BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12610.2
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327370 jgi|Araly1|327370|fgenesh1_pm.C_scaffold_6002590 2632 0.0
> Ahg327370 jgi|Araly1|327370|fgenesh1_pm.C_scaffold_6002590
Length=1860
Score = 2632 bits (1425), Expect = 0.0
Identities = 1564/1631 (96%), Gaps = 9/1631 (1%)
Strand=Plus/Plus
Query 106 ATGTCGAACTGTTTGCAATTGAATA-CGTCTTGTGTTGGTTGCGGATCACAATCCGATTT 164
||||||||||||||||||||||| | || ||||| | || || |||||||||||||||||
Sbjct 1 ATGTCGAACTGTTTGCAATTGAA-ACCGGCTTGTATGGGATGTGGATCACAATCCGATTT 59
Query 165 ATATGGAAGCTCTTGTAGACACATGACGTTGTGTTTGAAGTGTGGTAGAACCATGGC-GC 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 GTATGGAAGCTCTTGTAGACACATGACGTTGTGTTTGAAGTGTGGTAGAACCATGGCTG- 118
Query 224 AGAATAAATCTAAGTGTCACGAGTGTGGAACCGTCGTTACACGTTTGATTCGGGAGTATA 283
|||||||| ||||||||| ||| |||||||||||| |||| |||||||||||||||||||
Sbjct 119 AGAATAAAGCTAAGTGTCTCGATTGTGGAACCGTCCTTACGCGTTTGATTCGGGAGTATA 178
Query 284 ACGTTCGTGCTGCGGCACCTACGGATAAGAACTACTTCATTGGTAGATTTGTGACTGGTC 343
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ACGTTCGTGCTGCGGCACCGACGGATAAGAACTACTTCATTGGTAGATTTGTGACTGGTC 238
Query 344 TTCCTAATTTCAAGAAAGGTTCTGAGAATAAATGGTCTCTTCGTAAAGATATACCGCAAG 403
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCCAAATTTCAAGAAAGGTTCTGAGAATAAATGGTCTCTTCGTAAAGATATACCGCAAG 298
Query 404 GTCGTCAGTTTACAGATGCACAACGGGAGAAGTTAAAGAACAAACCTTGGATCTTGGAAG 463
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTCGTCAGTTTACCGATGCACAACGGGAGAAGTTAAAGAACAAACCTTGGATCTTGGAAG 358
Query 464 ATGAAACTGGACAGTTTCAGTACCAGGGACATCTTGAAGGCTCTCAGTCTGCTACTTACT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATGAAACTGGACAGTTTCAGTACCAGGGACATCTTGAAGGCTCTCAGTCTGCTACTTACT 418
Query 524 ATCTCTTAGTGATGCAGAACAAAGAGTTTGTTGCGATTCCTGCTGGTTCTTGGTATAACT 583
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 ATCTCTTAGTGATGCAGAACAAAGAGTTTGTCGCGATTCCTGCTGGTTCTTGGTATAACT 478
Query 584 TCAACAAGGTTGCACAGTATAAGCAACTTACATTGGAAGAAGCGGAAGAGAAGATGAAGA 643
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 TTAACAAGGTTGCACAGTATAAGCAACTTACATTGGAAGAAGCAGAAGAGAAGATGAAGA 538
Query 644 ATCGGAGAAAAACGGCTGATGGTTATCAAAGGTGGATGATGAAAGCTGCGAATAATGGTC 703
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCGGAGAAAAACTGCTGATGGTTATCAAAGGTGGATGATGAAAGCTGCGAATAATGGTC 598
Query 704 CAGCGTTGTTTGGAGAAGTGGATAATGA-AAAGGAGAGCGGTGGAACCAGTGGAGGTGGT 762
|||||||||||||||||||||||||||| |||| |||| ||||||| ||| |||||||||
Sbjct 599 CAGCGTTGTTTGGAGAAGTGGATAATGACAAAG-AGAGTGGTGGAAGCAGCGGAGGTGGT 657
Query 763 GGTAGGGGTCGTAAGAAGTCATCAGGCGGTGATGAAGAGGAAGGAAATGTTTCTGACAGA 822
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 658 GGTAGGGGTCGTAAAAAGTCATCAGGTGGTGATGAAGATGAAGGAAATGTCTCTGACAGA 717
Query 823 GGGGATGAAGATGAAGAGGAAGAGGCGTCACGGAAAAGTAGACTTGGACTTAATAGAAAG 882
||||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 718 GGGGAGGAAGATGAAGAGGAAGAGGCATCTCGGAAAAGTAGACTTGGACTTAATAAAAAG 777
Query 883 AGTAatgatgatgatgatgaagaaggtccaaggggtggtgatcttgacatggatgatgat 942
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGTAATGATGATGATGA--A-GAAGGTCCAAGGGGTGGTGATCTTGACATGGATGATGAT 834
Query 943 gacattgaGAAGGGGGATGACTGGGAGCACGAGGAAATTTTCACGGATGATGATGAAGCA 1002
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 835 GACATTGAGAAGGGGGATGACTGGGAGCATGAGGAAATTTTCACCGATGATGACGAAGCA 894
Query 1003 GTCGGTAATGATCCTGAGGAACGTGAAGACCTTCTGGCTCCTGAAATTCCTGCTCCTCCA 1062
