BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12410.1
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943146 jgi|Araly1|943146|scaffold_603690.1 708 0.0
> Ahg943146 jgi|Araly1|943146|scaffold_603690.1
Length=525
Score = 708 bits (383), Expect = 0.0
Identities = 466/504 (92%), Gaps = 14/504 (3%)
Strand=Plus/Plus
Query 143 AATCTGATTAAAACCAAGCATGAAGAGAGTCAGAGGGTTCAAAATTGGACACAGATTTGT 202
||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 5 AATCTGA-TCAAACCAAGCATGAAGAGAGTCAGAGGATTCAAAATTGGACACAGATTTGT 63
Query 203 CAAAAT-TTTCAAAT-G--GA---TACCAAG-AAA---CAGATGCCCGACCCGAATCACA 251
|||||| ||| |||| | || ||||||| ||| || |||||||||||||||||||
Sbjct 64 CAAAATCTTT-AAATGGATGATTCTACCAAGAAAACGTCA-ATGCCCGACCCGAATCACA 121
Query 252 AACCCGGTTACCGGAATCCGGTCATTAGCACGGTGTTTAAGCCGTGGAGCTAAGAGATTG 311
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AACCCGGTTTCCGGAATCCGGTCATTAGCACGGTGTTTAAGCCGTGGAGCTAAGAGATTG 181
Query 312 TGCGGTGGAAGCAAGAAGAATCCGGGTCAGAATCAGATCCGGTTGGGTAAGGATCCGAAA 371
|||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 182 TGCGGTGGTGGTAAGAAGAATCCGGGTCAGAATCAGATCCGATTGGGTAAGGATCCGAAA 241
Query 372 AAGTCGAACCGGGTTGTTCCTCGAGGACATTTGGTGGTTCATGTCGGCGAATCAGACGAT 431
| |||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |
Sbjct 242 ACGTCGAACCGGGTTGTTCCGAGAGGACATTTGGTGGTTCACGTTGGCGAATCAGACGGT 301
Query 432 GACACGCGGCGAGTTGTGGTGCCGGTGATTTACTTTAATCATCCATTGTTTGGAGAATTG 491
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 302 GACACGCGGCGAGTTGTGGTGCCAGTGATTTACTTTAATCATCCATTGTTTGGAGAATTG 361
Query 492 TTGGAGCAAGCGGAGCGGGTTCATGGGTTTGATCAACCGGGTCGGATCACTATTCCTTGT 551
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 362 TTGGAGCAAGCGGAGCGGGTTCATGGGTTTGATCAACCGGGTCGGATCACGATACCGTGT 421
Query 552 CGGGTTTCGGATTTTGAAAAAGTCCAGTTGAGGATCGCTGCATGGGATCATTGCCGCAGG 611
||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||| |||
Sbjct 422 CGGGTTTCGGATTTTGAGAAAGTTCAGATGAGGATCGCCGCATGGGATCATTGCCGTAGG 481
Query 612 AAAAATTCTTACAAGATTATATAA 635
|||| ||| |||||||||||||||
Sbjct 482 AAAAGTTCGTACAAGATTATATAA 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23254979370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5