BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12432.1 Length=1766 Score E Sequences producing significant alignments: (Bits) Value Ahg490048 jgi|Araly1|490048|fgenesh2_kg.6__3182__AT4G12432.1 2228 0.0 Ahg492609 jgi|Araly1|492609|fgenesh2_kg.7__2042__AT4G22592.1 944 0.0 > Ahg490048 jgi|Araly1|490048|fgenesh2_kg.6__3182__AT4G12432.1 Length=1692 Score = 2228 bits (1206), Expect = 0.0 Identities = 1470/1591 (92%), Gaps = 43/1591 (3%) Strand=Plus/Plus Query 1 TTTCTTCTCTTCCTCCTACATTCTCGACTCTCTCTTTTTATTAGGGTTTTCAATTT---T 57 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1 TTTCTTCTCTTCCTCCTACATTCTCGACTCTCTC--TTTATTAGGGTTTTCAATTTCAAT 58 Query 58 --AATC--aaaaaaaaaCCCTCAAATCTCATTTTTGGA--TTTGGTTTCTTCTGCGATCT 111 || | ||||||||| |||||||| ||| |||| || ||| |||||| |||||||| Sbjct 59 CAAAACAAAAAAAAAAAACCTCAAATTTCAATTTTAGATTTTTTTTTTCTTTTGCGATCT 118 Query 112 CTGAGATTCAATTTCTTCTATCAAAGGAAACAAAAAACTTCATCTTTCCGAAGAtttttt 171 ||||||||| |||||||| ||||||||||| ||||| ||||||||||| | ||| ||||| Sbjct 119 CTGAGATTC-ATTTCTTCGATCAAAGGAAATAAAAATCTTCATCTTTCTGGAGA-TTTTT 176 Query 172 ttCCTTCCTTCTGGAGCTCTTTTGAATCAGGTGAATTTCTAATTGAATCTGAAAGTTTAC 231 |||||||||| |||||||||||||||||||| ||||||| |||||||||||||| | ||| Sbjct 177 TTCCTTCCTTTTGGAGCTCTTTTGAATCAGGGGAATTTCAAATTGAATCTGAAAATATAC 236 Query 232 GATGAACAATTTGATATGATGATAAGTTTTGTTTGATGGAGCTTTCACCAACAAGCAGTG 291 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 237 GATGAACAATTGGAGATGATAATAAGTTTTGTTTGATGGAGCTTTCACCAACAAGCAGTG 296 Query 292 ACAAGAAAACAATGAAGAGATGGTTTTTCATAGATAAACGAGTTGGATAGAGTGTTATTG 351 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 297 ACAAGAAAACAATGAAGAGATGGTTTTTCATAGATAAACGAGTTGGATAAAGTGTTTTTG 356 Query 352 AAGATAAA-GAAAGCAAAAAACAGAAGTTCTTGCATTGAAGCATTGGTTTTAGAGTTTAT 410 |||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 357 AAGATAAACAAAAGC-AAAAATAGAAGTTCTTGCATTGAAGCATTGTTTTTAGAGTTTAT 415 Query 411 TGAAGCATTGTTTAGAGTTTTGATTAATGGA-TTTAAACTCAAACCACAAATCCTCTGTT 469 | ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| Sbjct 416 TAAAGCATTGTTTAGAGTTTTGATTAATGGAGTTT-AACTCAAACCACGAATCCTCTGTT 474 Query 470 CTTAAAGATCCTTCACCATCAGTTAACCAATCAAGACTCGGCGTGTCTAGTAGATTTATG 529 | | || | ||| |||| | | ||| || | | | |||||| ||| Sbjct 475 C-TCAA-A----TCATCATC---T-A--AAT--TGA--C-AC----C---TAGATTCATG 510 Query 530 ATGAGTCAATGGAAGAAACCTGCGAAACTCGATGATGTTAGATCCAATGGTTGGTTAGAT 589 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 511 ATGACTCAATGGAAGAAACCTGCGAAACTCGATGATGTTAGATCTAATGGTTGGTTAGAT 570 Query 590 GCAATGATTTCATCTTCTCCACCGCGTAAGAAGCTT-GTCAAAGATTTTAATGTTGAAGT 648 ||||||||||||||||||||||||||||| ||| || || |||||||| ||||| || || Sbjct 571 GCAATGATTTCATCTTCTCCACCGCGTAAAAAG-TTCGTTAAAGATTTCAATGTCGAGGT 