BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12420.1
Length=2249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943148 jgi|Araly1|943148|scaffold_603692.1 2806 0.0
Ahg916339 jgi|Araly1|916339|Al_scaffold_0008_1090 176 6e-43
> Ahg943148 jgi|Araly1|943148|scaffold_603692.1
Length=1806
Score = 2806 bits (1519), Expect = 0.0
Identities = 1716/1812 (95%), Gaps = 9/1812 (0%)
Strand=Plus/Plus
Query 185 tttgcgagaga-aaaaaaagaaaaTGGATTTGTTCAAGATCCTTCTTCTTGTGTTCTTCG 243
||||| ||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TTTGCAAGAGAGAAAACAAG-AAATGGATTTGTTCAAGATCCTGCTTCTTGTGTTCTTCG 59
Query 244 TGAACATAAGTTTCTGCTTCGCTGCAGATCCATATTCTTTCTATAACTTCGAAGTCTCTT 303
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 60 TGAACATAAGTTTCTGCTTCGCTGCAGATCCTTATTCTTTCTATAACTTCGAAGTCTCCT 119
Query 304 ACATTACTGCTTCTCCTCTTGGTGTCCCTCAACAGGTCATTGCTATAAATGGAAAGTTTC 363
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 ACATTACTGCTTCTCCACTTGGTGTTCCTCAACAGGTCATTGCTATAAATGGAAAGTTTC 179
Query 364 CTGGTCCTACAATCAATGTTACAACCAATGAAAATCTGGTTGTTAATGTCAGAAACAAGT 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 CTGGTCCTACAATCAATGTTACAACCAATGAAAATCTGGTTGTTAATGTCAGAAACAAAT 239
Query 424 TAGACGAGGGACTTCTTCTTCATTGGAATGGAATCCAACAGAGACGTGTGTCATGGCAAG 483
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 TGGATGAGGGACTTCTTCTTCATTGGAATGGAATCCAACAGAGACGTGTTTCATGGCAAG 299
Query 484 ATGGAGTTTTAGGAACCAATTGTCCAATCCCACCAAAGTGGAATTGGACTTATGAGTTTC 543
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 300 ATGGAGTTTTAGGAACCAATTGTCCTATTCCTCCAAAGTGGAATTGGACTTATGAGTTTC 359
Query 544 AAGTTAAAGACCAAATTGGTAGTTTCTTCTACTTTCCATCTCTACATTTCCAGAGAGCTT 603
||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||| |||||
Sbjct 360 AAGTTAAGGACCAAATTGGGAGTTTCTTCTACTTTCCTTCTCTCCATTTCCAGAAAGCTT 419
Query 604 CTGGTGGTTTTGGCTCCTTTGTTGTCAATCCTAGAGCTATTATTCCAGTCCCTTTCTCTA 663
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 420 CTGGTGGTTTTGGCTCCTTCATTGTCAATCCTAGAGCGATTATTCCAGTCCCTTTCTCGA 479
Query 664 CTCCAGACGGTGATATTACCGTTACCATTGGTGATTGGTACATAAGGAACCACACGGCTT 723
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 CTCCAGACGGCGATATTACCGTTACGATTGGTGATTGGTACATAAGGAACCACACGGCTT 539
Query 724 TGAGGAAGGCTTTGGATGATGGTAAAGATCTTGGAATGCCTGATGGAGTTCTCATTAATG 783
||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 540 TGAGGAAGGCTTTAGATGATGGTAAAGATCTTGGAATGCCCGATGGAGTTCTTATTAACG 599
Query 784 GAAAAGGACCTTACCGATACAATGACACGCTTGTTGCTGATGGGATCGATTTCGAAACAA 843
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 600 GAAAAGGACCTTACCGATACAATGACACTCTTGTTGCTGATGGGATTGATTTTGAAACAA 659
Query 844 TCACAGTCCATCCTGGAAAAACTTATAGACTTCGAGTGTCGAATGTGGGAATCTCGACGA 903
