BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12460.1
Length=2658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490050 jgi|Araly1|490050|fgenesh2_kg.6__3184__AT4G12460.1 3077 0.0
> Ahg490050 jgi|Araly1|490050|fgenesh2_kg.6__3184__AT4G12460.1
Length=2548
Score = 3077 bits (1666), Expect = 0.0
Identities = 1947/2081 (94%), Gaps = 25/2081 (1%)
Strand=Plus/Plus
Query 584 GCATAGTTCCTCTCCAGTCAATTAATGGGGATTTCTCCTTCGTATCACCAAAGGATTTAT 643
|||| ||||||||||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct 487 GCAT-GTTCCTCTCCAGTCAATCAGTGGGGA-GTCTCCTTCGTATCACCAAAGGATTTAT 544
Query 644 CCATATCTACCGAGAGACTAAAGAAACGGTTGTTTGAAGAGGGAATGAACGAGAGTCTTG 703
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 545 TCATATCTACAGAGAGACTAAAGAAACGGTTGCTTGAAGAGGGAATGAACGAGAGTCTTG 604
Query 704 TAAAAGAGTGCGAGCAGATCGTGGATTCAGAGTTCTGTGAAGTTCAAGAACAGATTAAAC 763
||| |||||| || |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 605 TAACAGAGTGTGAACAGATCGTGGATTCAGAGTTCTCTGAAGCTCAAGAACAGATTAAAC 664
Query 764 TTCTTCACGAAGAGCGGAAAAAGTTGCTTGATGCTTTGAGGCAGCTAGAGATGGCCAACC 823
|||| || ||||| |||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 665 TTCTCCATGAAGAACGGACAAAGTTGCTTGATGCATTGAGGCAGCTAGAGATGGCCAACC 724
Query 824 TTGAAGCTGAAGCCTCAGGGATCCATGACGATGTCTACCAATTAAGAAATCACAAGTATT 883
||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 725 TTGAAGCTGAAACCTCAGGGATCCATGACAATGTCTACCAATTAAGAAATCATAAGTATT 784
Query 884 CCAGCTTAGGACGTGGAAAATATAGTGAATGCAGTACAAGTGCTTCATCTGATGATAAGC 943
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 785 CCAGCTTAGGACGTGGAAAATATAGTGAATGCAGTACAAGTGCTTCATCTGCTGATAAGC 844
Query 944 AAGAGTTTGAGGATATCTCTGAGGAAGACGAGGCTTCCTTCCATGACACAAAGGAGTCAT 1003
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 845 AAGAGTTTGAGGATATCTCTGAGGAAGATGAGGCTTCTTTCCATGACACAAAGGAGTCAT 904
Query 1004 TTGGTGAACCTGATGTTGGTTCTGTGCT-CACGCATTTTAAGAGACGAACAAAGCTTCCT 1062
|| ||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||
Sbjct 905 TTAGTGAACCTGATGTTGGTTCTGTG-TACACACATTTCAAGAGACGAACAAAGCTTCCT 963
Query 1063 GATCCAGCAGAGAAAGAGAGAGGTGTCAGTCTCTGGTCTATGATCAAAGACAATGTTGGA 1122
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 964 GATCCAGCAGAGAAAGAGAGAGGTGTCAGTCTCTGGTCTATGATCAAAGATAATGTTGGA 1023
Query 1123 AAGGATCTCACACGAGTTTGTCTTCCTGTTTATTTCAATGAACCAATATCTTCCCTCCAA 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 AAGGATCTCACACGAGTTTGTCTTCCTGTTTATTTCAATGAACCAATATCTTCCCTCCAA 1083
Query 1183 AAGTGTTTTGAAGACTTGGAGTACTCTTATCTCTTGGACCAAGCATATGAATACGGAAAA 1242
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1084 AAGTGTTTTGAAGACTTGGAGTACTCTTATCTCTTGGACCAAGCATATGAATGCGGAAAA 1143
Query 1243 TCCGGGAAGAGTCTCCTTAGAGCCCTCAATGTCGCTGCTTTTGCAGTCTCTGGTTATGCT 1302
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1144 TCCGGGAACAGTCTCCTTAGAGCCCTGAATGTCGCTGCTTTTGCGGTCTCTGGTTATGCT 1203
Query 1303 TCCACCGAAGGACGACACTGTAAACCTTTCAACCCTTTGCTCGGAGAAACATATGAAGCT 1362
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1204 TCCACCGAAGGACGACACTGTAAACCTTTCAACCCTTTACTTGGAGAAACTTATGAAGCT 1263
