BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12470.1
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1 616 1e-175
Ahg943163 jgi|Araly1|943163|scaffold_603707.1 420 9e-117
Ahg943161 jgi|Araly1|943161|scaffold_603705.1 381 4e-105
> Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1
Length=679
Score = 616 bits (333), Expect = 1e-175
Identities = 521/605 (86%), Gaps = 39/605 (6%)
Strand=Plus/Plus
Query 45 aaaaCAAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCTCAACATCCT 104
|||| |||||||||||||||||||||||||| ||||||||||||| || ||| |||||||
Sbjct 3 AAAA-AAATGGCTTCAAAGAACTCAGCCTCTATTGCTCTTTTCTTCGCCCTCGACATCCT 61
Query 105 CTTTTTCACCTTAACCGTTGCAAC--A----AATTG----CA-A---CT--G--C-AA-- 143
|| ||||||||||| | |||||| | ||| || | || | | ||
Sbjct 62 ATTCTTCACCTTAACTGCTGCAACTGATTGTGGTTGCAACCAGAGTCCTAAGCACAAACC 121
Query 144 -G--CCAAGTCCTAAACCAAAGCCAGTCCCAAGTCCTAAGCCCAAGCCGGT-CCAATGTC 199
| || ||||||||||| |||||||||||||||||||| ||||||||||| |||| |||
Sbjct 122 GGTCCCTAGTCCTAAACCCAAGCCAGTCCCAAGTCCTAAACCCAAGCCGGTCCCAA-GTC 180
Query 200 C-TC-CTCCACCCCGTCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCCACG 257
| || ||| | | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CTTCGGTCC-CAAC-TCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCCAAG 238
Query 258 CACCCCTGGTTCATCCGGAAACAGCTGTCCTATTGATGCTCTCAAGCTCGGTGTATGTGC 317
||||||| ||||||| |||||| || ||||| |||| |||||||||||||||||||||
Sbjct 239 CACCCCTAGTTCATCTGGAAACTGC---CCTATAGATGTTCTCAAGCTCGGTGTATGTGC 295
Query 318 AAATGTCTTAAGCAGTCTACTCAACATCCAGTTGGGACAGCCATCCTCTCAACAATGTTG 377
||||||| ||||||||||||| |||||||||||||| |||||||| |||||| ||||||
Sbjct 296 AAATGTCCTAAGCAGTCTACTTAACATCCAGTTGGGTCAGCCATCAGCTCAACCATGTTG 355
Query 378 CTCGCTCATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTATGCACTGCTCTGAG 437
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 356 CTCGCTTATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTGTGCACTGCTCTTAG 415
Query 438 GGCTAACGTTCTTGGTATCAACCTTAACGTTCCGATATCTCTCAGCGTTCTTCTCAACGT 497
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 416 GGCTAACGTTCTTGGCATCAACCTTAACGTTCCAATATCTCTCAGCGTTCTTCTCAACGT 475
Query 498 TTGTAACAGAAAGCTTCCATCTGGTTTCCAATGTGCTTGAGCAATATCCAT-TATGCATA 556
||||||||||||| |||| ||||||||||||||||||| | | ||||| | ||||||||
Sbjct 476 TTGTAACAGAAAGGTTCCGTCTGGTTTCCAATGTGCTTAAACGATATC-AGCTATGCATA 534
Query 557 CGATGCGATGCCAGTGCACAATAT-CGTCTTCGAAATTTATTATAGTTTGAATAAATGCA 615
|||||||||||| || |||||||| | ||||| ||||| | || ||||||||||||| ||
Sbjct 535 CGATGCGATGCCCGTACACAATATAC-TCTTCAAAATT-ACTACAGTTTGAATAAATTCA 592
Query 616 TGTAA 620
|||||
Sbjct 593 TGTAA 597
Score = 84.2 bits (45), Expect = 1e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 643 TAATTTGTTAAAGAGAAAAAATAAATGTGTGAGATTTTTATAGTTTTT 690
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 TAATTTGTTAAAGATAAAAAATAAATGTGTGAGATTTTTATAGTTTTT 647
> Ahg943163 jgi|Araly1|943163|scaffold_603707.1
Length=495
Score = 420 bits (227), Expect = 9e-117
Identities = 423/511 (83%), Gaps = 39/511 (8%)
Strand=Plus/Plus
Query 37 TGaa-aaaaaaaaCAAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCT 95
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 8 TGAAGAAAAATAAC-AATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCT 66
Query 96 CAACATCCTCTTTTTCACCTTAACCGTTGCAACAAATTGCAACTGCAAGCCAAGTCCTAA 155
||||||||| |||||||||||||||||||| || |||| || ||||| ||||||||| |
Sbjct 67 CAACATCCTTTTTTTCACCTTAACCGTTGCTACTGATTGTAAATGCAACCCAAGTCCT-A 125
Query 156 ACCAAAGCCAGTCCCAAGTCCTAAGCCCAAGCCGGTCCAATGTCCTCCTCCACCCCGTCC 215
