BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12570.1
Length=3112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490058 jgi|Araly1|490058|fgenesh2_kg.6__3192__AT4G12570.1 4154 0.0
> Ahg490058 jgi|Araly1|490058|fgenesh2_kg.6__3192__AT4G12570.1
Length=2962
Score = 4154 bits (2249), Expect = 0.0
Identities = 2667/2864 (93%), Gaps = 48/2864 (2%)
Strand=Plus/Plus
Query 36 CTGTGTTAAACCCAGACGAAAccttcgatcttcttctcctctctcaatctcttcaccttc 95
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||
Sbjct 1 CTGTGTTAAACCCAGACGAAACCTCCGATCTTCTTCTCCTCTC-CAATCTCTTCATCTTC 59
Query 96 cttcctccttcttcctcacctctATACTCCGTTACGGTTAATTTTCCGGC--CATCGAAT 153
| |||||| || ||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 60 C-TCCTCC-TCCTCCTCACCTCTGTACTCCGTTACGGTTAATTTTCCGGCGAAATCG-AT 116
Query 154 GTTGGATAAGGTTTTCGCG-AAAGCCGATagagaaagatagagacagagagagagagaTT 212
|||||||||||||| ||| ||| || ||| | ||||||| | |||||||||||||
Sbjct 117 -TTGGATAAGGTTTTGGCGAAAAACC---AGA-ACCGATAGAG--ATAGAGAGAGAGATT 169
Query 213 CTCGTCGCTAAATGACTCTAAGCCGTTCATCAGCCGACGATTCAACCAATAACGCTAACC 272
||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 170 CTCGTCGCTCGATGACTCTAAGCCGTTCATCAGCCGCCGATTCAACCAATAACTCTAACC 229
Query 273 GATCTTACTCCGCCGTGGCTGGAACCGATAACAAAC-G-AA--A-ACGA-GACGA-G--- 322
||||||||||||||||||||||||||||| | |||| | || | |||| |||| |
Sbjct 230 GATCTTACTCCGCCGTGGCTGGAACCGATCATAAACGGAAACTAGACGATTACGACGCTT 289
Query 323 -GAC-TCTTCTGATTACGTCGGCGTTGCTGAAAGTCTCGAGATGTTGAAGAAACAAGAAA 380
| | ||| |||||||||||||||||| ||| |||| ||| |||||||||| ||||
Sbjct 290 CGTCGTCTCCTGATTACGTCGGCGTTGTTGATTTTCTCCAGAAAATGAAGAAACACGAAA 349
Query 381 TCGACGCCGATCATATGGCTGCGTCGGCTCAACAGACTTTAATTTCATGGAGATCCGGTG 440
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 350 TTGACGCCGATCATATGGCTGCGTCGGCTCAACAGACTTTGATTTCGTGGAGATCCGGTG 409
Query 441 AGAATTCC---------CGGTCTCTATCTTCTTCCGGTGAGTGTTCTTCGTCGAATCGTC 491
|||||||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 410 AGAATTCCGGATTTAATCGGTCTTTATCTTCTTCCGGCGAGTGTTCTTCGTCGAATCGTC 469
Query 492 CTGAGTCGACTCGGTTACAAATCTTTGTGAGGATGATGTCTGGAGGTAAAACGATTGTGA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CTGAGTCGACTCGGTTACAAATCTTTGTGAGGATGATGTCTGGAGGTAAAACGATTGTGA 529
Query 552 TCCACGCTGAGAAATACGATACTGTTGAGAAACTTCATCAGAGAATCGAGTGGAAAACGA 611
|||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 530 TCCACGCTGATAAAAACGATACTGTTGAGAAGCTTCATGAGAGAATCGAGTGGAAAACGA 589
Query 612 AGATTCCGGCGCTTGAGCAACGAGTTATCTACAAAGGTAAGCAGCTACAGCGTGAAAACT 671
||||||||| | |||||||||||||||||| |||||||||||| ||||| |||| |||
Sbjct 590 AGATTCCGGTGAGTGAGCAACGAGTTATCTATAAAGGTAAGCAGTTACAGTATGAACACT 649
Query 672 CGCTTACTTACTACTCCATCGAGCAAGACGCTTCGCTTCAGCTCGTTGCTCGTATGCAGA 731
