BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12432.1
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490048 jgi|Araly1|490048|fgenesh2_kg.6__3182__AT4G12432.1 2228 0.0
Ahg492609 jgi|Araly1|492609|fgenesh2_kg.7__2042__AT4G22592.1 944 0.0
> Ahg490048 jgi|Araly1|490048|fgenesh2_kg.6__3182__AT4G12432.1
Length=1692
Score = 2228 bits (1206), Expect = 0.0
Identities = 1470/1591 (92%), Gaps = 43/1591 (3%)
Strand=Plus/Plus
Query 1 TTTCTTCTCTTCCTCCTACATTCTCGACTCTCTCTTTTTATTAGGGTTTTCAATTT---T 57
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1 TTTCTTCTCTTCCTCCTACATTCTCGACTCTCTC--TTTATTAGGGTTTTCAATTTCAAT 58
Query 58 --AATC--aaaaaaaaaCCCTCAAATCTCATTTTTGGA--TTTGGTTTCTTCTGCGATCT 111
|| | ||||||||| |||||||| ||| |||| || ||| |||||| ||||||||
Sbjct 59 CAAAACAAAAAAAAAAAACCTCAAATTTCAATTTTAGATTTTTTTTTTCTTTTGCGATCT 118
Query 112 CTGAGATTCAATTTCTTCTATCAAAGGAAACAAAAAACTTCATCTTTCCGAAGAtttttt 171
||||||||| |||||||| ||||||||||| ||||| ||||||||||| | ||| |||||
Sbjct 119 CTGAGATTC-ATTTCTTCGATCAAAGGAAATAAAAATCTTCATCTTTCTGGAGA-TTTTT 176
Query 172 ttCCTTCCTTCTGGAGCTCTTTTGAATCAGGTGAATTTCTAATTGAATCTGAAAGTTTAC 231
|||||||||| |||||||||||||||||||| ||||||| |||||||||||||| | |||
Sbjct 177 TTCCTTCCTTTTGGAGCTCTTTTGAATCAGGGGAATTTCAAATTGAATCTGAAAATATAC 236
Query 232 GATGAACAATTTGATATGATGATAAGTTTTGTTTGATGGAGCTTTCACCAACAAGCAGTG 291
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 237 GATGAACAATTGGAGATGATAATAAGTTTTGTTTGATGGAGCTTTCACCAACAAGCAGTG 296
Query 292 ACAAGAAAACAATGAAGAGATGGTTTTTCATAGATAAACGAGTTGGATAGAGTGTTATTG 351
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 297 ACAAGAAAACAATGAAGAGATGGTTTTTCATAGATAAACGAGTTGGATAAAGTGTTTTTG 356
Query 352 AAGATAAA-GAAAGCAAAAAACAGAAGTTCTTGCATTGAAGCATTGGTTTTAGAGTTTAT 410
|||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 357 AAGATAAACAAAAGC-AAAAATAGAAGTTCTTGCATTGAAGCATTGTTTTTAGAGTTTAT 415
Query 411 TGAAGCATTGTTTAGAGTTTTGATTAATGGA-TTTAAACTCAAACCACAAATCCTCTGTT 469
| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct 416 TAAAGCATTGTTTAGAGTTTTGATTAATGGAGTTT-AACTCAAACCACGAATCCTCTGTT 474
Query 470 CTTAAAGATCCTTCACCATCAGTTAACCAATCAAGACTCGGCGTGTCTAGTAGATTTATG 529
| | || | ||| |||| | | ||| || | | | |||||| |||
Sbjct 475 C-TCAA-A----TCATCATC---T-A--AAT--TGA--C-AC----C---TAGATTCATG 510
Query 530 ATGAGTCAATGGAAGAAACCTGCGAAACTCGATGATGTTAGATCCAATGGTTGGTTAGAT 589
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 511 ATGACTCAATGGAAGAAACCTGCGAAACTCGATGATGTTAGATCTAATGGTTGGTTAGAT 570
Query 590 GCAATGATTTCATCTTCTCCACCGCGTAAGAAGCTT-GTCAAAGATTTTAATGTTGAAGT 648
||||||||||||||||||||||||||||| ||| || || |||||||| ||||| || ||
Sbjct 571 GCAATGATTTCATCTTCTCCACCGCGTAAAAAG-TTCGTTAAAGATTTCAATGTCGAGGT 629
