BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12490.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943161 jgi|Araly1|943161|scaffold_603705.1 702 0.0
Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1 409 2e-113
Ahg943163 jgi|Araly1|943163|scaffold_603707.1 405 2e-112
> Ahg943161 jgi|Araly1|943161|scaffold_603705.1
Length=608
Score = 702 bits (380), Expect = 0.0
Identities = 529/599 (88%), Gaps = 18/599 (3%)
Strand=Plus/Plus
Query 2 TCTCTCACTCAAACATTCTCCATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTT 61
|||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCAAACACACTCAATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTT 60
Query 62 TTCTTTGCCCTCAACATCCtttttttCACCTTAACCGCTGGTACTAATTGTAGATGCAAC 121
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 61 TTCTTTGCCCTCAACATCCTTTTTTTCACCTTAACCGCTGCTACTGATTGTAGATGCAAC 120
Query 122 CCGAGTCCTAAGC-CTAGGCCGCTCCCAAATCCT-A----A----GGTCCCAAGTCC-TA 170
|| |||||||||| | | |||| |||||| |||| | | |||||||||||| |
Sbjct 121 CCAAGTCCTAAGCAC-AAGCCGATCCCAAGTCCTAAGCCTAGGCCGGTCCCAAGTCCTTC 179
Query 171 AGGTCCCAACTCCTTCGGTCCCAAGTCCATATGTTCCAACTCCTTCGGTCCCAAGTCCTT 230
| || ||||||||||| ||||||| ||| | |||||||||||||| ||||||| |||||
Sbjct 180 A-GTTCCAACTCCTTCAGTCCCAATTCCTTCGGTTCCAACTCCTTCAGTCCCAATTCCTT 238
Query 231 CCGTACCAACTCCTTCGGTCCCAAGTCCTTCCGTACCAAGTCCTAAC---CCTACGCCAG 287
| || ||||||||||||||||||| |||||| || |||| |||| | || || || |
Sbjct 239 CGGTCCCAACTCCTTCGGTCCCAACTCCTTCGGTCCCAAATCCTTCCGTACCAACTCCCG 298
Query 288 TCATTCCTCCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTCAGACTCG 347
||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 299 TCACACCTCCGAGCACCCCTGGCTCATCGGGAAACTGTCCCATCGATGCTCTCAGACTCG 358
Query 348 GTGTATGTGCGAATGTGCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCACCTC 407
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 GTGTATGTGCGAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTC 418
Query 408 AACCATGCTGCTCACTCATTCAAGGTTTGGTTGACCTTGACGCTGCGGTTTGCCTATGCA 467
| ||||||||||| ||||| || |||||||||||||| ||||||||| |||| || ||||
Sbjct 419 AGCCATGCTGCTCGCTCATCCAGGGTTTGGTTGACCTCGACGCTGCGATTTGTCTCTGCA 478
Query 468 CTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTC 527
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 479 CTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCCATATCTCTCAGCGTTC 538
Query 528 TTCTCAACGTTTGCAACAGAAGGCTTCCGTCTAATTTCCAATGTGCTTGAG-GGATATC 585
||||||||||||| |||||||||||||||||| ||| ||||||||||||| || ||||
Sbjct 539 TTCTCAACGTTTGTAACAGAAGGCTTCCGTCTGGTTTTCAATGTGCTTGAGCGG-TATC 596
> Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1
Length=679
Score = 409 bits (221), Expect = 2e-113
Identities = 360/425 (85%), Gaps = 17/425 (4%)
Strand=Plus/Plus
Query 236 CCAACTCCTTCGGTCCCAAGTCCTTCCGTACCAAGTCCTAACCCTACGCCAGTCATTCCT 295
|||| |||||||||||||| |||||| || ||||||||||| |||| ||| |||| |||
Sbjct 174 CCAAGTCCTTCGGTCCCAACTCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCT 233
Query 296 CCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTC-AGACTCGGTGTATG 354
|| || |||||| ||||||| |||||||| ||||| |||| |||| || |||||||||||
Sbjct 234 CCAAGCACCCCTAGTTCATCTGGAAACTGCCCTATAGATGTTCTCAAG-CTCGGTGTATG 292
