BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12390.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490042 jgi|Araly1|490042|fgenesh2_kg.6__3176__AT4G12390.1 1027 0.0
> Ahg490042 jgi|Araly1|490042|fgenesh2_kg.6__3176__AT4G12390.1
Length=714
Score = 1027 bits (556), Expect = 0.0
Identities = 649/692 (94%), Gaps = 13/692 (2%)
Strand=Plus/Plus
Query 45 ACACACACACCAATGGAACCAAAGCTAACCCATCTTTGTTATTGCCTTCTACTTTTTCTT 104
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 28 ACACACACACCAATGGAACCAAAGCTAACCCATCTTTGCTATTGCCTTCTACTTTTTCTT 87
Query 105 CCACTACTCTGCCAATCCACCATAGCCAAACCTTCATCATCACCAAACCCTAGCAG---C 161
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 88 CCACTACTCTCCCAATCCACCATAGCCAAACCTTCATCATCACCAAACCCTAGCAATAAC 147
Query 162 AGCATCAACTTCATTGTCTCATCATGCCGCGTCACGCGTTACCAAACTCTCTGCGTCAAA 221
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 148 AGCATCAACTTCATTGTCTCATCATGCCGTGTCACGCGTTACCAAACTCTCTGCGTCAAA 207
Query 222 TGCCTTGCCGCTTTTGC-AGACAAAATCCGCCGCAACGAAAACCAGTTAGCTCAAACCGC 280
||||| ||| |||| || | |||||||||||||||||||||||| |||| ||||||||||
Sbjct 208 TGCCTCGCCACTTTCGCCA-ACAAAATCCGCCGCAACGAAAACCGGTTAACTCAAACCGC 266
Query 281 TTTAGCCGTTACTCTAGTCCGGGTTCAGTCCACGACAATCTATGTAGGGAAGCTGACTAA 340
|||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||
Sbjct 267 TTTAGCCGTTACTCTAGTCCGGGTCCAGTCCACGACGGTCTACGTAGCCAAGCTGACTAA 326
Query 341 AGCTAGGAGAATCAAAAGGAGAGAGTACTTAGCCGTGAAGGATTGTGTTGAAAATCTTGG 400
|||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 327 AGCTCGGAGAATCAAACGGAGAGAGTACTTAGCCGTGAAGGATTGTGTTGAGAATCTTGG 386
Query 401 AGACGGTTTAGAGATGTTGGCTCAGTCGATGAGGGAGTTGA-AGCAAGTTGGTCGATCTG 459
||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 387 AGACGGTTTAGAGATGTTGGCTCAGTCGATGAGGGAGTTGAGA-CAAGTTGGTGGATCTG 445
Query 460 GTCGTGATCGAGACGAGTTCTTGTGGAGACTAAGTAACGTTGAGACTTGGGTTAGTGCTG 519
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 446 GTCGTGATCGAGACGAGTTCTTGTGGAGGCTAAGTAACGTTGAGACATGGGTTAGTGCTG 505
Query 520 CCTTAACGGATGAGACAACGTGTCTGGATGGGTTCGATGGAAAGGTTATGGACGGTGTGG 579
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 506 CCTTAACGGATGAGACAACGTGTCTTGATGGGTTCGATGGAAAGGTTATGGACGGTGTGG 565
Query 580 TAAAATCAGCGATTAGAAGAAGAGTGGTTCATGTGGCTCGAGTTACTAGTAATGCATTGG 639
| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 566 TGAAATCGGCGATAAGAAGACGAGTGGTTCATGTGGCTCGAGTTACTAGTAATGCTTTGG 625
Query 640 CTCTTGTAAACCGGTTCGCGGCTAGGCATAAGTCATAGAATATTCGGCTAATAAATTAAA 699
||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||
Sbjct 626 CTCTTGTAAACCGGTTCGCGGCTCGGCATAAGTCATAG--T-TTCGGGTAATAAATTAAA 682
Query 700 ATTCGGTCCT--T-AATAAGGTTTTGTCATGT 728
|||||||||| | ||| ||||||||||||||
Sbjct 683 ATTCGGTCCTAATTAATTAGGTTTTGTCATGT 714
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 ATGCCTTTTAATTGAAACGCACCACAAA 28
||||||||||||||||||||||||||||
Sbjct 1 ATGCCTTTTAATTGAAACGCACCACAAA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5