629 Query 649 TGCTCCTGAAGATGATTTTGCTCAACGTGCTTGGATGGTGAAATATCCTTCGGCGATTAG 708 |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 630 TGCTCCTGAAGATGATTTTGCTCAACGTGCTTGGATGGTGAAGTATCCTTCAGCGATTAC 689 Query 709 CTCGTTTGCGCATATTGCAGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTA 768 |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 690 CTCGTTTGCGCATATTGCAGCTCAAGCAAAGAAGAAGAAGATTGCTGTATTTTTAGATTA 749 Query 769 TGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAAT 828 |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 750 TGATGGAACTCTTTCTCCTATAGTTGATGATCCTGATCGTGCCATTATGTCTGATGCAAT 809 Query 829 GCGTTCTGCGGTTAAAGATGTCGCGAGTTACTTCCCAACCGCAATAATTAGCGGTAGAAG 888 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 810 GCGTTCCGCGGTTAAAGATGTCGCGAGTTATTTCCCAACCGCAATAATTAGCGGTAGAAG 869 Query 889 CCGTGACAAGGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGG 948 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 870 CCGTGACAAGGTTTATCAGTTGGTAGGACTAACAGAACTCTATTACGCGGGTAGTCATGG 929 Query 949 AATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTGACCAACAGGG 1008 |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| Sbjct 930 AATGGACATAATGACTTCTTCTGATGATACGAATTGTTTCAAATCTACTGACCAACAGGG 989 Query 1009 TAAGGAAGTGAATCTGTTTCAGCCCGCGAGAGAATTCATACCGGTTATCGACGAGGTTTT 1068 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 990 TAAGGAAGTGAATCTGTTTCAGCCCGCTAGAGAATTCATACCGGTAATCGACGAGGTTTT 1049 Query 1069 TAGAACCCTTGTTGAGAAAATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTT 1128 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1050 CAGAACCCTTGTTGAGAATATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTT 1109 Query 1129 CTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGGATTGGCCTATTATTGCTCAGCG 1188 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1110 CTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGGATTGGCCAATTATTGCTCAACG 1169 Query 1189 TGTTCATGACCACTTGAAACAATACCCTCGTTTGCGTCTAACTCATGGGAGGAAGGTTTT 1248 ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1170 TGTTCATGACCACTTGAAACAATACCCTCGTCTGCGGCTAACTCATGGGAGGAAGGTTTT 1229 Query 1249 AGAGGTTCGTCCTGTGATAGACTGGAACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATC 1308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1230 AGAGGTTCGTCCTGTGATAGACTGGAACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATC 1289 Query 1309 TCTCGGATTAAGCAATAAAGACGATTTGCTTCCTATCTACATTGGTGATGACACAACCGA 1368 ||| ||||||||||| |||||||||||||| || ||||||||||| |||||||||||||| Sbjct 1290 TCTTGGATTAAGCAACAAAGACGATTTGCTCCCCATCTACATTGGAGATGACACAACCGA 1349 Query 1369 TGAAGATGCGTTCAAGGTACTGAGAGATGGGAACCGAGGTTTCGGCATCCTAGTATCGTC 