||||| |||||||||| ||||||||||||||||||||||||||||||| | | |||||||
Sbjct 650 CGCTTGCTTACTACTCGATCGAGCAAGACGCTTCGCTTCAGCTCGTTGGTAGGATGCAGA 709
Query 732 GCACAGAGCATCCTGTAGCTTGGCAAACGATTGATGATATTATGTATACAATTTCGAGAA 791
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 710 GCACAGAGCATCCTGTAGCTTGGCAAACGATTGATGATATTATGTACACAATTTCGAGAA 769
Query 792 TGTATAAAGGTGAGAATCTTCAATCTAACATCAACGAGAAGATTGTTACTTTCTTTGCGA 851
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 770 TGTATAAAGGTGAGAATCTTCAATCTAACATAAATGAGAAGATTGTTACTTTCTTCGCGA 829
Query 852 TGATTCCTGTGGAGAGTGACGAATCGATTGCGAAATATCTCAACATTTTCTCGAACTCTT 911
||||||||||||||| || |||||||||||||||||| | || ||||||||||||||||
Sbjct 830 TGATTCCTGTGGAGAACGATGAATCGATTGCGAAATATTTGAAGATTTTCTCGAACTCTT 889
Query 912 CGGTTCCAGCTGCTTTAGTGATGCTATATGCTTCTTCTTTAGAGAGGAATAAGTCTTGTG 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CGGTTCCAGCTGCTTTAGTGATGCTATATGCTTCTTCTTTAGAGAGGAATAAGTCTTGTG 949
Query 972 CTAAGAGCTCTGTTAAGCTGTTCTTGAGTAATTGTGTAGCTTTACCGAAGAATCAGAAGA 1031
||||||| |||||||||||||| ||||||| || ||||| || |||||||||||| |||
Sbjct 950 CTAAGAGTTCTGTTAAGCTGTTTTTGAGTAGCTGCGTAGCCTTGCCGAAGAATCAGCAGA 1009
Query 1032 ACTATTGTTTACCAATAGTGTTAGAGTTTTGTAAACTGCTTAGGAAAGTTTGCCCTGATC 1091
||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1010 ACTATTGTTTACCGATAGTGTTAGAGTTTTGTAAAATTCTTAGGAAAGTTTGCCCTGATC 1069
Query 1092 AGAAGCTATATGTTACTTGCCGGAACACCTTGGGATCGATGCTGGAAACGTTTGATAACC 1151
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1070 AGAAGCTATATGTTACTTGCCGGAACACCTTGGGATCAATGCTGGAGACGTTTGATAACC 1129
Query 1152 CTCATGGTGTATATAATGATCAATATGAGACTTTTGGGGTGGAGATTTTCCCGTTCTTTA 1211
||| |||||||| ||||||| |||| |||||| ||||||||||||||||| |||||||
Sbjct 1130 CTCGTGGTGTATTTAATGATGGATATTCGACTTTCGGGGTGGAGATTTTCCCCTTCTTTA 1189
Query 1212 CTGAGTTAACTGGTCTTTTGTTGAATGAGTTAGCT-CAGAATTCAGGGCCTAGTTTCTGT 1270
| |||||||||||||||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct 1190 CCGAGTTAACTGGTCTTTTGGTGAATGAGTTAG-TCCAGAATTCAGGTCCAAGTTTCTGT 1248
Query 1271 GACTTTCAGAAAGTTTCTTCCTTTTGGCAACAATTGAGGAAAGTCATTGAACTCAAAGTT 1330
|||||||| ||| ||||||||||||||||||| |||||||| | ||||||| |||||| |
Sbjct 1249 GACTTTCATAAATTTTCTTCCTTTTGGCAACAGTTGAGGAAGGCCATTGAATTCAAAGAT 1308
Query 1331 GCCTTTC-CCATTCCCATTGTGTTACCTATGCAAAGTACTGCATTGGAGGCGGAGATCAG 1389
| || | | ||||||| ||| |||||| || ||||||| ||||||| |||||||||||
Sbjct 1309 G-CTGACTCGATTCCCAATGTTTTACCTCCGCGAAGTACTCCATTGGAAGCGGAGATCAG 1367
Query 1390 ACATCTTCATCGGTTATTTGGAAGCTTGTTGACGACTATGGACCTTTGTATGTGTAGGGT 1449
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1368 ACATCTTCATCAGTTATTTGGAAGCTTGTTGACGACAATGGACCTTTGTATGTGTAGGGT 1427
Query 1450 CGAGTCTTCGTTGGCTGATAAAGAAGTTGGAAACAGTGAAACTATGTCTTCATCGTGGTC 1509
