACTGTATCAGGACACGGACCACATCTTCCACTGGCTCCTAGTCCTTCAGTCAACG 179
Query 201 AAGCTATGAACTGTGCGGCTGGTTTGGCTGTTTGTCTTCCGGCAATTACTCAGCGAGGAC 260
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 AAGTTATGAACTGTGCGGCTGGTTTGGCTGTTTGTCTTCCGGCAATTACTCAGGGAGGAC 239
Query 261 CTCCGTCGC-AGGAATGCTGCACAGCCGTAGAGACGGCG-TTGACAACTCAGCTATCTTG 318
||||| ||| || |||||||||| ||| ||||||| ||| || | |||||||||| ||||
Sbjct 240 CTCCGACGCCAG-AATGCTGCACCGCCTTAGAGACCGCGGTTAA-AACTCAGCTACCTTG 297
Query 319 TCTTTGCGGT-TTCATCAAAAGTCCAATGTTGTTGATCCCTTTCAATGTCACCGACTT-C 376
||||||||| || |||||||| |||| |||||||||||||||||||||||||| ||| |
Sbjct 298 TCTTTGCGGACTT-ATCAAAAGCCCAACGTTGTTGATCCCTTTCAATGTCACCG-CTTTC 355
Query 377 AATGCTCTTTTCTCCAAAACTTGTGGACTCACCACTGATCCCAACTTGTGTTCCGAAACT 436
||||||||| ||||| ||||||||||||||||| | ||||||||| |||||||||||| |
Sbjct 356 AATGCTCTTCTCTCCCAAACTTGTGGACTCACCGCCGATCCCAACATGTGTTCCGAAATT 415
Query 437 GCCGCCCAGGCTCCTTTGCCGAAGACGGCAGCACCTGTTCCAGGAGCACCCAAATCTGAC 496
| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 416 GTAGCCCAAGCTCCTTTGCCGCAGACGGCAGCACCTGTTCCAGGACCACCCAAATCTGAC 475
Query 497 AAGGATGCCGCAAGCAAACTCGCGGGAACAGGCTTGGTCGGAATCGTCGTGATCACGATT 556
||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 476 AAGAATGCTGCAAGCAAACTCGCGGGAACAGGCTTGGTCGGCGTCGTCTTGATCACGATC 535
Query 557 GCTGCGATGTTTTATTAAAATT 578
|||||||||||||||| |||||
Sbjct 536 GCTGCGATGTTTTATTGAAATT 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27486623157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5