1428 ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1350 TGAAGATGCATTCAAGGTACTGAGAGATGGGAACCGAGGTTTCGGTATCTTAGTATCGTC 1409 Query 1429 TATACCGAAAGAAAGCAATGCGTTTTACTCCCTTAGAGATCCATCCGAGGTGAAGAAGTT 1488 ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1410 TATACATAAAGAAAGCAATGCGTTTTACTCCCTTAGAGATCCATCAGAGGTGAAGAAGTT 1469 Query 1489 TCTAAAGACTTTGGTGAAATGGGCAAAGTTGGAGAAGAATTCTACTGGTTTTTGAATAAT 1548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1470 TCTAAAGACTTTGGTGAAATGGGCAAAGTTGGAGAAGAATTCTACTGGTTTTTGAATAAT 1529 Query 1549 ATAGTGGAATTTTATGATTAAATGCTTATTT 1579 |||||||||||| |||| ||||||| ||| Sbjct 1530 ATAGTGGAATTTGCTGATCGAATGCTTGTTT 1560 Score = 213 bits (115), Expect = 4e-54 Identities = 130/137 (95%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 1622 GTTTTAGTCACAGCTTAATTTATGATTTTCCATTTATCTGGTGGAAGTTAAGTTATTAAA 1681 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1557 GTTTTAGTCACAGCTTAATTTATGATTTTCCATTTATCTGGTGGAAATTAAGTTATTAAA 1616 Query 1682 GTTACATGTAAAAGGAATGTTAACGTATTGCATAGTTTTGCCAAAAGACTTTTTCCTTGG 1741 |||| ||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||| Sbjct 1617 GTTATATGTAAAAG-AATGTTAATGTATTGCATAGTTTTGCCAAATGACCTTTTCCTTGG 1675 Query 1742 AGCTCAACTGTTATTAA 1758 | ||||||||||||||| Sbjct 1676 AACTCAACTGTTATTAA 1692 > Ahg492609 jgi|Araly1|492609|fgenesh2_kg.7__2042__AT4G22592.1 Length=1670 Score = 944 bits (511), Expect = 0.0 Identities = 879/1052 (84%), Gaps = 43/1052 (4%) Strand=Plus/Plus Query 521 AGATTTATGATG-AGTCAATGGAAGAA-ACCTGCGAAACTCGATGATGTTAGATCCAATG 578 ||||| |||||| | || | ||||||| | | | |||||||||||||||||||| || | Sbjct 507 AGATTCATGATGAATTCTA-GGAAGAAGA-TTCCTAAACTCGATGATGTTAGATCTAACG 564 Query 579 GTTGGTTAGATGCAATGATTTCATCTTCTCCACCGCGTAAGAA-GCTTGTCAAAGATTTT 637 ||||||| ||||| ||||| || || || ||||||||||| || ||||||||| ||||| Sbjct 565 GTTGGTTGGATGCGATGATATCCTCGTCCCCACCGCGTAA-AAGGCTTGTCAAGGATTTC 623 Query 638 AATGTTGAAG-TTGCTCCTGAAGATGATTTTGCTCAACGTGCTTGGATGGTGAAATATCC 696 || ||| || |||||||||||||||| ||||||||||| || |||||| | || ||||| Sbjct 624 AACATTG-AGATTGCTCCTGAAGATGACTTTGCTCAACGGGCCTGGATGCTCAAGTATCC 682 Query 697 TTCGGCGATTAGCTCGTTTGCGCATATTGCAGCTCAAGCAAAGAAGAAAAAGATTGCTGT 756 ||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 683 TTCAGCGATTACCTCGTTTGCGCATATTGCAGCTCAAGCAAAGAACAAGAAGATAGCTGT 742 Query 757 ATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCAT 816 ||||||||||||||||| || ||||| ||||| |||||||| |||||||| |||||||| Sbjct 743 GTTTCTAGATTATGATGGAACGCTTTCCCCAATCGTTGATGACCCTGATCGCGCCATCAT 802 Query 817 GTCTGATGCAATGCGTTCTGCGGTTAAAGATGTCGCGA-GTTACTTCCCAACCGCAATAA 875 ||||||||| |||||| |||| || ||||||||||| | || |||||||||| ||||||| Sbjct 803 