BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12370.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490041 jgi|Araly1|490041|fgenesh2_kg.6__3175__AT4G12370.1 1201 0.0
> Ahg490041 jgi|Araly1|490041|fgenesh2_kg.6__3175__AT4G12370.1
Length=902
Score = 1201 bits (650), Expect = 0.0
Identities = 823/907 (91%), Gaps = 10/907 (1%)
Strand=Plus/Plus
Query 1 ATGTACTTACCAAAACGTGGCAATTTGTTCGAACTCTATGATCCATTGCATCAGAAGATG 60
||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| ||
Sbjct 1 ATGTACTTACCTAAACGTGGCAACTTGTTCGAACTCTACGATCCATTGCAGCAGAAGTTG 60
Query 61 TACACATTGAATCTACCTGAGCTTGCCAAATCTACGGTTTGTTACTCAAGAGATGGATGG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TACACATTGAATCTACCCGAGCTTGCCAAATCTACGGTTTGTTACTCAAGAGACGGATGG 120
Query 121 TTACTAATGCGTAAAACCATTTCAAGAGAAATGTTCTTCTTCAACCCGTTTACTCGTGAG 180
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 121 TTACTAATGCGCAAAACCATTTCAAGCGAAATGTTCTTCTTCAACCCGTTTACTCGTAAG 180
Query 181 CTCATAAACGTACCAAAATGTACTTTATCATATGATGCGATCGCTTTCTCTTGTGCACCT 240
||||| ||| ||||||| ||| | ||||| |||||||| |||||||||||||||||||||
Sbjct 181 CTCATTAACTTACCAAAGTGTGCGTTATCTTATGATGCCATCGCTTTCTCTTGTGCACCT 240
Query 241 ACATCAGGTACTTGCGTGTTGCTAGCATTTAAGCATGTTTCGTATCGTATCACCACTACG 300
|||||||||||||||||||||||||| |||||||||||| | ||| |||||||| |||||
Sbjct 241 ACATCAGGTACTTGCGTGTTGCTAGCGTTTAAGCATGTTGCCTATGGTATCACCGCTACG 300
Query 301 AGCACTTGCCATCCCAAAGCAACCGAGTGGGTTACTGAGGATCTACAATTCCATCGTCGC 360
||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 301 AGCACTTGCCATCCCGAAGCAACCGAGTGGGTTACTGAGGATTTACATTTCCATCTTCAT 360
Query 361 TTCCGCAGTGAAACACTTAACCACAGCAATGTTGTCTATGCCAAACGTCGCTTCTATTGC 420
|| |||| || ||||| || |||||||||||||||||||| ||||||| ||||||||||
Sbjct 361 TTTGGCAGCGATACACTAAAACACAGCAATGTTGTCTATGCGAAACGTCACTTCTATTGC 420
Query 421 CTTGACGGTCAAGGAAGCTTATATTACTTTGATCCGTCTTCTCGAAGA-TGGGATTTTAG 479
||||||||||||||| ||||||||||||||||||| ||||||||| || ||| ||||||
Sbjct 421 CTTGACGGTCAAGGACGCTTATATTACTTTGATCCCTCTTCTCGA-GAATGGCATTTTAT 479
Query 480 TTAC-ACCTATT-TACTGCCATGTCCTTATATCTCGGATAGATTTAGTTACC-AGTATGA 536
||| | ||| | | |||||||||||||||||||| |||| ||||||||| | |||||
Sbjct 480 TTATGAG-TATAAT-CAGCCATGTCCTTATATCTCGGGTAGACTTAGTTACCGA-TATGA 536
Query 537 GCGGAAGAAGAAGAGAATTTTCTTGGCTGTGCGGAAAGGAGTGTTCTTTAAGATATTTAC 596
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 537 GCGGAAGAAGAAGAGAATTTTATTGGCTGTGCGGAAAGGAGTGTTCTTTAAGATATATAC 596
Query 597 ATGTGATGGTGAGAAGCCGATAGTGCATAAGTTAGAAGAT-ATCAATTGGGAGGAGATCA 655
||| | ||||||||||||||| ||| |||| |||||||| | ||| |||||||||||||
Sbjct 597 ATGCGGTGGTGAGAAGCCGATTGTGTATAAATTAGAAGACGA-CAAATGGGAGGAGATCA 655
Query 656 ATAGTACTACGATTGATGGATTGACAATCTTTACGGGTCTTTATTCCTCTGAGGTGAGAC 715
||||||||| | ||||||| ||||||||||||||||| ||| ||||||||||| |||||
Sbjct 656 ATAGTACTATGCTTGATGGCTTGACAATCTTTACGGGGCTTCATTCCTCTGAGATGAGAG 715
Query 716 TTAATCTACCATGGATGAGGAATAGTGTTTACTTTCCTAGACTTCGTTTTAATGTCAAGC 775
||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||||
Sbjct 716 TTAATCTCCCATGGATGAGGAATAGTGTTTACTTCCCGAGGCTTCGTTTTAAAGTCAAGC 775
Query 776 GTTGTGTATCATATTCGCTTGATGAAGAGAGGTATTATCCGCGGAAGCAGTGGCAAGAAC 835
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 776 GTTGTGTATCATATTCATTTGATGAAGAGAGGTATTATCCGCGTAAGCAGTGGCAAGAAC 835
Query 836 AGGAGGATTTATGTCCTATTGAGAATCTTTGGATTAGGCCACCGAAGAAAGCTGTAGATT 895
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 836 AGGAGGATTTATGTCCTCTTGAGAATCTTTGGATTAGGCCACCGAAGAAAGCTTTAGACT 895
Query 896 TCATGTG 902
||||||
Sbjct 896 ACATGTG 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5