Query 1363 GACTTTCCTGAAAAGGGAATTCGTTTCTTCTCTGAGAAGGTTAGCCACCATCCAACAGTT 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GACTTTCCTGAAAAGGGAATTCGTTTCTTCTCTGAGAAGGTTAGCCACCATCCAACAGTT 1323
Query 1423 ATCGCCTGCCATTGCGAAGGTAAAGGGTGGAAGTTCTGGGGCGACACAAACCTCCGGTCG 1482
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1324 ATCGCCTGCCATTGTAAAGGTAAAGGGTGGAAGTTCTGGGGCGACACAAACCTCAGGTCG 1383
Query 1483 AAGTTTTGGGGGAGATCGATCCAACTTGAACCCGTTGGAATCTTGACTCTCGAGTTTGAT 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AAGTTTTGGGGGAGATCGATCCAACTTGAACCCGTTGGAATCTTGACTCTCGAGTTTGAT 1443
Query 1543 GATGGAGAAATTTTCCAGTGGAGCAAAGTAACAACAACTATATACAATATCCTACTTGGT 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 GATGGAGAAATTTTCCAGTGGAGCAAAGTAACAACAACTATATACAATATCCTACTTGGT 1503
Query 1603 AAACTGTACTGCGATCACCATGGGATAATGAAAATCCGTGGAAATCGCCAATATTCTTGT 1662
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1504 AAACTGTACTGCGATCACCATGGGATAATGCAAATCCGTGGAAATTGCCAATATTCTTGT 1563
Query 1663 A-TGTTAAAGTTCAAGGAGCAATCGATTCTTGATAGAAATCCCCACCAGGTTAATGGTTT 1721
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 ACT-TTAAAGTTCAAGGAGCAATCGATTCTTGATAGAAATCCCCACCAGGTTAATGGTTT 1622
Query 1722 TGTAGAAGATGTAACTGGAAAAAAGGCTGCGACGGTATTTGGTAAATGGAATGATAGCCT 1781
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||
Sbjct 1623 TGTAGAAGATGTAACTGGGAAAAAGGCCGCAACGGTATTTGGTAAATGGAATGATAGTCT 1682
Query 1782 TTATTATGTTGCTGGTGATGGAATCAACAAGGCAAGCGCCTCATTACTGTGGAAAGCGAC 1841
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1683 TTACTATGTTGCTGGTGATGGACTCAACAAGGCAAGCGCCTCATTACTGTGGAAAGCGAC 1742
Query 1842 AAAGGCACCACCTAATGTCACCAGATACAACTTTACATCATTCGCGATGACGCTAAATGA 1901
||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1743 TAAGCCACCACCTAATGTCACTAGATACAACTTAACATCATTCGCGATGACGCTAAATGA 1802
Query 1902 ATTGATACCTGGTTTGGAGGAAAAGCTGCCTCCAACAGATTCTAGGCTCCGACCAGATCA 1961
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1803 ATTGACACCTGGTTTGGAGGAAAAGTTGCCTCCAACAGATTCTAGGCTCCGACCAGATCA 1862
Query 1962 ACGACACTTGGAGAACGGTGAATATGAGAAGGCAAATGAAGAGAAACAAAGATTAGAGAG 2021
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1863 ACGGCACTTGGAGAACGGTGAATATGAGAAGGCAAATGAAGAGAAACAACGATTAGAGAG 1922
Query 2022 AAGACAAAGAATGTCACGGCAAATTCAGGAAAGTGGGTGGAGACCGAGATGGTTCGAGCC 2081
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1923 AAGACAAAGAATGTCACGGCAAATTCAGGAAAGCGGGTGGAGACCGAGATGGTTCGAGCC 1982
Query 2082 TCAAGGAGAGAGTGAAAGCTATAAGTATACGGGCGGTTATTGGGAAGCACGAGATGTTAA 2141
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1983 ACAAGGAGAGAGTGAAAGCTATAAGTACACGGGCGGTTATTGGGAAGCACGAGATGATAA 2042
Query 2142 AAGTTGGGATGATTGCCCTAACATATTTGGAGAGTTCACCGAAGAGGTTGCAGATTGTGC 2201
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2043 AAGTTGGGATGATTGCCCTAACATATTTGGAGAGTTCACCGAGGAGGTTGCAGATTGTGC 2102
Query 2202 TTAAGCCGAGGTATTATAATATATCAAAAGTTGTGATATTCGTCAAGTGGTTGATACCCG 2261
|||||||||| |||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 2103 TTAAGCCGAGATATTCTGGTATATCAAAAGTTGTGATGTTCGTCAAGTGGTTGATACCCT 2162
Query 2262 CAAGTAACTATAGAATCTTGATCACCCGATCGATCCGTGAATCAGCTCAAGATAATGGTT 2321
|||| |||||||| ||||||||||| |||||||||| ||||||||||| |||| | || |
