BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12540.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895473 jgi|Araly1|895473|Al_scaffold_0006_3469 944 0.0
> Ahg895473 jgi|Araly1|895473|Al_scaffold_0006_3469
Length=1380
Score = 944 bits (511), Expect = 0.0
Identities = 576/608 (95%), Gaps = 2/608 (0%)
Strand=Plus/Plus
Query 288 TATGCAGCCATGGTTTCCTCGATTGCAAGAAGCGATGTCTGATTTTCAGTTGCTTCCAGA 347
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 255 TATGCAGCCATGGTTTCCTCGATTGGAAGAAGCGATGTCTGATTTTCAGTTGCTTCCGGA 314
Query 348 GGATCAGGAAGAACAGTCTTTGATGAGCACAAACGAAGAAGAAGATTTGTTTGATGTTGA 407
|||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 315 GGATAAGGAAGGACAGTCTTTGATGAGCACAAACAAAGAAGAAGATTTGTTTGATGTTGA 374
Query 408 GAGTCCTGAGCCTACTCAATTTGAGCCCTTAGTCTCTCCTTCTCCTCTTGTGCATTGGCG 467
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 375 GAGTCCTGAGCCTACTCAATTTGAGCCCTTAGTCTCTCCTTCTCCTCTCGTGCATTGGCG 434
Query 468 TGGTGATCATAACGCAGACAAGGGTAGACAACTCTTTCTTTTGACACCACTACCCTTAGG 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TGGTGATCATAACGCAGACAAGGGTAGACAACTCTTTCTTTTGACACCACTACCCTTAGG 494
Query 528 AAAATCTGAATTCCTAAAACACCAGAATGCATCTAAGCTTACAGCTAAAAGGATTTTTCC 587
||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| ||
Sbjct 495 AAAATCTGAATTCCTTAAACATCAGAATGCGTCTAAGCTGACAGCTAAAAGGATTTTCCC 554
Query 588 AGAC-ACTGTTGCAAATGAACCGCTTGAAGCTTCTAAAGAAACAAGTGATGATGTTTTAG 646
|||| | | ||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 555 AGACGA-TACTGCAAATAAATCGCTTGAAGCTTCTAAAGAAACAAGTGATGATGTTTTAG 613
Query 647 GAGGTGAGTCGTTGAAAACTGCAGGACTTGGTAAATCTTTAGTCCATGCCATGGATTTCT 706
||||||||| | |||||||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 614 GAGGTGAGTTGATGAAAACTGCAGGACTTGGTAACTCTTTAGGCCATGCCATTGATTTCT 673
Query 707 CTGAAAATTTGGTTGAGTATAAGCCATGTTCTTCACCAGTTCTCAGGAGAAAGATTCTGT 766
||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct 674 CTGAAAAATTGGTAGAGTATGAGCCATGTTCTTCACCAGTTCTCAGGAGAAAAATTCAGT 733
Query 767 CTGAGCTTCTAATGACACCTTGCTTGAAGCTGTCGCCTCCGAAATCGTGTACAATGTTTA 826
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 734 CTGAGCTTCTAATGACACCTTGCTTGAAGATGTCGCCTCCGAAATCGTGTACAATGTTTA 793
Query 827 AACCGGTTCCTGAATCTTCTCAACTGGGAAAGCAAGGGGCTTGTAAGTCTACCTGCTCTG 886
|||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 794 AACCGGTTCCTGAAACTTCTCAACTGGTAAAGCATGGGGCTTGTAAGTCTACCTGCTCTG 853
Query 887 AATTGGGA 894
|| |||||
Sbjct 854 AACTGGGA 861
Score = 527 bits (285), Expect = 9e-149
Identities = 443/512 (87%), Gaps = 40/512 (8%)
Strand=Plus/Plus
Query 892 GGATCATCTGGTATTGAAAAAACAGACAATCTCTGCTCGAAGTATCCTGAGCTCTTGGGA 951
||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 892 GGATCCTCTGGTATTGAAACAACAGACAACCTCTGCTCGAAGTATCCTGAGCTCTTGGGA 951
