BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12510.1 Length=568 Score E Sequences producing significant alignments: (Bits) Value Ahg943165 jgi|Araly1|943165|scaffold_603709.1 547 3e-155 Ahg943164 jgi|Araly1|943164|scaffold_603708.1 538 2e-152 > Ahg943165 jgi|Araly1|943165|scaffold_603709.1 Length=430 Score = 547 bits (296), Expect = 3e-155 Identities = 370/406 (91%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 1 ATGGCTTCAAAAATTTCAGCCTCTCTTGTCATTTTCCTCACATTCAACATTCtttttttC 60 |||||||| |||| ||||| || |||||||||||||||||||||||||| || || ||| Sbjct 21 ATGGCTTCGAAAACCTCAGCATCCCTTGTCATTTTCCTCACATTCAACATCCTCTTCTTC 80 Query 61 ACTTTAACCACCGCATGTGGCGGTGGCTGCAGTTCC-ACCCCTAAACCCAAACCTAAGCC 119 || || |||||||||||||||||||||||||| ||| |||||||||||||| |||||||| Sbjct 81 ACCTTGACCACCGCATGTGGCGGTGGCTGCAG-TCCAACCCCTAAACCCAAGCCTAAGCC 139 Query 120 CAAGTCCACCGGAAGCTGCCCTAA-AGACACTCTCAAGCTCGGCGTTTGCGCCAATGTTC 178 ||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| | Sbjct 140 CAAGTCCACCGGAAGCTGCCC-AAGAGACACTCTCAAGCTTGGCGTTTGCGCCAATGTCC 198 Query 179 TCAAGGATCTTCTCAAAATTCAGTTGGGAACACCACCAGTGAAGCCTTGTTGTTCGCTCC 238 ||||||||||||||||||| |||||||| ||||||||||| |||||||| || || |||| Sbjct 199 TCAAGGATCTTCTCAAAATCCAGTTGGGCACACCACCAGTCAAGCCTTGCTGCTCCCTCC 258 Query 239 TCAATGGTTTAGTTGATCTTGAGGCTGCCGCTTGTCTCTGCACCGCCCTAAAGGCTAAAG 298 | || ||| | ||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 259 TTAAGGGTCTGGTTGATCTTGAGGCTGCGGCTTGTCTCTGCACCGCCCTAAAGGCTAATG 318 Query 299 TTTTAGGCATTAATCTTAATGTTCCCGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGCA 358 | ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 319 TCTTAGGCAATAAACTTAATGTTCCAGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGCA 378 Query 359 AGAAGGTTCCTTCTGGTTTCGTATGTGCTTGATATATCTATCCACC 404 ||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 379 GGAAGGTTCCTTCTGGATTCGTATGTGCTTGATTTATCTATCCACC 424 > Ahg943164 jgi|Araly1|943164|scaffold_603708.1 Length=432 Score = 538 bits (291), Expect = 2e-152 Identities = 374/414 (90%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 1 ATGGCTTCAAAAATTTCAGCCTCTCTTGTCATTTTCCTCACATTCAACATTCtttttttC 60 |||||||| |||| ||||| || |||||||||||||||||||||| ||| || || ||| Sbjct 22 ATGGCTTCGAAAACCTCAGCATCCCTTGTCATTTTCCTCACATTCAGCATCCTCTTCTTC 81 Query 61 ACTTTAACCACCGCATGTGGCGGTGGCTGCAGTTCC-ACCCCTAAACCCAAACCTAAGCC 119 || || |||||||||||||||||||||||||| ||| |||||||||||||| |||||||| Sbjct 82 ACCTTGACCACCGCATGTGGCGGTGGCTGCAG-TCCAACCCCTAAACCCAAGCCTAAGCC 140 Query 120 CAAGTCCACCGGAAGCTGCCCTAA-AGACACTCTCAAGCTCGGCGTTTGCGCCAATGTTC 178 | ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| | Sbjct 141 CCAGTCCACCGGAAGCTGCCC-AAGAGACACTCTCAAGCTTGGCGTTTGCGCCAATGTCC 199 Query 179 TCAAGGATCTTCTCAAAATTCAGTTGGGAACACCACCAGTGAAGCCTTGTTGTTCGCTCC 238 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || |||| Sbjct 200 TCAAGGATCTTCTCAAAATCCAGTTGGGCACACCACCAGTCAAGCCTTGTTGCTCCCTCC 259 Query 239 TCAATGGTTTAGTTGATCTTGAGGCTGCCGCTTGTCTCTGCACCGCCCTAAAGGCTAAA- 297 |||| ||| | ||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 260 TCAAGGGTCTGGTTGATCTTGAGGCTGCGGCTTGTCTCTGCACTGCCCTAAAGGC-AAAT 318 Query 298 GTTTTAGGCATTAATCTTAATGTTCCCGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGC 357 |||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 319 GTTTTAGGCACTAAGCTTAATGTTCCTGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGC 378 Query 358 AAGAAGGTTCCTTCTGGTTTCGTATGTGCTTGATATATCTATCCACCCTTCGAT 411 | ||||||||||||| |||||||||||||||| |||||| |||||||||||| Sbjct 379 AGGAAGGTTCCTTCTAAATTCGTATGTGCTTGATCTATCTACCCACCCTTCGAT 432 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20756640416 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5