| | | |||| || || | ||||| | ||| | | | | ||| |||
Sbjct 126 AGC--A--CAGT-CCTAG-GGT---CCCAA--C--TCCTA-G-GGT-C-CCA---ATTCC 165
Query 216 TTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCC-ACGCACCCCTGGTTCATCCG 274
||| ||||||| | |||| ||||| || |||| | ||||||| || |||||
Sbjct 166 TTCGGTCCCAA---C---TCCT---TCGGTCCCAACTCCGA-GCACCCCAGGCTCATCTA 215
Query 275 GAAACAGCTGTCCTATTGATGCTCTCAAG-CTCGGTGTATGTGCAAATGTCTTAAGCAGT 333
| || | ||||||||| ||||||||| || ||||||||||||||||||||| ||||| ||
Sbjct 216 G-AA-A-CTGTCCTATCGATGCTCTC-AGACTCGGTGTATGTGCAAATGTCCTAAGCGGT 271
Query 334 CTACTCAACATCCAGTTGGGACAGCCATCCTCTCAACAATGTTGCTCGCTCATCCAAGGT 393
||||| ||| | ||||||||||||||||| |||| | ||| ||||||||||||||||||
Sbjct 272 CTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCCATGCTGCTCGCTCATCCAAGGT 331
Query 394 TTGGTTGACGTCGACGCTGCGATTTGTCTATGCACTGCTCTGAGGGCTAACGTTCTTGGT 453
||||||||| |||||||||| ||||| || ||||||||||| |||||||||||||| |||
Sbjct 332 TTGGTTGACCTCGACGCTGCCATTTGCCTCTGCACTGCTCTTAGGGCTAACGTTCTCGGT 391
Query 454 ATCAACCTTAACGTTCCGATATCTCTCAGCGTTCTTCTCAACGTTTGTAACAGAAAGCTT 513
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 392 ATCAACCTTAACGTTCCTATATCTCTCAGCGTTCTTCTCAACGTTTGTAACAGAAGGCTT 451
Query 514 CCATCTGGTTTCCAATGTGCTTGAGCAATAT 544
|| ||||| ||||||||||||||| | ||||
Sbjct 452 CCGTCTGGCTTCCAATGTGCTTGAACGATAT 482
> Ahg943161 jgi|Araly1|943161|scaffold_603705.1
Length=608
Score = 381 bits (206), Expect = 4e-105
Identities = 281/316 (89%), Gaps = 9/316 (3%)
Strand=Plus/Plus
Query 244 GTCACACCTCC-ACGCACCCCTGGTTCATCCGGAAACAGCTGTCCTATTGATGCTCTCAA 302
||||||||||| | |||||||||| |||| ||| || | |||||| || ||||||||| |
Sbjct 298 GTCACACCTCCGA-GCACCCCTGGCTCAT-CGGGAA-A-CTGTCCCATCGATGCTCTC-A 352
Query 303 G-CTCGGTGTATGTGCAAATGTCTTAAGCAGTCTACTCAACATCCAGTTGGGACAGCCAT 361
| |||||||||||||| |||||| ||||| ||||||| ||| | ||||||||||||||||
Sbjct 353 GACTCGGTGTATGTGCGAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCAT 412
Query 362 CCTCTCAACAATGTTGCTCGCTCATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTC 421
| |||| | ||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 413 CAGCTCAGCCATGCTGCTCGCTCATCCAGGGTTTGGTTGACCTCGACGCTGCGATTTGTC 472
Query 422 TATGCACTGCTCTGAGGGCTAACGTTCTTGGTATCAACCTTAACGTTCCGATATCTCTCA 481
| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 473 TCTGCACTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCCATATCTCTCA 532
Query 482 GCGTTCTTCTCAACGTTTGTAACAGAAAGCTTCCATCTGGTTTCCAATGTGCTTGAGCAA 541
||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 533 GCGTTCTTCTCAACGTTTGTAACAGAAGGCTTCCGTCTGGTTTTCAATGTGCTTGAGCGG 592
Query 542 TATC-CATTATGCATA 556
|||| | |||||||||
Sbjct 593 TATCGC-TTATGCATA 607
Score = 180 bits (97), Expect = 2e-44
Identities = 163/192 (85%), Gaps = 15/192 (8%)
Strand=Plus/Plus
Query 47 aaCAAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCTCAACATCCTCT 106
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 24 AAC-AATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCTTT 82
Query 107 TTTTCACCTTAACCGTTGCAACAAATTGCA-ACTGCAAGCCAAGTCCTAAAC-CAAAGCC 164
||||||||||||||| ||| || |||| | | ||||| ||||||||||| | ||| |||
Sbjct 83 TTTTCACCTTAACCGCTGCTACTGATTGTAGA-TGCAACCCAAGTCCTAAGCACAA-GCC 140
Query 165 -AGTCCCAAGTCCTAAGCCCAAGCCGGTCC-AATGTCCTCC--T-CCACCCCGTCCTTCA 219
| |||||||||||||||| | |||||||| || ||||| | | ||| | |||||||
Sbjct 141 GA-TCCCAAGTCCTAAGCCTAGGCCGGTCCCAA-GTCCTTCAGTTCCAAC---TCCTTCA 195
Query 220 GTCCCAAGTCCT 231
||||||| ||||
Sbjct 196 GTCCCAATTCCT 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29507137758
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5