BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12590.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943174 jgi|Araly1|943174|scaffold_603718.1 1319 0.0
Ahg945888 jgi|Araly1|945888|scaffold_702117.1 867 0.0
> Ahg943174 jgi|Araly1|943174|scaffold_603718.1
Length=787
Score = 1319 bits (714), Expect = 0.0
Identities = 761/784 (97%), Gaps = 2/784 (0%)
Strand=Plus/Plus
Query 91 agagagaTAATTAGGGTTTAGAATGGCGGAGGATCTAGTTCTCGATACGGCGATCAGAGA 150
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 4 AGAGAGATAATTAGGGCTTAGAATGGCGGAGGATCTAGTTCTGGATACGGCGATCAGAGA 63
Query 151 TTGGGTTCTGATTCCTCTCTCCGTAGTGATGGTTCTAATCGGTATTTTGAGATACTTTGT 210
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 64 TTGGGTTCTGATTCCTCTCTCCGTTGTGATGGTTCTAATTGGTATTTTGAGATACTTTGT 123
Query 211 CTCTAAGCTTATGCGTTCTACTCCAACTCCTGATGCTAAGATGGTTAAAGAAGGGCAAGT 270
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTCTAAGCTTATGCGTTCTTCTCCAACTCCTGATGCTAAGATGGTTAAAGAAGGGCAAGT 183
Query 271 TGTTATTAGAGCTCGGAATCTTAAAGTCGGTGCTAATTTTATCCCGCCGAAATCATTCCG 330
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 184 TGTTATCAGAGCTCGGAATCTTAAAGTCGGTGCTAATTTTATCCCGCCGAGATCATTCCG 243
Query 331 TGCTCGGAGATTCTACTTCAGCAACGAGGAGAATGGTTTGCTACATGTTCCCAAGGGAGA 390
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TACTCGGAGATTCTACTTTAGCAACGAGGAGAATGGTTTGCTACATGTTCCCAAGGGAGA 303
Query 391 AGCTCAAAATCCACAAGCTGCTATGTTTTCTGATCCTAACATGGCCATGGATATGATGAA 450
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGCTCAAAATCCACAAGCTGCCATGTTTTCTGATCCTAACATGGCCATGGATATGATGAA 363
Query 451 GAAAAATCTTTCTATGATTATTCCTCAGACACTCACTTTTGCATGGGTCAACTTCTTCTT 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GAAAAATCTTTCTATGATTATTCCTCAGACACTCACTTTTGCATGGGTCAACTTCTTCTT 423
Query 511 CTCTGGATTTGTTGCAGCCAAAATACCATTTCCACTGACTCAGAGGTTCAGATCAATGTT 570
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 424 CTCTGGATTTGTTGCAGCGAAGATACCATTTCCACTAACTCAGAGGTTCAGATCAATGTT 483
Query 571 ACAGAATGGCATTGACTTGAGCACTGTCGATGTTAGCTATGTGAGTAGTCGTTCCTGGTA 630
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 484 ACAGAATGGCATTGACTTGAGCACTGTCGATGTTAGCTACGTGAGTAGTCGTTCCTGGTA 543
Query 631 CTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATGC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATGC 603
Query 691 CATTGATGACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGAG 750
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GATTGATGACACACAACGTATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGAG 663
Query 751 TCTGGGTGCAGAGAAGGATGGT-TTAGACATAATCCAGCACGAATGGGCACTACCTCGAT 809
||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||
Sbjct 664 CCTGGGTGCAGAGAAGGATGGTCTT-GACATAATTCAGCACGAATGGGCTCTACCTCGAT 722
Query 810 TTGAGCAGCGCGCAGAATCTGTATTAAGAAAACTCGTGAAGTAGAGAGAAACACGATAAG 869
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 723 TTGAGCAACGCGCAGAATCTGTATTAAGAAAACTCGTGAAGTAGAGAGAAACGCGATAAG 782
