BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12450.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490049 jgi|Araly1|490049|fgenesh2_kg.6__3183__AT4G12450.1 1210 0.0
> Ahg490049 jgi|Araly1|490049|fgenesh2_kg.6__3183__AT4G12450.1
Length=923
Score = 1210 bits (655), Expect = 0.0
Identities = 796/864 (92%), Gaps = 10/864 (1%)
Strand=Plus/Plus
Query 133 AAATATGCCGATCGGGTGGGTCAAATCCTTACATTGCAAATCAAAAGCATTCGACGATGT 192
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 65 AAATATGCCAATCGGGTGGGTCAAATCCTTACATTGCAAATCAAGAGCATTCGACGATGT 124
Query 193 CTATCATCATCACTCCAACAAAGGTAAACTCTTATTGCCAAGTTACAGCTGCAGAAAAAA 252
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 125 TTATCATCATCACTCCAACAACGGTAAACTCTTATTGCCAAGTTACAGCTGCAGAAAAAA 184
Query 253 CGTTAGAGACGTTGTCAATACACA-ACCCGGAACCGTTAAGAAAAA-CCCAAAACCGGAC 310
|||||||||||| || ||| || ||||||||||||||| ||||| ||||||||| |||
Sbjct 185 CGTTAGAGACGTCGTTGATA-ACCGACCCGGAACCGTTAA-AAAAAGCCCAAAACCCGAC 242
Query 311 CCGAG-TTTAAGACGTTTATGCTCTTCTCGTCGACCCGAATTAGACTCCAATTCTCATCA 369
||| | |||| |||||||| |||||||| |||||||||||| ||| ||||||||||||||
Sbjct 243 CCG-GCTTTACGACGTTTACGCTCTTCTAGTCGACCCGAATCAGAATCCAATTCTCATCA 301
Query 370 CCCGACCCGACGAAGTGTATCAGCTCGAGCTTCCTCGGAATCTGTATTGCCCGTATTGAC 429
|||| ||||| |||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 302 CCCGGCCCGAAGAAGCGTATCAGCTCGAGCTTCCTCTGAATCAACATTGCCCGTATTGAC 361
Query 430 CGATCTTCCTGATGGTCATCCGTCAAGAAACGTCGTGGAGATTATATTCCAATCTAGTTG 489
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 CGATCTTCCCGACGGTCATCCGTCGAGAAACGTCGTGGAGATTATATTCCAATCTAGTTG 421
Query 490 GAGCTCCGATGAGTTTCCGGGTCGGGTTGAAATGATTTTTAAAGTTGAAAACGGGTCAAA 549
||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 422 GAGCTCCGACGAGTTTCCGGGTCGGGTAGAAATGATCTTTAAAGTCGAAAACGGGTCAAA 481
Query 550 AGCTGTGACCCGGTTTGAGGAATATAGAGAAGCTGTGAAATCGCGATCGTGTTCGAAAGT 609
|||||||||||||||||||||||||||||||| |||||||||||||| | | ||||| |
Sbjct 482 AGCTGTGACCCGGTTTGAGGAATATAGAGAAGATGTGAAATCGCGATGGCGCACGAAATT 541
Query 610 TGATTCTGATAGAG-TTGACGGCAGCGCGTGTGATGAAAACGCGCGGTGCTCCGCTGATG 668
|||||| ||| ||| || ||||| |||||||||||||| |||||||||| || |||||||
Sbjct 542 TGATTCCGAT-GAGGTTAACGGCGGCGCGTGTGATGAAGACGCGCGGTGTTCGGCTGATG 600
Query 669 GGAATGAGATGATGAGGTTTTTTCCGTTGGGTCCGATTCCGGGAGGGATAAACGGCGGCG 728
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 601 GGAATGAGATGATGAGGTTTTTTCCTTTGGGTCCTATTCCGGGAGGGATTAACGGCGGCG 660
Query 729 CGTGGGGTTTTCCC-GGAGGGAAAGGAGCGGCGGTTTGTACGTTTTCCGGTAGCGGAGAA 787
|||||||||| ||| || || |||||||||||||||||||| ||||| |||||||| |||
Sbjct 661 CGTGGGGTTT-CCCTGGTGGTAAAGGAGCGGCGGTTTGTACATTTTCGGGTAGCGGTGAA 719
Query 788 GCGCACGCGAGCACTGGCGGCGGAGGAGGGAGGAGAGCGATGTTGATTTGTAGAGTGATT 847
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 GCGCATGCGAGCACAGGCGGCGGAGGAGGGAGGAGAGCGATGTTGATTTGTAGAGTAATT 779
Query 848 GCGGGTCGGGTTGCGAAGAAAGGTGAATTCGGGTCGGATTCGGTAGCGGGTCGAGCTGGT 907
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 GCGGGTCGGGTTGCGAAGAAAGGTGAATTCGGGTCGGATTCAGTAGCGGGTCGAGCTGGT 839
Query 908 GAGTTGATTGTCTTTGATGCTCGCGCGGTGTTGCCTTGTTTCTTAATCTTTTTCAGATTG 967
|||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 840 GAGTTGATTGTCTTCGATGCACGCGCCGTGTTGCCTTGTTTCTTAATATTTTTCAGATTG 899
Query 968 TAAAAAATAATAATTATTATAAAA 991
|||||||| || ||||||||||||
Sbjct 900 TAAAAAATTATTATTATTATAAAA 923
Score = 78.7 bits (42), Expect = 8e-14
Identities = 62/70 (89%), Gaps = 7/70 (10%)
Strand=Plus/Plus
Query 30 TACACCAAAAACTTCAAAGCCCCCACAAATCTCTAAACATATCACAAACTTCAAATTTCT 89
||||||||||||||||||||||||||||||||||||||| | || || ||||||||
Sbjct 3 TACACCAAAAACTTCAAAGCCCCCACAAATCTCTAAACA-A--ACT---TT-AAATTTCT 55
Query 90 AAAGACACAA 99
||||||||||
Sbjct 56 AAAGACACAA 65
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5