Query 649 TGCTCCTGAAGATGATTTTGCTCAACGTGCTTGGATGGTGAAATATCCTTCGGCGATTAG 708
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 630 TGCTCCTGAAGATGATTTTGCTCAACGTGCTTGGATGGTGAAGTATCCTTCAGCGATTAC 689
Query 709 CTCGTTTGCGCATATTGCAGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTA 768
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 690 CTCGTTTGCGCATATTGCAGCTCAAGCAAAGAAGAAGAAGATTGCTGTATTTTTAGATTA 749
Query 769 TGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAAT 828
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 750 TGATGGAACTCTTTCTCCTATAGTTGATGATCCTGATCGTGCCATTATGTCTGATGCAAT 809
Query 829 GCGTTCTGCGGTTAAAGATGTCGCGAGTTACTTCCCAACCGCAATAATTAGCGGTAGAAG 888
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 810 GCGTTCCGCGGTTAAAGATGTCGCGAGTTATTTCCCAACCGCAATAATTAGCGGTAGAAG 869
Query 889 CCGTGACAAGGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGG 948
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 870 CCGTGACAAGGTTTATCAGTTGGTAGGACTAACAGAACTCTATTACGCGGGTAGTCATGG 929
Query 949 AATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTGACCAACAGGG 1008
|||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 930 AATGGACATAATGACTTCTTCTGATGATACGAATTGTTTCAAATCTACTGACCAACAGGG 989
Query 1009 TAAGGAAGTGAATCTGTTTCAGCCCGCGAGAGAATTCATACCGGTTATCGACGAGGTTTT 1068
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 990 TAAGGAAGTGAATCTGTTTCAGCCCGCTAGAGAATTCATACCGGTAATCGACGAGGTTTT 1049
Query 1069 TAGAACCCTTGTTGAGAAAATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTT 1128
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 CAGAACCCTTGTTGAGAATATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTT 1109
Query 1129 CTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGGATTGGCCTATTATTGCTCAGCG 1188
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1110 CTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGGATTGGCCAATTATTGCTCAACG 1169
Query 1189 TGTTCATGACCACTTGAAACAATACCCTCGTTTGCGTCTAACTCATGGGAGGAAGGTTTT 1248
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1170 TGTTCATGACCACTTGAAACAATACCCTCGTCTGCGGCTAACTCATGGGAGGAAGGTTTT 1229
Query 1249 AGAGGTTCGTCCTGTGATAGACTGGAACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATC 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 AGAGGTTCGTCCTGTGATAGACTGGAACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATC 1289
Query 1309 TCTCGGATTAAGCAATAAAGACGATTTGCTTCCTATCTACATTGGTGATGACACAACCGA 1368
||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1290 TCTTGGATTAAGCAACAAAGACGATTTGCTCCCCATCTACATTGGAGATGACACAACCGA 1349
Query 1369 TGAAGATGCGTTCAAGGTACTGAGAGATGGGAACCGAGGTTTCGGCATCCTAGTATCGTC 1428