|| | | |||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 1428 TGA------G-T--CTGACAAAGAAGTTGGAAACAGTGAAACTGTATCTTCATCGTGGTC 1478
Query 1510 TCAGTATCTTTCCATTCTGAAGATTATCAATTCAATGTCTAACATTTATCAAGGTGCTAA 1569
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1479 TCAATATCTATCCATTCTGAAGATTATCAATTCAATGTCTAACATCTATCAAGGTGCTAA 1538
Query 1570 GGGACAGCTAGCTGTTATGTTAAATAAAAACAAGGTTTCATTCTCCGCCCTCGTTGTGAA 1629
|||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||||
Sbjct 1539 GGGACAGCTAGCTGTTATGTTAAATAAAAATAAGGTTTCATTCTGCGTCCTCCTTGTGAA 1598
Query 1630 ATTTGCTAAAAGAGGAGATGACCACCAATGGATCTTTGAGTATAAGGAAGCTACCAACTT 1689
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1599 ATTTGCTAAAAGAGGAGATGACCACCAATGGGTCTTTGAGTATAAGGAAGCTACCAACTT 1658
Query 1690 TGAAGCTAGGAGGCATTTGGCAATGCTCTTGTTTCCTGACGTGAAAGAAGACTTTGAGGA 1749
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1659 TGAAGCTAGGAGGCATTTGGCAATGCTGTTGTTTCCTGACGTGAAAGAAGACTTTGAGGA 1718
Query 1750 GATGCACGAAATGCTCATTGATCGGTCCAATTTGCTATCAGAATCATTTGAGTACATAGT 1809
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1719 GATGCACGAAATGCTCATTGATCGGTCCAATTTGCTATCAGAATCGTTTGAGTACATAGT 1778
Query 1810 GGGCGCAAGCCCTGAAGCACTTCATGGTGGACTGTTCATGGAATTCAAGAATGAGGAAGC 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 GGGCGCAAGCCCTGAAGCACTTCATGGTGGACTGTTCATGGAATTCAAGAATGAGGAAGC 1838
Query 1870 TACAGGTCCTGGTGTTCTACGAGAATGGTTCTATCTGGTATGTCAGGAGATATTCAATCC 1929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 TACAGGTCCTGGTGTTCTACGAGAATGGTTCTATCTGGTATGTCAGGAGATATTCAATCC 1898
Query 1930 AAAAAATACCCTCTTCCTTCGATCTGCTGATGATTTTAGAAGATTCTCTCCAAACCCAGC 1989
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 AAAAAATACCCTCTTTCTTCGATCTGCTGATGATTTTAGAAGATTCTCTCCAAACCCAGC 1958
Query 1990 ATCCAAGGTGGATCCATTGCATCCTGACTTCTTCGAGTTCACGGGTCGTGTGATTGCCTT 2049
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1959 ATCCAAGGTGGATCCATTGCATCCTGATTTCTTCGAGTTCACCGGTCGTGTGATTGCCTT 2018
Query 2050 AGCTTTGATGCACAAAGTTCAAGTGGGTGTGCTGTTCGATCGTGTTTTCTTCTTACAATT 2109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 AGCTTTGATGCACAAAGTTCAAGTGGGTGTGCTGTTCGATCGTGTTTTCTTCTTACAATT 2078
Query 2110 GGCCGGACTGAAAATATCTTTGGAAGATATTAAGGACACCGATCGAATTATGTACAATAG 2169
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2079 GGCTGGACTGAAAATTTCTTTGGAAGATATTAAGGACACCGATCGAATTATGTACAATAG 2138
Query 2170 CTGCAAACAGATTCTGGAAATGGATCCAGAGTTTTTCGATTCAAACGCAGGCCTTGGTCT 2229
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 2139 CTGCAAACAGATTCTGGAAATGGATCCAGTGTTTTTCGATTCAAACGCCGGCCTTGGTCT 2198
Query 2230 AACATTCGTGTTGGAAACCGAGGAGCTGGGAAAGAGGGATACGATAGAGCTATGTCCAGA 2289
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2199 AACATTCGTGTTGGAAACCGAGGAGCTGGGAAAGAGGGATACAATAGAGCTATGTCCAGG 2258