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 660 TCACAGTCCATCCTGGGAAAACTTATAGACTTCGAGTGTCAAATGTGGGAATTTCGACGA 719
Query 904 GTTTGAACTTTAGGATTCAAGGTCACAACTTAGTTCTTGCGGAATCAGAAGGATCATACA 963
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 720 GCTTGAACTTTAGGATTCAAGGTCACAACTTAGTTCTTGCGGAATCCGAAGGATCGTACA 779
Query 964 CAGTTCAACAAAACTATACAAGCTTGGATATTCATGTTGGACAGTCTTATTCTTTCTTGG 1023
|||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct 780 CAGTTCAACAAAACTACACTAGCTTGGATATTCATGTTGGGCAGTCTTATTCATTCTTGG 839
Query 1024 TTACAATGGATCAAAACGCGAGCTCTGATTACTACATTGTCGCGAGTGCTCGGGTTGTTA 1083
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 840 TTACAATGGATCAAAACGCGAGCTCTGATTACTATATTGTTGCGAGTGCTCGGGTTGTTA 899
Query 1084 ACGAAACCATATGGAGAAGAGTCACTGGAGTTGGAATCTTGA-AGTATACCAACTCTAAA 1142
| |||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||
Sbjct 900 ATGAAACCATATGGAGAAGAGTTACTGGAGTTGGAATCTT-ACACTATACCAACTCTAAA 958
Query 1143 GGAAAAGCTAAAGGTCAGTTACCCCCTGGACCACAAGACGAATTCGACAAAACTTTCTCC 1202
||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 959 GGAAAAGCTAAAGGTCACTTACCGCCTGGACCACTAGACGAATTCGACAAGACTTTCTCC 1018
Query 1203 ATGAATCAAGCAAGATCCATCAGATGGAATGTATCAGCAAGTGGTGCACGTCCTAACCCG 1262
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1019 ATGAATCAAGCAAGATCCATCAGATGGAATGTATCAGCAAGTGGTGCGCGTCCTAACCCG 1078
Query 1263 CAAGGATCATTTAAATACGGTTCGATCAATGTAACCGATGTCTACGTTCTAAGGAACATG 1322
||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1079 CAAGGCTCGTTTAAATATGGTTCAATCAATGTAACCGATGTCTACGTTCTGAGGAATATG 1138
Query 1323 CCGCCTGTGACGATTAGTGGGAAGAGAAGAACAACGCTTAATGGCATATCGTTCAAGAAT 1382
|||||||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||
Sbjct 1139 CCGCCTGTGACGATTAATGGGAAGCGAAGAACAACTCTTAATGGCATATCGTTTAAGAAT 1198
Query 1383 CCTTCAACACCTATTAGACTAGCTGATAAGCTTAAAGTTAAAGATGTGTATAAGCTTGAT 1442
||||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1199 CCTTCTACGCCTATTAGACTAGCCGATAAGTTTAAAGTTAAAGATGTGTATAAGCTTGAT 1258
Query 1443 TTCCCTAAGAGACCTTTAACTGGACCAGCTAAAGTGGCGACTTCGATTATCAATGGTACT 1502
|||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |||
Sbjct 1259 TTCCCTAAGAGACCTTTAACTGGACCGGCCAAAGTGGAGACTTCGATTATCAATGGCACT 1318
Query 1503 TATCGTGGATTCATGGAAGTCGTTCTTCAGAACAATGACACTAAGATGCAAAGCTATCAC 1562
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1319 TATCGTGGATTCATGGAAGTCGTTCTTCAAAACAATGACACTAAGATGCAAAGCTATCAC 1378
Query 1563 ATGAGTGGCTACGCCTTCTTTGTCGTCGGTATGGATTATGGAGAGTGGACAGAGAACAGT 1622
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1379 ATGAGTGGCTACGCCTTTTTTGTCGTCGGTATGGATTACGGAGAGTGGACAGAGAACAGT 1438
Query 1623 AGAGGAACATACAACAAATGGGATGGTATCGCGCGTTCCACTATTCAGGTGTATCCAGGG 1682