||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1350 TGAAGATGCATTCAAGGTACTGAGAGATGGGAACCGAGGTTTCGGTATCTTAGTATCGTC 1409
Query 1429 TATACCGAAAGAAAGCAATGCGTTTTACTCCCTTAGAGATCCATCCGAGGTGAAGAAGTT 1488
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1410 TATACATAAAGAAAGCAATGCGTTTTACTCCCTTAGAGATCCATCAGAGGTGAAGAAGTT 1469
Query 1489 TCTAAAGACTTTGGTGAAATGGGCAAAGTTGGAGAAGAATTCTACTGGTTTTTGAATAAT 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 TCTAAAGACTTTGGTGAAATGGGCAAAGTTGGAGAAGAATTCTACTGGTTTTTGAATAAT 1529
Query 1549 ATAGTGGAATTTTATGATTAAATGCTTATTT 1579
|||||||||||| |||| ||||||| |||
Sbjct 1530 ATAGTGGAATTTGCTGATCGAATGCTTGTTT 1560
Score = 213 bits (115), Expect = 4e-54
Identities = 130/137 (95%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 1622 GTTTTAGTCACAGCTTAATTTATGATTTTCCATTTATCTGGTGGAAGTTAAGTTATTAAA 1681
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1557 GTTTTAGTCACAGCTTAATTTATGATTTTCCATTTATCTGGTGGAAATTAAGTTATTAAA 1616
Query 1682 GTTACATGTAAAAGGAATGTTAACGTATTGCATAGTTTTGCCAAAAGACTTTTTCCTTGG 1741
|||| ||||||||| |||||||| ||||||||||||||||||||| ||| ||||||||||
Sbjct 1617 GTTATATGTAAAAG-AATGTTAATGTATTGCATAGTTTTGCCAAATGACCTTTTCCTTGG 1675
Query 1742 AGCTCAACTGTTATTAA 1758
| |||||||||||||||
Sbjct 1676 AACTCAACTGTTATTAA 1692
> Ahg492609 jgi|Araly1|492609|fgenesh2_kg.7__2042__AT4G22592.1
Length=1670
Score = 944 bits (511), Expect = 0.0
Identities = 879/1052 (84%), Gaps = 43/1052 (4%)
Strand=Plus/Plus
Query 521 AGATTTATGATG-AGTCAATGGAAGAA-ACCTGCGAAACTCGATGATGTTAGATCCAATG 578
||||| |||||| | || | ||||||| | | | |||||||||||||||||||| || |
Sbjct 507 AGATTCATGATGAATTCTA-GGAAGAAGA-TTCCTAAACTCGATGATGTTAGATCTAACG 564
Query 579 GTTGGTTAGATGCAATGATTTCATCTTCTCCACCGCGTAAGAA-GCTTGTCAAAGATTTT 637
||||||| ||||| ||||| || || || ||||||||||| || ||||||||| |||||
Sbjct 565 GTTGGTTGGATGCGATGATATCCTCGTCCCCACCGCGTAA-AAGGCTTGTCAAGGATTTC 623
Query 638 AATGTTGAAG-TTGCTCCTGAAGATGATTTTGCTCAACGTGCTTGGATGGTGAAATATCC 696
|| ||| || |||||||||||||||| ||||||||||| || |||||| | || |||||
Sbjct 624 AACATTG-AGATTGCTCCTGAAGATGACTTTGCTCAACGGGCCTGGATGCTCAAGTATCC 682
Query 697 TTCGGCGATTAGCTCGTTTGCGCATATTGCAGCTCAAGCAAAGAAGAAAAAGATTGCTGT 756
||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 683 TTCAGCGATTACCTCGTTTGCGCATATTGCAGCTCAAGCAAAGAACAAGAAGATAGCTGT 742
Query 757 ATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCAT 816
||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 743 GTTTCTAGATTATGATGGAACGCTTTCCCCAATCGTTGATGACCCTGATCGCGCCATCAT 802
Query 817 GTCTGATGCAATGCGTTCTGCGGTTAAAGATGTCGCGA-GTTACTTCCCAACCGCAATAA 875
||||||||| |||||| |||| || ||||||||||| | || |||||||||| |||||||
Sbjct 803 GTCTGATGCGATGCGTGCTGCTGTGAAAGATGTCGCCAAGT-ACTTCCCAACAGCAATAA 861
