BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G12530.1

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490054 jgi|Araly1|490054|fgenesh2_kg.6__3188__AT4G12530.1         640    0.0  


> Ahg490054 jgi|Araly1|490054|fgenesh2_kg.6__3188__AT4G12530.1
Length=433

 Score =  640 bits (346),  Expect = 0.0
 Identities = 408/437 (93%), Gaps = 7/437 (2%)
 Strand=Plus/Plus

Query  1    ATGCTACATAACTCAAAGTAACAAACATACACATATAACATATAGAAAGATCGAAAACAA  60
            |||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||| 
Sbjct  1    ATGCTACATAGCTCAAAGTAACAAACATACCCTTATAACATATAGAAAGATCG-AAACAC  59

Query  61   AAGATCGGGATGAGTATGGCTCCAAAGACCTCAACTACACTTGCTTTATTCCTTGTGACC  120
            ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  60   AAGATCGGGATGATTATGGCTCCAAAGACCTCAGCTACACTTGCTTTATTCCTTGTGATC  119

Query  121  AATATTCTCTTCCTCAACCTCATTA-CCCTGAG-TTGCGCAGACAATACTTGCCCAAGAG  178
            ||||||||||||||||||||||||| ||| | | || |||||| ||||||||||| ||||
Sbjct  120  AATATTCTCTTCCTCAACCTCATTATCCC-G-GTTTTCGCAGAAAATACTTGCCCGAGAG  177

Query  179  ACGTTCTCAAACTTTCGACATGCTCGAATGTTCTCAACCTCATCAACTTGAAGCTCGGGG  238
            ||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |
Sbjct  178  ACGCTCTCAAACTTTCCACATGCGCGAATGTTCTCAACCTCATCAACTTGAATCTCGGTG  237

Query  239  CACCAGCTATGAGGCCTTGTTGCTCTATTCTCTTTGGTCTAATTGATCTCGATGTTGCTG  298
            ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  238  CACGAGCTATGAGACCTTGTTGCTCTATTCTCTTTGGTCTAATTGATCTCGATGTTG-TG  296

Query  299  -TTTGCCTTTGCACCGCGCTCAAGCTCAGCCTTCTTGGCATCACCATCGACACTCCTATT  357
             ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTTTGCCTTTGCACCGCGCTGAAGCTCAGCCTTCTTGGCATCACCATCGACACTCCTATT  356

Query  358  CACCTTAACTTGGCTCTTAACGCCTGTGGAGGTACCCTTCCTGATGGATTCCGTTGCCCA  417
            || |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  357  CATCTTAACTTAGCCCTTAACGCCTGTGGAGGTACCCTTCCCGATGGATTCCGTTGCCCA  416

Query  418  ACATAGCTACAATATAT  434
            |||||||||||||||||
Sbjct  417  ACATAGCTACAATATAT  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19573817157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5