Query 355 TGCGAATGTGCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCACCTCAACCATG 414
||| ||||| |||||| ||||||||||| | |||||||| ||||||||| ||||||||||
Sbjct 293 TGCAAATGTCCTAAGCAGTCTACTTAACATCCAGTTGGGTCAGCCATCAGCTCAACCATG 352
Query 415 CTGCTCACTCATTCAAGGTTTGGTTGACCTTGACGCTGCGGTTTGCCTATGCACTGCTCT 474
||||| || || ||||||||||||||| | ||||||||| |||| || |||||||||||
Sbjct 353 TTGCTCGCTTATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTGTGCACTGCTCT 412
Query 475 TAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTCTTCTCAA 534
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 413 TAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCAATATCTCTCAGCGTTCTTCTCAA 472
Query 535 CGTTTGCAACAGAA-GGCTTCCGTCTAATTTCCAATGTGCTTGAGGGATATCAATTACAC 593
|||||| ||||||| || |||||||| |||||||||||||| | ||||||| || |
Sbjct 473 CGTTTGTAACAGAAAGG-TTCCGTCTGGTTTCCAATGTGCTTAAACGATATCAGCTATGC 531
Query 594 ATACGA--CG---C----ACACAGTTTACTCTTTAAAATAA-TCACAGTTTGAATAA-TT 642
|||||| || | ||||| | ||||||| ||||| | | ||||||||||||| ||
Sbjct 532 ATACGATGCGATGCCCGTACACAATATACTCTTCAAAATTACT-ACAGTTTGAATAAATT 590
Query 643 GCATG 647
||||
Sbjct 591 -CATG 594
> Ahg943163 jgi|Araly1|943163|scaffold_603707.1
Length=495
Score = 405 bits (219), Expect = 2e-112
Identities = 267/291 (92%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 294 CTCCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTCAGACTCGGTGTAT 353
||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 192 CTCCGAGCACCCCAGGCTCATCTAGAAACTGTCCTATCGATGCTCTCAGACTCGGTGTAT 251
Query 354 GTGCGAATGTGCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCACCTCAACCAT 413
|||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 252 GTGCAAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCCAT 311
Query 414 GCTGCTCACTCATTCAAGGTTTGGTTGACCTTGACGCTGCGGTTTGCCTATGCACTGCTC 473
||||||| ||||| ||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 312 GCTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGCCTCTGCACTGCTC 371
Query 474 TTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTCTTCTCA 533
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 372 TTAGGGCTAACGTTCTCGGTATCAACCTTAACGTTCCTATATCTCTCAGCGTTCTTCTCA 431
Query 534 ACGTTTGCAACAGAAGGCTTCCGTCTAATTTCCAATGTGCTTGAGGGATAT 584
||||||| |||||||||||||||||| ||||||||||||||| |||||
Sbjct 432 ACGTTTGTAACAGAAGGCTTCCGTCTGGCTTCCAATGTGCTTGAACGATAT 482
Score = 228 bits (123), Expect = 6e-59
Identities = 162/180 (90%), Gaps = 5/180 (3%)
Strand=Plus/Plus
Query 23 ATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCtt 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 ATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCTT 76
Query 83 tttttCACCTTAACCGCTGGTACTAATTGTAGATGCAACCCGAGTCCTAAGC-CTAGGCC 141
|||||||||||||||| || |||| |||||| ||||||||| |||||||||| | || ||
Sbjct 77 TTTTTCACCTTAACCGTTGCTACTGATTGTAAATGCAACCCAAGTCCTAAGCAC-AGTCC 135
Query 142 --GC-TCCCAAATCCTAAGGTCCCAAGTCCTAAGGTCCCAACTCCTTCGGTCCCAAGTCC 198
| |||||| ||||| |||||||| |||| ||||||||||||||||||||||| |||
Sbjct 136 TAGGGTCCCAACTCCTAGGGTCCCAATTCCTTCGGTCCCAACTCCTTCGGTCCCAACTCC 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5