Query 2290 CGGGAAACTCAAGGCTGTTAACAGCAAGAACAGGAAACAATACGTCGATCTCCTCATCGA 2349
||||||| |||||||||| |||||| |||||||||||||||| ||||||||||| |||||
Sbjct 2259 CGGGAAATTCAAGGCTGTCAACAGCGAGAACAGGAAACAATATGTCGATCTCCTTATCGA 2318
Query 2350 ACGCCGATTTGCCACACCAATCTTGGAGCAAGTAAAACAATTTTCTCGAGGTTTCACTGA 2409
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2319 ACGCCGATTTGCCACACCAATCTTTGAGCAAGTAAAACAATTTTCCCGAGGTTTCACTGA 2378
Query 2410 TATGCTATCACATTCTGTACCGCCCAGATCATTTTTCAAGAGATTATACCTAGAGGATCT 2469
|||||| || ||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 2379 TATGCTTTCGGATTCTGTACAGCCCAGATCCTTTTTCAAGAGATTATACCTAGAGGATCT 2438
Query 2470 GGATGGAATGCTTCGAGGAGGAGAAAACCCGATAAGCATAGATGATTGGAAAGCGCATAC 2529
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2439 CGACGGAATGCTTCGAGGAGGAGAAAACCCGATAAGCATAGATGATTGGAAAGCACACAC 2498
Query 2530 AGAATACAACGGATTCAAAGAGACTGATCGCCAAATAGACTGGTTCTGGAAGATTCTGAA 2589
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2499 AGAATACAACGGATTCAAAGAGACCGATCGCCAAATAGACTGGTTCTGGAAGATTCTGAA 2558
Query 2590 GAAAATGACAGAGGAAGAACAGAGGAGTATACTGTTCTTTTGGACATCGAATAAGTTTGT 2649
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2559 GAAAATGACAGAAGAAGAACAGAGGAGTATACTGTTCTTTTGGACATCGAATAAGTTTGT 2618
Query 2650 ACCAGTGGAAGGGTTTAGAGGATTATCATCAAAGCTTTATATCTACAGATTATATGAAGC 2709
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2619 ACCGGTGGAAGGGTTTAGAGGATTATCATCAAAGCTTTATATCTACAGATTATATGAAGC 2678
Query 2710 TAATGATCGTCTTCCATTGTCTCATACTTGCTTTTACCGTCTCTGTATACCGAGATACCC 2769
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2679 TAATGATCGTCTTCCATTGTCTCATACTTGCTTTTACCGTCTCTGTATACCAAGATACCC 2738
Query 2770 GACGATTACTCTCATGGAACAACGCCTCCGACTCATCGCTCAAGATCATGTCAGCTCCAG 2829
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 GACGATGACTCTCATGGAACAACGCCTCCGACTCATCGCTCAAGATCATGTCAGCTCCAG 2798
Query 2830 TTTCGGTAAATGGTGAAATAATTATCAAAGTAATTTCTATCTtc 2873
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2799 TTTCGGTAAATGGTGAAATAATTATCAAAGTAATCTCTATCTTC 2842
Score = 204 bits (110), Expect = 4e-51
Identities = 121/126 (96%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 2902 TCTCTCAGTCTGATCTTTAGGGTTCGTAGATTGGTGCTTTTGGTGTATAGATTTAGTGTT 2961
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2838 TCT-TCAATCTGATCTTTAGGGTTCGTAGATTGGTGCTTTTGGTGTATAGATTTAGCGTT 2896
Query 2962 ATGGTCATGCCTCTGTTTATGACCGGAAGATTTCTTAACTTCTGTTTTTAACTTATGGAT 3021
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2897 ATGGTCAAGCCTCTGTTTATGACCGAAAGATTTCTTAACTTCTGTTTTTAACTTATGGAT 2956
Query 3022 AAATTA 3027
||||||
Sbjct 2957 AAATTA 2962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117546496070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5