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 895 GTCGGTAATGATCCTGAGGAACGTGAAGATCTTCTGGCTCCTGAAATTCCTGCTCCTCCA 954
Query 1063 GAAATAAAGCAGGATGAGGATGATGAAGAAAATGAAGAAGAGGAGGGAGGTTTGAGCAAA 1122
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 955 GAAATAAAGCAGGATGAAGATGATGAAGAAAATGAAGAAGAGGAGGGAGGGTTGAGCAAA 1014
Query 1123 TCTGGTAAAGAGTTGAAGAAACTGCTTGGTAAGGCTAATGGTTTGGACGAATCtgatgaa 1182
|||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1015 TCTGGTAAAGAGTTAAAGAAACTGCTTGGTAAGGCTAATGGTTTGAATGAATCTGACGAA 1074
Query 1183 gacgatgatgatgattctgatgatgaGGAGGAGACAAACTACGGTACAGTTACGAACTCA 1242
||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 1075 GACGATGATGACGATTCTGATGATGAGGAGGAGACAAACTTTGGTCCAGTTACGAATTCA 1134
Query 1243 AAACAGAAGGAGGCGGCGAAAGAAGAACCTGTTGATAATGCACCTGCAAAACCTGCACCA 1302
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1135 AAACAGAAGGAGGTGGCGAAAGAAGAACCTGTTGAAAATGCACCTGCAAAACCTACACCA 1194
Query 1303 TCTGGACCTCCTCGTGGAACACCTCCTGCAAAACCATCCAAGGGAAAGAGAAAACTAAAC 1362
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1195 TCTGGACCTTCTCGTGGAACACCTCCTGCAAAACCATCTAAGGGAAAGAGAAAACTAAAC 1254
Query 1363 GACGGCGATTCTAAAAAGCCTAGCAGCTCTGTTCAAAAGAAAGTGAAGACTGAAAATGAT 1422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GATGGCGATTCTAAAAAGCCTAGCAGCTCTGTTCAAAAGAAAGTGAAGACTGAAAATGAT 1314
Query 1423 CCGAAATCTTCTTTGAAAGAAGAGAGAGCAAACACAGTTTCCAAATCCAACACACCAACA 1482
|| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CCAAAATCTTCGGTAAAAGAAGAGAGAGCAAACACAGTTTCCAAATCCAACACACCAACA 1374
Query 1483 AAAGCTGTGAAAGCTGAACCAGCTTCAGCTCCTGCATCATCATCCTCAGCTGCGACTGGG 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1375 AAAGCTGTGAAAGCTGAACCAGCTTCAGCTCCTGCATCATCATCCTCAGCTGCAACTGGG 1434
Query 1543 CCTGTGACTGAAGATGAAATCCGCGCTGTTCTGATGGAAAAGAAGCAAGTCACTACACAG 1602
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1435 CCTGTGACTGAAGACGAAATCCGCGCTGTTCTGATGGAGAAGAAGCAAGTCACTACACAG 1494
Query 1603 GATCTTGTTTCCAGGTTTAAGGCAAGACTTAAGACCAAAGAGGACAAGAATGCCTTTGCC 1662
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GACCTTGTTTCCAGGTTTAAGGCAAGACTTAAGACCAAAGAGGACAAGAATGCCTTTGCC 1554
Query 1663 AATATTCTGAGGAAGATCTCAAAGATACAGAAGAACGCTGGTTCTCAAAACTTCGTCGTT 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AATATTCTGAGGAAGATCTCAAAGATACAGAAGAACGCTGGTTCTCAAAACTTCGTCGTT 1614
Query 1723 TTGAGAGAAAA 1733
|||||||||||
Sbjct 1615 TTGAGAGAAAA 1625
Score = 276 bits (149), Expect = 5e-73
Identities = 202/227 (89%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 1783 ATCC-GATCTAATCTTCAACCACGCAAGATGGAACTTGTGACTGAAGACGAAATCCGCAA 1841
|||| | ||||| | |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1632 ATCCTGTTCTAACCGTCAACCACGCAAGATGGAACATGTGACTGAAGACGAACTCCGCAG 1691
Query 1842 AGTTCTGATGGAGA-AGAAGCAATTAACTACACTGGAACTTGTTATGAGGTTTAAGGAAA 1900
||| | ||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 TGTTTTAATGGAGACA-AAACAATTAACTACACTGGAACTTGTTATGAGGTTTAAGGAAA 1750
Query 1901 GACTTACAACCACAGAGGACAAGGATTCCTTTTCCCATATTCTCAAGAAGATCGCAAAGT 1960
|||||||||||| |||||| |||||| | ||| |||||||||||||||||||||||||||
Sbjct 1751 GACTTACAACCAGAGAGGAAAAGGATACATTTGCCCATATTCTCAAGAAGATCGCAAAGT 1810
Query 1961 TACAGAAGAACCCTGGTTCTGAAAAGT-TTGTTGTTGTTTTGAGAGA 2006
||||||| ||| |||||||| ||||| || || |||||||||||||
Sbjct 1811 TACAGAAAAACGCTGGTTCTCTAAAGTATT-TTCTTGTTTTGAGAGA 1856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77285107105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5