Query 876 TTAGCGGTAGAAGCCGTGACAAGGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACG 935
|||| |||||||||||||||||||| || || |||||||||||||| ||||| || ||||
Sbjct 862 TTAGTGGTAGAAGCCGTGACAAGGTATACCAATTGGTAGGACTAACCGAACTCTACTACG 921
Query 936 CGGGTAGTCATGGAATGGACATAATGACTTCT-TC--TG-A--TGG-TC-C--GAA---- 981
|||||||||| || |||||||||||||| || | | | ||| || | |||
Sbjct 922 CGGGTAGTCACGGGATGGACATAATGACCCCTGTAAATCCACATGGGTCTCCTGAAGACC 981
Query 982 ----TTGTTTCAAATCCACTGACCAACAGGGTAAGGAAGTGAATCTGTTTCAGCCCGCGA 1037
|||| | ||||| ||||||||||||||| |||| || || || |||||||| || |
Sbjct 982 CCAATTGTATAAAATCTACTGACCAACAGGGTGAGGAGGTAAACCTCTTTCAGCCTGCTA 1041
Query 1038 GAGAATTCATACCGGTTATCGACGAGGTTTTTAGAACCCTTGTTGAGAAAA-TGAAA-GA 1095
||| |||||||| || ||||| ||||||| ||| | ||| ||||||| || | ||| |
Sbjct 1042 AAGAGTTCATACCCGTCATCGAAGAGGTTTATAGTAGCCTCGTTGAGATAACT-AAATG- 1099
Query 1096 TATCAAAGGTGCAAAAGTAGAGAACCACAAGTTCTGTGCATCTGTACATTACCGTAACGT 1155
|||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| ||
Sbjct 1100 TATCAAAGGTGCAAAAGTGGAGAACCACAAGTTCTGCACCTCTGTACATTACCGTAATGT 1159
Query 1156 TGACGAAAAGGATTGGCCTATTA-TTGCTCAGCGTGTTCATGACCACTTGAA-ACAATAC 1213
||| || ||||| ||||| | | ||||||| |||||||||||||||||||| | |||||
Sbjct 1160 TGATGAGAAGGACTGGCC-ACTCGTTGCTCAACGTGTTCATGACCACTTGAAGA-AATAC 1217
Query 1214 CCTCGTTTGCGTCTAACTCATGGGAGGAAGGTTTTAGAGGTTCGTCCTGTGATAGACTGG 1273
|||||| ||||||| ||||| || || ||||||||||||||||| |||||||| || |||
Sbjct 1218 CCTCGTCTGCGTCTTACTCACGGAAGAAAGGTTTTAGAGGTTCGCCCTGTGATCGAGTGG 1277
Query 1274 AACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATCTCTCGGATTAAGCAATAAAGACGAT 1333
|||||||||| ||| ||||||||||| ||||| ||||||||||||||||| || || ||
Sbjct 1278 AACAAAGGAAAAGCAGTCGAGTTTCTGTTAGAGTCTCTCGGATTAAGCAACAACGATGAG 1337
Query 1334 TTGCTTCCTATCTACATTGGTGATGACACA-ACCGATGAAGATGCGTTCAAGGTACTGAG 1392
|| || || |||| |||||| ||||||| | ||||||||||| || ||||||||||||||
Sbjct 1338 TTCCTCCCAATCTTCATTGGAGATGACA-AGACCGATGAAGACGCATTCAAGGTACTGAG 1396
Query 1393 AGATGGGAACCGAGG-TTTCGGCATCCTAGTATCGTCTATACCGAAAGAAAGCAATGCGT 1451
|| |||||| |||| ||| || || | ||||||||| |||| |||||||||||||| |
Sbjct 1397 GGAAGGGAACAGAGGATTT-GGAATATTGGTATCGTCTGTACCAAAAGAAAGCAATGCAT 1455
Query 1452 TTTACTCCCTTAGAGATCCATCCGAGGTGAAGAAGTTTCTAAAGACTTTGGTGAAATGGG 1511
| ||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1456 TCTACTCTCTTAGAGACCCTTCCGAGGTGAAGAAGTTTCTCAAGACTTTGGTGAAATGGG 1515
Query 1512 CAAAGTTGGAGAAGAATTCTACTGGTTTTTGA 1543
||| |||| || | | |||| ||||||||
Sbjct 1516 GGAAGGTGGA-AA-ACT-CTACAAGTTTTTGA 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66277026300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5