Query 952 ATACAACATGCTCCGATAACTA-GAAAAACGGATCTTGAATCCTCGCCGGTTTGGTGGTT 1010
|| ||||||||||| || || | ||||||||||||||||||||||||| |||||||||||
Sbjct 952 ATGCAACATGCTCCAATTAC-ACGAAAAACGGATCTTGAATCCTCGCCAGTTTGGTGGTT 1010
Query 1011 TTCTCCTCCTAAAACATGTGTTTTAATGGAGCCTGTGAATGAGAAGAAACCAATTGATGA 1070
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1011 TTCTCCTCCTAAAACATGTGTTTTAATGGAGCCTTTGAATGAGAAGAAACCGATTGATGA 1070
Query 1071 AACTGGTGGATC-----T--T-T--TGAT--G-TT--CCAAACATTATACCAGAAGCAAA 1115
|||||||||||| | | | | || | || |||||||||| | || ||||
Sbjct 1071 AACTGGTGGATCCAGAATGGTATCCTCATTTGATTTGCCAAACATTA-A--AG---CAAA 1124
Query 1116 ACACACTACAGAGGGAAGCATGTCAATGGTGGTTGAGAGTACTCCATTGTTTAAAGAACC 1175
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1125 ACACACTACAGACGGAAGCATGTCAATGGTGGTTGAGAGTACTCCATTATTTAAAGAACC 1184
Query 1176 AGAGAGCATAATGACGAGAAACAGAACAAAAGCAGGTGAGAGTACTCTGAAGAAAGAGCT 1235
||||||||||||||| | ||| | || | | ||||| |||| |||||||||||||
Sbjct 1185 AGAGAGCATAATGAC-A-AAA--G--CA---G--G-TGAGAATACTTTGAAGAAAGAGCT 1232
Query 1236 ATGGACAAGATTTGAAGAAGCAACGATTCATGACAGTCGGTTCAACTCGATGACAACAAC 1295
|||||||||||||||||||||| | |||||||| |||||||| | ||||||||||||||
Sbjct 1233 ATGGACAAGATTTGAAGAAGCATCAATTCATGATAGTCGGTTTAGTTCGATGACAACAAC 1292
Query 1296 AACAACAGTGAGAGGAAATAATAAGAAAT-GTTTCATGGAAATGTTAGAAGAAGTGAGTG 1354
||| | ||||||||||||| ||||| ||| ||||||||||||||| ||||||||||
Sbjct 1293 AACGA---TGAGAGGAAATAAGCAGAAAGAGTT-CATGGAAATGTTAGAGGAAGTGAGTG 1348
Query 1355 GCAATGAGGAAGATCATGAGTTAAGTGTATGA 1386
||||||||||| |||| ||||||| | |||||
Sbjct 1349 GCAATGAGGAAAATCAGGAGTTAAATTTATGA 1380
Score = 268 bits (145), Expect = 6e-71
Identities = 219/253 (87%), Gaps = 11/253 (4%)
Strand=Plus/Plus
Query 1 ATGGAACCTTATATAACCAGAAGAGAT-A--CAGTTA-ATCAAGTGTTACATGCAGAAGA 56
|||||||||||||||| |||||||||| | |||| | || || |||| ||||||
Sbjct 1 ATGGAACCTTATATAAGCAGAAGAGATGATTTTGTTAGAGGAA-TGAAACATATAGAAGA 59
Query 57 AGA--A--GAAG-AAT-ACAATGATTGTGAATTGGATCAACTCTTCCTTGTGCATTCTGA 110
||| | || | | || |||||||||| | ||||||||||||||||| ||||||||
Sbjct 60 AGACCATGGAGGTGGTGGCAGTGATTGTGAACTAGATCAACTCTTCCTTGTACATTCTGA 119
Query 111 TATTAGATCTGTTCTTCTCCAGATTGATGAGCTTGTTGTTGAAGCCACAAAGCGTAAGAC 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 TATTAGATCTGTTCTTCTCCAGATTGATGAGCTTGTTGTTGAAGCCACAAAGCGAAAGAC 179
Query 171 CGTGAGCAAGCACGGGTTAATAGAAGTTGAATCTTTCAGAACTGTGTTGTCTGATATGCT 230
||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 180 CGTGACCAAACACGGGTTAAGAGAAGTTGAATCTTTCAGATTTGTGTTGTCTGATATGCT 239
Query 231 TTCCTCACTAAAG 243
|||||||||||||
Sbjct 240 TTCCTCACTAAAG 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5