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1439 AGAGGAACATACAACAAATGGGATGGTATCGCCCGCTCCACTATTCAGGTGTATCCAGGG 1498
Query 1683 GCATGGTCAGCGATATTGATATCATTAGACAATCCTGGAGCTTGGAATCTAAGAACAGAG 1742
|||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1499 GCATGGTCAGCGATCTTGATATCAATGGACAATCCTGGAGCTTGGAATCTAAGAACAGAG 1558
Query 1743 AATCTTGATTCGTGGTATCTTGGACAAGAAACTTACGTTAGAGTGGTTAATCCAGACGAA 1802
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1559 AATCTTGATTCTTGGTATCTTGGACAAGAAACTTATGTTAGAGTGGTTAATCCAGACGAA 1618
Query 1803 AACAACAAAACCGAATTCGGACACCCTGACAATGTTCTTTACTGTGGTGCTCTCAGCAAA 1862
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AACAACAAAACCGAATTCGGGCACCCTGACAATGTTCTTTACTGTGGTGCTCTCAGCAAA 1678
Query 1863 CTACAAAAGCCACAGAAGGTTTCATCGTCGGCATCGAAGA-GCATTGGATTCACGAGTCT 1921
|||||||||||||||||| |||||||| |||| |||| || |||||||||||||||||||
Sbjct 1679 CTACAAAAGCCACAGAAGATTTCATCGGCGGCGTCGA-GAAGCATTGGATTCACGAGTCT 1737
Query 1922 TTCTATGGTGGTAATGGCTTTGGTGATGATGATGATGCTTCAGCATTGAAATTGTTAAAT 1981
||| ||||||||||||||||||||||||||||||||| |||||||||||||| || || |
Sbjct 1738 TTCAATGGTGGTAATGGCTTTGGTGATGATGATGATGATTCAGCATTGAAAT-GT-AATT 1795
Query 1982 CTGAGGGTTTGT 1993
|||||||||||
Sbjct 1796 -TGAGGGTTTGT 1806
> Ahg916339 jgi|Araly1|916339|Al_scaffold_0008_1090
Length=1671
Score = 176 bits (95), Expect = 6e-43
Identities = 253/326 (78%), Gaps = 24/326 (7%)
Strand=Plus/Plus
Query 297 GTCTCTTACAT-TACTGCTTCTCCTCTT-GGTGTC-CCTCAACAGGTCATTGCTATAAAT 353
||||||||| | | ||||||||||| || || | | ||||||||| |||| ||||||
Sbjct 103 GTCTCTTACCTCT-CTGCTTCTCCT-TTCGG-CACTCGTCAACAGGTAATTGGGATAAAT 159
Query 354 -GGAAAGTTTCCTGGTCCTACAATCAATGTTACAACCAA-TGAAAATCTGGTTGTTAATG 411
|| || ||||||||||| | | || || || || || || ||| | ||| | ||||
Sbjct 160 GGGCAA-TTTCCTGGTCCGATTCTAAACGTAACTACGAATTG-GAATGTTGTTATGAATG 217
Query 412 T-CAGAAACAAGT-TAGACGAGGGACTT-CTTCTT-CATTGGAATGGAATCCAACAGA-G 466
| || || || | | || ||| | || |||||| || |||||||| || ||||| | |
Sbjct 218 TGAAG-AATAA-TCTTGATGAGCCA-TTGCTTCTTACA-TGGAATGGGATACAACATAGG 273
Query 467 ACGTGTGTCATGGCAAGATGGAGTTTTAGGAACCAATTGTCCAATCCCACCAAAG-TGGA 525
| | |||||||||||||| ||||| ||||| ||||||||||| || | | ||||
Sbjct 274 AAAAAT-TCATGGCAAGATGGTGTTTTGGGAACTAATTGTCCAATTCCTTC-TGGTTGGA 331
Query 526 ATTGGACTTATGAGTTTCAAGTTAAAGACCAAATTGGTAGTTTCTTCTACTTTCCATCT- 584
|||||||||||||||||||||||||||| || |||||||||||||| || |||||||||
Sbjct 332 ATTGGACTTATGAGTTTCAAGTTAAAGATCAGATTGGTAGTTTCTTTTATTTTCCATCTA 391
Query 585 CTACATTTCCAGAGAGCTTCTGGTGG 610
| | |||| |||||||||||||||||
Sbjct 392 CAA-ATTTTCAGAGAGCTTCTGGTGG 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84674614635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5