GTCTGATGCGATGCGTGCTGCTGTGAAAGATGTCGCCAAGT-ACTTCCCAACAGCAATAA 861 Query 876 TTAGCGGTAGAAGCCGTGACAAGGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACG 935 |||| |||||||||||||||||||| || || |||||||||||||| ||||| || |||| Sbjct 862 TTAGTGGTAGAAGCCGTGACAAGGTATACCAATTGGTAGGACTAACCGAACTCTACTACG 921 Query 936 CGGGTAGTCATGGAATGGACATAATGACTTCT-TC--TG-A--TGG-TC-C--GAA---- 981 |||||||||| || |||||||||||||| || | | | ||| || | ||| Sbjct 922 CGGGTAGTCACGGGATGGACATAATGACCCCTGTAAATCCACATGGGTCTCCTGAAGACC 981 Query 982 ----TTGTTTCAAATCCACTGACCAACAGGGTAAGGAAGTGAATCTGTTTCAGCCCGCGA 1037 |||| | ||||| ||||||||||||||| |||| || || || |||||||| || | Sbjct 982 CCAATTGTATAAAATCTACTGACCAACAGGGTGAGGAGGTAAACCTCTTTCAGCCTGCTA 1041 Query 1038 GAGAATTCATACCGGTTATCGACGAGGTTTTTAGAACCCTTGTTGAGAAAA-TGAAA-GA 1095 ||| |||||||| || ||||| ||||||| ||| | ||| ||||||| || | ||| | Sbjct 1042 AAGAGTTCATACCCGTCATCGAAGAGGTTTATAGTAGCCTCGTTGAGATAACT-AAATG- 1099 Query 1096 TATCAAAGGTGCAAAAGTAGAGAACCACAAGTTCTGTGCATCTGTACATTACCGTAACGT 1155 |||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| || Sbjct 1100 TATCAAAGGTGCAAAAGTGGAGAACCACAAGTTCTGCACCTCTGTACATTACCGTAATGT 1159 Query 1156 TGACGAAAAGGATTGGCCTATTA-TTGCTCAGCGTGTTCATGACCACTTGAA-ACAATAC 1213 ||| || ||||| ||||| | | ||||||| |||||||||||||||||||| | ||||| Sbjct 1160 TGATGAGAAGGACTGGCC-ACTCGTTGCTCAACGTGTTCATGACCACTTGAAGA-AATAC 1217 Query 1214 CCTCGTTTGCGTCTAACTCATGGGAGGAAGGTTTTAGAGGTTCGTCCTGTGATAGACTGG 1273 |||||| ||||||| ||||| || || ||||||||||||||||| |||||||| || ||| Sbjct 1218 CCTCGTCTGCGTCTTACTCACGGAAGAAAGGTTTTAGAGGTTCGCCCTGTGATCGAGTGG 1277 Query 1274 AACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATCTCTCGGATTAAGCAATAAAGACGAT 1333 |||||||||| ||| ||||||||||| ||||| ||||||||||||||||| || || || Sbjct 1278 AACAAAGGAAAAGCAGTCGAGTTTCTGTTAGAGTCTCTCGGATTAAGCAACAACGATGAG 1337 Query 1334 TTGCTTCCTATCTACATTGGTGATGACACA-ACCGATGAAGATGCGTTCAAGGTACTGAG 1392 || || || |||| |||||| ||||||| | ||||||||||| || |||||||||||||| Sbjct 1338 TTCCTCCCAATCTTCATTGGAGATGACA-AGACCGATGAAGACGCATTCAAGGTACTGAG 1396 Query 1393 AGATGGGAACCGAGG-TTTCGGCATCCTAGTATCGTCTATACCGAAAGAAAGCAATGCGT 1451 || |||||| |||| ||| || || | ||||||||| |||| |||||||||||||| | Sbjct 1397 GGAAGGGAACAGAGGATTT-GGAATATTGGTATCGTCTGTACCAAAAGAAAGCAATGCAT 1455 Query 1452 TTTACTCCCTTAGAGATCCATCCGAGGTGAAGAAGTTTCTAAAGACTTTGGTGAAATGGG 1511 | ||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 1456 TCTACTCTCTTAGAGACCCTTCCGAGGTGAAGAAGTTTCTCAAGACTTTGGTGAAATGGG 1515 Query 1512 CAAAGTTGGAGAAGAATTCTACTGGTTTTTGA 1543 ||| |||| || | | |||| |||||||| Sbjct 1516 GGAAGGTGGA-AA-ACT-CTACAAGTTTTTGA 1544 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66277026300 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5