BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G12400.2

Length=2006
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940212 jgi|Araly1|940212|scaffold_600756.1                        315    1e-84


> Ahg940212 jgi|Araly1|940212|scaffold_600756.1
Length=325

 Score =  315 bits (170),  Expect = 1e-84
 Identities = 193/204 (95%), Gaps = 1/204 (0%)
 Strand=Plus/Minus

Query  256  CTTACGCTTCTCTCCACCGTTACGAAGAAGCTTTATCAGACGCGAAGAAGACTATAGAGC  315
            |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  323  CTTACG-TTCTCTCCACCGTTACGAAGAAGCTTTATCCGACGCGAAGAAGACTATAGAGC  265

Query  316  TTAAACCTGATTGGTCTAAAGGATATAGCCGATTAGGTGCTGCGTTTATTGGATTGTCCA  375
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  264  TTAAACCTGATTGGTCTAAAGGATATAGCCGATTAGGAGCTGCGTTTATTGGATTGTCTA  205

Query  376  AGTTTGATGAAGCGGTTGATTCGTATAAGAAAGGATTAGAGATTGATCCGAGTAATGAGA  435
            ||||||| |||||| ||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct  204  AGTTTGAAGAAGCGATTGATGCATATAAGAAAGGATTAGAGATTGATCCGAGTAACGAGA  145

Query  436  TGCTTAAATCGGGATTAGCTGATG  459
             ||||||||| |||||||||||||
Sbjct  144  CGCTTAAATCTGGATTAGCTGATG  121



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 75418685100


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5