BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12560.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490057 jgi|Araly1|490057|fgenesh2_kg.6__3191__AT4G12560.2 1927 0.0
> Ahg490057 jgi|Araly1|490057|fgenesh2_kg.6__3191__AT4G12560.2
Length=1725
Score = 1927 bits (1043), Expect = 0.0
Identities = 1205/1283 (94%), Gaps = 12/1283 (1%)
Strand=Plus/Plus
Query 48 AAAAATGGCGACGATTCCAATGGATATCGTCAACGACATATTCCTCCGATTACCAGCAAA 107
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAAAATGGCGACGATTCCAATGGATATCGTCAACGACATCTTCCTCCGATTACCAGCAAA 60
Query 108 AA-CTCTAGTTCGTTGCCGTGCTCTCTCTAAGCCATGTTATCATCTAATCAACGATCCAG 166
|| || |||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 61 AACCT-TAGTTCGTTGTCGTACTCTCTCAAAGCCATGTTATCATCTAATCAACGATCCCG 119
Query 167 ATTTCATCGAATCTCATCTTCATCGCGTTCTTCAAACCGGTGATCATCTCATGATTCTTC 226
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 120 ATTTCATCGAATCTCATCTTCATCGCGTTCTTCAATCTGGTGATCATCTCATGATTCTTC 179
Query 227 TCAGAGGAGCTCTTCGTCTCTACTCTGTAGATCTCGATTCACTTGATTCCGTCTCCGACG 286
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 180 TCAGAGGAGCTCTTCGTCTCTACACTGTTGATCTCGATTCACTTGATTCCGTCTCCGACG 239
Query 287 TTGAGCATCCGATGAAACGTGGTGGTCCGACCGAAGTTTTTGGTTCTTCCAACGGTTTAA 346
| |||||||||||||||||||||||||| || |||||||| || || ||||||||||
Sbjct 240 TCGAGCATCCGATGAAACGTGGTGGTCCCACTGAAGTTTTCGGATCCAGTAACGGTTTAA 299
Query 347 TCGGGTTATCGAATTCTCCAACTGATTTAGCGGTTTTTAATCCTTCGACTCGACAGATTC 406
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 300 TCGGGTTATCGAATTCTCCGACTGATTTAGCGGTTTTTAATCCGTCTACTCGACAGATTC 359
Query 407 ATCGATTACCTCCTTCGTCTATCGATCTCCCCGATGGTTCGAGTACTCGTGGTTACGTGT 466
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 ATCGATTACCTCCTTCGTCTATCGATCTTCCCGATGGTTCGAGTACTCGTGGTTACGTGT 419
Query 467 TTTACGGATTAGGTTATGATTCTGTTAGTGATGATTATAAAGTTGTGAGGATGGTTCAGT 526
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 TTTACGGATTTGGTTATGATTCTGTGAGTGATGATTATAAAGTTGTGAGGATGGTTCAGT 479
Query 527 TTAAGATAGATTCAGAAGATGAACTTGGTTGTAGTTTTCCTTATGAGGTTAAAGTGTTTA 586
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 TTAAGATAGATTCTGATGATGAGCTTGGTTGTAGTTTTCCTTATGAGGTTAAAGTGTTTA 539
Query 587 GTTTGAAGAAGAATTCATGGAAGAGAATCGAATCAG---TGGCGTCGTCGATTCAGCTTT 643
|||| ||||||||||||||||| ||||||||||| | || || ||||||||| |||||
Sbjct 540 GTTTAAAGAAGAATTCATGGAAAAGAATCGAATCGGTTTTGACGGCGTCGATTCGGCTTT 599
Query 644 TGTTTTACTTTTATTATCATCTCTTGTATCGTCGTGGTTATGGTGTTCTTGCTGGTAATA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTTTTACTTTTATTATCATCTCTTGTATCGTCGTGGTTATGGTGTTCTTGCTGGTAATA 659
Query 704 GTCTTCATTGGGTTTTACCTAGAAGACCTGGTTTGATTGCGTTTAATCTCATTGTTAGAT 763
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 660 GTCTTCATTGGGTTTTACCTCGAAGACCTGGTTTGATTGCGTTTAATCTCATTGTGAGGT 719
Query 764 TTGATCTTGCCTTGGAAGAGTTTGAGATTGTTCGGTTTCCTGAAGCGGTTGCGAATGGTA 823
|||||||||||||||||||||||| |||||| ||||||| ||||| || || |||||||
Sbjct 720 TTGATCTTGCCTTGGAAGAGTTTGGGATTGTGAGGTTTCCGGAAGCTGTGGCTAATGGTA 779
Query 824 ATGTTGATATTCAGATGGATAT-AGGTGTTTTAGATGGTTGTCTTTGCTTGATGTGTAAC 882
|||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 780 ATGTCGATATTCAGATGGATATCAG-TGTTTTAGATGGTTGTCTTTGTTTGATGTGTAAC 838
Query 883 TATGATCAGAGTTATGTTGATGTTTGGATGATGAAAGAATACAATGTGAGG-GATTCTTG 941
|||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 839 TATGATCAGAATTATGTTGATGTTTGGATGATGAAAGAATACAATGTGAGAAG-TTCTTG 897
Query 942 GACTAAGGTTTTTACGGTTCAGAAACCGAAAAGTGTGAAGTCGTTTTCGTATATGAGACC 1001
||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 898 GACTAAGGTGTTTACGGTTCAGAAACCAAAAAGTGTGAAATCGTTTGCGTATATGAGACC 957
Query 1002 TTTGGTTTATTCTAAGGATAAGAAAAAGGTTCTTTTGGAGCTTAATAATACAAAGCTAGT 1061
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 958 TTTGGTTTATTCTAAGGACAAGGATAAGGTTCTTTTGGAGCTTAATAATACAAAGCTAGT 1017
Query 1062 CTGGTTTGATTTAGAGAGTAAGAAGATGAGTACTCTTAGGATTAAGGATTGCCCTAGCTC 1121
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTGGTTTGATATAGAGAGTAAGAAGATGAGTACTCTTAGGATTAAGGATTGCCCTAGCTC 1077
Query 1122 GTATAGTGCGGAACTCGTTGTGAGTAGCCTTGTCTTGGGGTGTAAAGGAGATCTT-AATA 1180
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 1078 GTATAGTGCGGAAGTCGTTGTGAGTAGCCTTGTTTTGGGGTGTAAAGGAGATCTTGAA-A 1136
Query 1181 ACATTAAGTATCGAAAAGAACAACAAGCTAAAGAAGCTAGAGAAGCTAAAATTATGCAGA 1240
| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1137 ATATTAAGTATCGGAAAGAACAAGAAGCTAAAGAAGCTAGAGAAGCTAAAATGATGCAGA 1196
Query 1241 ACACTAAAAGGAGGGATGATTTCCTGTCCAAAGGATTCAAGCTGGTCTTATAAGCCAAAA 1300
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 1197 ACACTAAAAGGAGGGATGATTTCCTGTCCAAGGGATTCAAGCTGGTCTTATAAACAAAAA 1256
Query 1301 A-CAAGAGACAGGAGCTAAAGCT 1322
| ||||||||| |||||||||||
Sbjct 1257 AACAAGAGACAAGAGCTAAAGCT 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5