Sbjct 2163 CAAGAAACTATAGCATCTTGATCACTCGATCGATCCATGAATCAGCTCTAGATTACGGAT 2222
Query 2322 ACAACTGGGATCTAAGATTATTATGGTTCATGGCTAAGGAGGAACGTGAGCCT-TCTGCC 2380
||| ||||||||||| ||| |||| |||| || |||||||||| |||||| || ||
Sbjct 2223 ACATCTGGGATCTAACATTGTTATCTTTCAGGGGTAAGGAGGAATTTGAGCCGGTCCGCT 2282
Query 2381 CCCTAGGGATTGAT-TCTCGATAGTGAACAGAGCTTTCTTTTGGTTTGAATTTTCTGTTT 2439
||||||||||| | |||||| | || |||||||||||||| ||||||| ||||||||||
Sbjct 2283 CCCTAGGGATTT-TGTCTCGACAATGGACAGAGCTTTCTTTCGGTTTGAGTTTTCTGTTT 2341
Query 2440 ATTTAAACTCCGGAGATCAGAAGATGATAGATATATTCTTTTTCAGTTCTTTTGTAGTAA 2499
|| |||||||||||||| |||| | || |||||||| |||||||||||||||||| |||
Sbjct 2342 ATCTAAACTCCGGAGAT-AGAA-A-GAG-GATATATTATTTTTCAGTTCTTTTGTAATAA 2397
Query 2500 TG-TTTCTGCTATAGCTTCAAAAGATGGTCCGATAAAGAGAATTTAAAGAGCCTCACTGT 2558
|| ||| |||||||||||||| || ||||| | ||||||| |||| ||||| ||| |||
Sbjct 2398 TGGTTT-TGCTATAGCTTCAAGAG--GGTCCTAAAAAGAGAGTTTATAGAGCTTCAATGT 2454
Query 2559 AAAGGTCACTGAGAGAAATGCAAC-TCGGTTCCAACATTTGGACAAATATTATTTGTGAT 2617
||||||| |||||||||||| | | |||||||||||||||||||||||| |||| ||
Sbjct 2455 AAAGGTCTCTGAGAGAAATGTAGTGT-GGTTCCAACATTTGGACAAATATTCGTTGTAAT 2513
Query 2618 CTATTTGTATTAATTCAATACAAAGGAAGCGATTGAAATTT 2658
|||||| | | | ||| ||||||||||| ||||||||||
Sbjct 2514 CTATTT-TGT-A---CAA-ACAAAGGAAGCAATTGAAATTT 2548
Score = 664 bits (359), Expect = 0.0
Identities = 444/482 (92%), Gaps = 17/482 (4%)
Strand=Plus/Plus
Query 77 TTATCACTTCTTTAGTAGC-TCTCAACGAGATTTCTCCAAAATCAGCGATGCCTTTAACG 135
||||| ||||||||||| | |||| ||||||||||||| ||||| | |||||||||||||
Sbjct 26 TTATCGCTTCTTTAGTA-CTTCTCGACGAGATTTCTCCGAAATCGGTGATGCCTTTAACG 84
Query 136 AGATCAAAGAGTCTTCCGGCGACGGAGAACGGTGGATCCGATCGGGAGACACTCCAATCA 195
|| ||||||||||| |||||||||||||||||||||| | | | | | ||
Sbjct 85 AGGTCAAAGAGTCTGCCGGCGACGGAGAACGGTGGAT-C---C----G--A-T----TCG 129
Query 196 GGAAGATCAGTGGCTGGGATTCTCTATAAATGGACTAATTACGGAAAAGGATGGAGATCT 255
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 130 GGAAGATCAGTGGCTGGGATTCTCTATAAATGGACTAATTATGGAAAAGGATGGAGATCT 189
Query 256 AGATGGTTCCTCCTCCGCGACGGAATCTTATCGTATTCCAAGATCCGAAGACCGGAGAAT 315
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 190 AGATGGTTCCTCCTCCGCGATGGAATCTTATCGTATTCCAAAATCCGAAGACCGGAGAAT 249
Query 316 GTCAATCTCTTATCTCCTTCCGATGATCTGAGGTTAATCGGAGATATTTCCACCGATCGT 375
|| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 250 GTGAATCTGTTATCTCCTTCCGATGATGTGAGGTTAATCGGAGATATCTCCACCGATCGT 309
Query 376 CTCTTGAGAATGAAGAGTTGTAGTGGCCGTAGTCGTCGGAAACATCACAAAAACATTGGC 435
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 310 TTCTCGAGAATGAAGAGTTGTAGTGGCCGTAGTCGTCGGAAACATCACAAAACCATCGGC 369
Query 436 ATTGTTCATCTCAAGGTTTCATCTTACCGAGAAAGCAAGTCTGATCATAGAAAGTTTTAT 495
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 370 ATTGTTCATCTCAAGGTTTCATCTTACAGAGAAAGCAAATCTGATCATAGAAAGTTTTAT 429
Query 496 ATCTTTACTGCAACCAAGACTCTGCATCTGAGGACTGATTCTAGAAGTGATAGAGCAGCA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ATCTTTACTGCAACCAAGACTCTGCATCTGAGGACTGATTCTAGAAGTGATAGAGCAGCA 489
Query 556 TG 557
||
Sbjct 490 TG 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100253524840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5