Query 870 GTTT 873
|||
Sbjct 783 ATTT 786
> Ahg945888 jgi|Araly1|945888|scaffold_702117.1
Length=781
Score = 867 bits (469), Expect = 0.0
Identities = 651/740 (88%), Gaps = 8/740 (1%)
Strand=Plus/Plus
Query 112 AATGGCGGAGGATCTAGTTCTCGATACGGCGATCAGAGATTGGGTTCTGATTCCTCTCTC 171
||||||||| ||||| ||||| |||||||| ||||||||||||||| |||| ||||||||
Sbjct 20 AATGGCGGAAGATCTGGTTCTTGATACGGCCATCAGAGATTGGGTTTTGATCCCTCTCTC 79
Query 172 CGTAGTGATGGTTCTAATCGGTATTTTGAGATACTTTGTCTCTAAGCTTATGCGTTCTAC 231
||| || |||||||| || || ||| | | ||||| || |||||||| ||||| ||| |
Sbjct 80 CGTCGTTATGGTTCTTATTGGAATTCTCCGTTACTTCGTATCTAAGCTCATGCGATCTTC 139
Query 232 TCCAACTCCTGATGCTAAGATGGTTAAAGAAGGGCAAGTTGTTATTAGAGCTCGGAATCT 291
||| ||||| ||||| |||||||| |||||||| |||||||| ||||| ||| ||||| |
Sbjct 140 TCCGACTCCAGATGCGAAGATGGTCAAAGAAGGACAAGTTGTGATTAGGGCTAGGAAT-T 198
Query 292 TAAAGTC-GGTGCTAATTTTATCCCGCCGAAATCATTCCGTGCTCGGAGATTCTACTTCA 350
| ||| | |||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 199 TGAAGGCTGGTGCTAATTTTATCCCGCCTAAATCGTTCCGAGCTCGGAGATTCTACTTTA 258
Query 351 GCAACGAGGAGAATGGTTTGCTACATGTTCCCAAGGGA-GAAGCTCAAAATCCACAAGCT 409
|||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||||| |||||
Sbjct 259 GCAATGAGGAAAATGGATTGTTACATGTTCCCAA-GGACCAAGCTCAAAATCCTCAAGC- 316
Query 410 GC-TATGTTTTCTGATCCTAACATGGCCATGGATATGATGAAGAAAAATCTTTCTATGAT 468
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 317 CCAGATGTTTTCTGATCCTAACATGGCCATGGATATGATGAAGAAAAATCTGTCAATGAT 376
Query 469 TATTCCTCAGACACTCACTTTTGCATGGGTCAACTTCTTCTTCTCTGGATTTGTTGCAGC 528
||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 377 TATACCACAGACGCTCACTTTTGCATGGGTCAACTTCTTCTTCTCTGGGTTTGTTGCAGC 436
Query 529 CAAAATACCATTTCCACTGACTCAGAGGTTCAGATCAATGTTACAGAATGGCATTGACTT 588
||||||||||||||| ||||||||||||||||| || |||||||||||||| || ||| |
Sbjct 437 CAAAATACCATTTCCGCTGACTCAGAGGTTCAGGTCTATGTTACAGAATGGAATCGACCT 496
Query 589 GAGCACTGTCGATGTTAGCTATGTGAGTAGTCGTTCCTGGTACTTCTTGAACTTGTTTGG 648
||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||||||
Sbjct 497 GAGCACTGTTGATGTTAGCTACGTGAGCAGCCGTTCATGGTACTTCTTAAACTTGTTTGG 556
Query 649 ATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATGCCATTGATGACACACAACG 708
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 557 ATTAAGAGGCTTATTCAGTCTCATTCTTGGAGATGAAAATGCAATTGATGACACACAACG 616
Query 709 TATGATGCAAATGGGTGGGTTTGGATTTGATGCATCAAAGAGTCTGGGTGCAGAGAAGGA 768
||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||
Sbjct 617 AATGATGCAAATGGGTGGATTTGGTTTTGATGCATCAAAGAGCCTAAGTGCAGAGAAGGA 676
Query 769 TGGTTTAGACATAATCCAGCACGAATGGGCACTACCTCGATTTGAGCAGCGCGCAGAATC 828
|||| | |||||||| || || |||||||| ||||||||||| ||||| || ||||||||
Sbjct 677 TGGTCTCGACATAATTCAACATGAATGGGCTCTACCTCGATTCGAGCACCGGGCAGAATC 736
Query 829 TGTATT-AAGAAAACTCGTG 847
|| || || |||||| |||
Sbjct 737 CGTTTTGAA-AAAACTTGTG 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5