BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G12580.1

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490059 jgi|Araly1|490059|fgenesh2_kg.6__3193__AT4G12580.1         331    3e-90


> Ahg490059 jgi|Araly1|490059|fgenesh2_kg.6__3193__AT4G12580.1
Length=348

 Score =  331 bits (179),  Expect = 3e-90
 Identities = 217/236 (92%), Gaps = 0/236 (0%)
 Strand=Plus/Plus

Query  116  ATCGATTTTTTCCCACAGGTTGAGAAGATAGTATCAAACACAGAAGAGAAGACAACAACC  175
            ||||||||||| |  ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  76   ATCGATTTTTTACTGCAGGTTGAGAAGATAGTATCAAACACAGAAGAGAAGACATCAACC  135

Query  176  GAGACGCCTAAGAAAACCGTTCATGCAGATGATTCAGCCACTGTGGTTGAAGTTGAAATC  235
            ||||| |||||| ||| |||| ||||||||||||||||||| | ||||||||||||||||
Sbjct  136  GAGACACCTAAGGAAATCGTTTATGCAGATGATTCAGCCACCGCGGTTGAAGTTGAAATC  195

Query  236  AAAGGAGAAGAAGTACCAAATGTAGAGAATGAAACTGAAAAAACCGAGATAGCTCCGGTT  295
            |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct  196  AAAGGAGAAGAAGTACTAAAGGTAGAGAATGAAACTGAAAAAACCGAGACAGCTCCGGTT  255

Query  296  AAAGAGGAGAAACCAGTTGTAATTACAGCAGTTGTGGAGGAGAAAGATGGTAAACC  351
            ||||||||||||||||||| |||| | |||| | ||||||||||||||| ||||||
Sbjct  256  AAAGAGGAGAAACCAGTTGAAATTCCGGCAGCTATGGAGGAGAAAGATGCTAAACC  311


 Score =  117 bits (63),  Expect = 8e-26
 Identities = 71/75 (95%), Gaps = 0/75 (0%)
 Strand=Plus/Plus

Query  10  TATCTCCATGTGATAATCTTTAGTTTGTTTTCGAAAGCTCAGTTTTTGTAGATTTTGTTA  69
           |||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  1   TATCACCATGTGATAGTCTTCAGTTTTTTTTCGAAAGCTCAGTTTTTGTAGATTTTGTTA  60

Query  70  GTAGTTAGCTTTGAT  84
           |||||||||||||||
Sbjct  61  GTAGTTAGCTTTGAT  75



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18390993898


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5