BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12370.1 Length=903 Score E Sequences producing significant alignments: (Bits) Value Ahg490041 jgi|Araly1|490041|fgenesh2_kg.6__3175__AT4G12370.1 1201 0.0 > Ahg490041 jgi|Araly1|490041|fgenesh2_kg.6__3175__AT4G12370.1 Length=902 Score = 1201 bits (650), Expect = 0.0 Identities = 823/907 (91%), Gaps = 10/907 (1%) Strand=Plus/Plus Query 1 ATGTACTTACCAAAACGTGGCAATTTGTTCGAACTCTATGATCCATTGCATCAGAAGATG 60 ||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| || Sbjct 1 ATGTACTTACCTAAACGTGGCAACTTGTTCGAACTCTACGATCCATTGCAGCAGAAGTTG 60 Query 61 TACACATTGAATCTACCTGAGCTTGCCAAATCTACGGTTTGTTACTCAAGAGATGGATGG 120 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 TACACATTGAATCTACCCGAGCTTGCCAAATCTACGGTTTGTTACTCAAGAGACGGATGG 120 Query 121 TTACTAATGCGTAAAACCATTTCAAGAGAAATGTTCTTCTTCAACCCGTTTACTCGTGAG 180 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 121 TTACTAATGCGCAAAACCATTTCAAGCGAAATGTTCTTCTTCAACCCGTTTACTCGTAAG 180 Query 181 CTCATAAACGTACCAAAATGTACTTTATCATATGATGCGATCGCTTTCTCTTGTGCACCT 240 ||||| ||| ||||||| ||| | ||||| |||||||| ||||||||||||||||||||| Sbjct 181 CTCATTAACTTACCAAAGTGTGCGTTATCTTATGATGCCATCGCTTTCTCTTGTGCACCT 240 Query 241 ACATCAGGTACTTGCGTGTTGCTAGCATTTAAGCATGTTTCGTATCGTATCACCACTACG 300 |||||||||||||||||||||||||| |||||||||||| | ||| |||||||| ||||| Sbjct 241 ACATCAGGTACTTGCGTGTTGCTAGCGTTTAAGCATGTTGCCTATGGTATCACCGCTACG 300 Query 301 AGCACTTGCCATCCCAAAGCAACCGAGTGGGTTACTGAGGATCTACAATTCCATCGTCGC 360 ||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| || Sbjct 301 AGCACTTGCCATCCCGAAGCAACCGAGTGGGTTACTGAGGATTTACATTTCCATCTTCAT 360 Query 361 TTCCGCAGTGAAACACTTAACCACAGCAATGTTGTCTATGCCAAACGTCGCTTCTATTGC 420 || |||| || ||||| || |||||||||||||||||||| ||||||| |||||||||| Sbjct 361 TTTGGCAGCGATACACTAAAACACAGCAATGTTGTCTATGCGAAACGTCACTTCTATTGC 420 Query 421 CTTGACGGTCAAGGAAGCTTATATTACTTTGATCCGTCTTCTCGAAGA-TGGGATTTTAG 479 ||||||||||||||| ||||||||||||||||||| ||||||||| || ||| |||||| Sbjct 421 CTTGACGGTCAAGGACGCTTATATTACTTTGATCCCTCTTCTCGA-GAATGGCATTTTAT 479 Query 480 TTAC-ACCTATT-TACTGCCATGTCCTTATATCTCGGATAGATTTAGTTACC-AGTATGA 536 ||| | ||| | | |||||||||||||||||||| |||| ||||||||| | ||||| Sbjct 480 TTATGAG-TATAAT-CAGCCATGTCCTTATATCTCGGGTAGACTTAGTTACCGA-TATGA 536 Query 537 GCGGAAGAAGAAGAGAATTTTCTTGGCTGTGCGGAAAGGAGTGTTCTTTAAGATATTTAC 596 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 537 GCGGAAGAAGAAGAGAATTTTATTGGCTGTGCGGAAAGGAGTGTTCTTTAAGATATATAC 596 Query 597 ATGTGATGGTGAGAAGCCGATAGTGCATAAGTTAGAAGAT-ATCAATTGGGAGGAGATCA 655 ||| | ||||||||||||||| ||| |||| |||||||| | ||| ||||||||||||| Sbjct 597 ATGCGGTGGTGAGAAGCCGATTGTGTATAAATTAGAAGACGA-CAAATGGGAGGAGATCA 655 Query 656 ATAGTACTACGATTGATGGATTGACAATCTTTACGGGTCTTTATTCCTCTGAGGTGAGAC 715 ||||||||| | ||||||| ||||||||||||||||| ||| ||||||||||| ||||| Sbjct 656 ATAGTACTATGCTTGATGGCTTGACAATCTTTACGGGGCTTCATTCCTCTGAGATGAGAG 715 Query 716 TTAATCTACCATGGATGAGGAATAGTGTTTACTTTCCTAGACTTCGTTTTAATGTCAAGC 775 ||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||||| Sbjct 716 TTAATCTCCCATGGATGAGGAATAGTGTTTACTTCCCGAGGCTTCGTTTTAAAGTCAAGC 775 Query 776 GTTGTGTATCATATTCGCTTGATGAAGAGAGGTATTATCCGCGGAAGCAGTGGCAAGAAC 835 |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 776 GTTGTGTATCATATTCATTTGATGAAGAGAGGTATTATCCGCGTAAGCAGTGGCAAGAAC 835 Query 836 AGGAGGATTTATGTCCTATTGAGAATCTTTGGATTAGGCCACCGAAGAAAGCTGTAGATT 895 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | Sbjct 836 AGGAGGATTTATGTCCTCTTGAGAATCTTTGGATTAGGCCACCGAAGAAAGCTTTAGACT 895 Query 896 TCATGTG 902 |||||| Sbjct 896 ACATGTG 902 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33471921126 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5