BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12510.1
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943165 jgi|Araly1|943165|scaffold_603709.1 547 3e-155
Ahg943164 jgi|Araly1|943164|scaffold_603708.1 538 2e-152
> Ahg943165 jgi|Araly1|943165|scaffold_603709.1
Length=430
Score = 547 bits (296), Expect = 3e-155
Identities = 370/406 (91%), Gaps = 4/406 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCAAAAATTTCAGCCTCTCTTGTCATTTTCCTCACATTCAACATTCtttttttC 60
|||||||| |||| ||||| || |||||||||||||||||||||||||| || || |||
Sbjct 21 ATGGCTTCGAAAACCTCAGCATCCCTTGTCATTTTCCTCACATTCAACATCCTCTTCTTC 80
Query 61 ACTTTAACCACCGCATGTGGCGGTGGCTGCAGTTCC-ACCCCTAAACCCAAACCTAAGCC 119
|| || |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 81 ACCTTGACCACCGCATGTGGCGGTGGCTGCAG-TCCAACCCCTAAACCCAAGCCTAAGCC 139
Query 120 CAAGTCCACCGGAAGCTGCCCTAA-AGACACTCTCAAGCTCGGCGTTTGCGCCAATGTTC 178
||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
Sbjct 140 CAAGTCCACCGGAAGCTGCCC-AAGAGACACTCTCAAGCTTGGCGTTTGCGCCAATGTCC 198
Query 179 TCAAGGATCTTCTCAAAATTCAGTTGGGAACACCACCAGTGAAGCCTTGTTGTTCGCTCC 238
||||||||||||||||||| |||||||| ||||||||||| |||||||| || || ||||
Sbjct 199 TCAAGGATCTTCTCAAAATCCAGTTGGGCACACCACCAGTCAAGCCTTGCTGCTCCCTCC 258
Query 239 TCAATGGTTTAGTTGATCTTGAGGCTGCCGCTTGTCTCTGCACCGCCCTAAAGGCTAAAG 298
| || ||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 259 TTAAGGGTCTGGTTGATCTTGAGGCTGCGGCTTGTCTCTGCACCGCCCTAAAGGCTAATG 318
Query 299 TTTTAGGCATTAATCTTAATGTTCCCGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGCA 358
| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 319 TCTTAGGCAATAAACTTAATGTTCCAGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGCA 378
Query 359 AGAAGGTTCCTTCTGGTTTCGTATGTGCTTGATATATCTATCCACC 404
||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 379 GGAAGGTTCCTTCTGGATTCGTATGTGCTTGATTTATCTATCCACC 424
> Ahg943164 jgi|Araly1|943164|scaffold_603708.1
Length=432
Score = 538 bits (291), Expect = 2e-152
Identities = 374/414 (90%), Gaps = 6/414 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCAAAAATTTCAGCCTCTCTTGTCATTTTCCTCACATTCAACATTCtttttttC 60
|||||||| |||| ||||| || |||||||||||||||||||||| ||| || || |||
Sbjct 22 ATGGCTTCGAAAACCTCAGCATCCCTTGTCATTTTCCTCACATTCAGCATCCTCTTCTTC 81
Query 61 ACTTTAACCACCGCATGTGGCGGTGGCTGCAGTTCC-ACCCCTAAACCCAAACCTAAGCC 119
|| || |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 82 ACCTTGACCACCGCATGTGGCGGTGGCTGCAG-TCCAACCCCTAAACCCAAGCCTAAGCC 140
Query 120 CAAGTCCACCGGAAGCTGCCCTAA-AGACACTCTCAAGCTCGGCGTTTGCGCCAATGTTC 178
| ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
Sbjct 141 CCAGTCCACCGGAAGCTGCCC-AAGAGACACTCTCAAGCTTGGCGTTTGCGCCAATGTCC 199
Query 179 TCAAGGATCTTCTCAAAATTCAGTTGGGAACACCACCAGTGAAGCCTTGTTGTTCGCTCC 238
||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || ||||
Sbjct 200 TCAAGGATCTTCTCAAAATCCAGTTGGGCACACCACCAGTCAAGCCTTGTTGCTCCCTCC 259
Query 239 TCAATGGTTTAGTTGATCTTGAGGCTGCCGCTTGTCTCTGCACCGCCCTAAAGGCTAAA- 297
|||| ||| | ||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 260 TCAAGGGTCTGGTTGATCTTGAGGCTGCGGCTTGTCTCTGCACTGCCCTAAAGGC-AAAT 318
Query 298 GTTTTAGGCATTAATCTTAATGTTCCCGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGC 357
|||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 319 GTTTTAGGCACTAAGCTTAATGTTCCTGTCTCTCTCAGCCTTCTTCTCAATGTTTGTGGC 378
Query 358 AAGAAGGTTCCTTCTGGTTTCGTATGTGCTTGATATATCTATCCACCCTTCGAT 411
| ||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 379 AGGAAGGTTCCTTCTAAATTCGTATGTGCTTGATCTATCTACCCACCCTTCGAT 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20756640416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5