BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12617.1
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943178 jgi|Araly1|943178|scaffold_603722.1 496 7e-140
Ahg943179 jgi|Araly1|943179|scaffold_603723.1 424 3e-118
> Ahg943178 jgi|Araly1|943178|scaffold_603722.1
Length=423
Score = 496 bits (268), Expect = 7e-140
Identities = 348/385 (90%), Gaps = 11/385 (3%)
Strand=Plus/Plus
Query 1 ATGGCAGGTAATAGGTATTTTGAAGATCAGCCGTATGAGGTAGAAAACCCTTTTAACATC 60
||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 29 ATGGCAGATAATAGGTATTTTGAAGATCAGCCGTACGAGGTAGAAAACCCATTTAACATC 88
Query 61 ATGATAACGTTGTCACCATTTGACATAGATTTGAGTACTACGATAATGATGCCAAAAACG 120
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 89 ATGATAACGTTGTCACCATTTGACATAGATTTGAGTACTACGTTATTGGTGCCAAAAACG 148
Query 121 TTACTAGAGGCCAACTTATTTCGTTTCATGGATATAAGTTATCTCGTCGGATTGTTACAA 180
|||||||| ||||||||||||| |||| | |||||||||| |||||||| ||||||||||
Sbjct 149 TTACTAGAAGCCAACTTATTTCCTTTCTTTGATATAAGTTTTCTCGTCGAATTGTTACAA 208
Query 181 GTTCCTAACAAGCCAAAGGTGATTGAACTTTTTGATATTGATACCAAAATTACAACATTT 240
|||| ||||||| | | | ||| ||||||| |||||||| |||||||||||||||
Sbjct 209 GTTCGTAACAAG--A----T--T-GAAGTTTTTGACATTGATACTAAAATTACAACATTT 259
Query 241 CTTACCATAAGAAGA-GATGGAGATAATTTCAAATTCCATGGATGGAATAATATTCTCGA 299
|||||||| | |||| |||||| ||||||||||||| | ||| |||||||||||||||||
Sbjct 260 CTTACCATGA-AAGAAGATGGAAATAATTTCAAATTTCGTGGGTGGAATAATATTCTCGA 318
Query 300 ACGAAAACATTACAAGGCAGGCGATGTTATTGCATTTTGGTGGGATCTTCATCACACTAG 359
|||||||||||||| |||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 319 ACGAAAACATTACAGGGCAGGCGATACTCTTGCATTTTGGTGGGATCTCCATCACACTAG 378
Query 360 ACTTAATTTCAAACATGTTGCTTAG 384
|||||||||||||||||||||||||
Sbjct 379 ACTTAATTTCAAACATGTTGCTTAG 403
> Ahg943179 jgi|Araly1|943179|scaffold_603723.1
Length=415
Score = 424 bits (229), Expect = 3e-118
Identities = 320/364 (88%), Gaps = 6/364 (2%)
Strand=Plus/Plus
Query 24 AGATCAGCCGTATGAGGTAGAA-AACCCTTTTAACATCATGATAACGTTGTCACCATTTG 82
|||| |||||||||||| | || ||||| |||||||||||||||||||||||||||||
Sbjct 35 AGATAAGCCGTATGAGGCA-AACAACCCACATAACATCATGATAACGTTGTCACCATTTG 93
Query 83 ACATAGATTTGAGTACTACGATAATGATGCCAAAAACGTTACTAGAGGCCAACTTATTTC 142
|| | ||| ||||||||||||| |||||||||||| |||||||||| |||| |||||||
Sbjct 94 ACGTCGATATGAGTACTACGATCATGATGCCAAAAGCGTTACTAGAAACCAATTTATTTC 153
Query 143 GTTTCATGGATATAAGTTA-TCTCGTCGGATTGTTACAAGTTCCTAACAAGCCAAAGGTG 201
||||||||| |||||| | |||||||| | ||||||||||||| |||||||||||| ||
Sbjct 154 CTTTCATGGAGATAAGT-ACTCTCGTCGAACTGTTACAAGTTCCCAACAAGCCAAAGATG 212
Query 202 ATTG-AACTTTTTGATATTGATACCAAAATTACAACATTTCTTACCATAAGAAGAGATGG 260
|||| || ||| ||||||||||| ||||||||||||||| ||| ||||| || ||||||
Sbjct 213 ATTGGAA-TTTATGATATTGATAGTAAAATTACAACATTTGTTATCATAAAAAAAGATGG 271
Query 261 AGATAATTTCAAATTCCATGGATGGAATAATATTCTCGAACGAAAACATTACAAGGCAGG 320
| ||||||| ||||| |||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 272 AAATAATTTTAAATTTCATGGATGGAATGATATTCTCCTACGAAAACATTACAAAGCAGG 331
Query 321 CGATGTTATTGCATTTTGGTGGGATCTTCATCACACTAGACTTAATTTCAAACATGTTGC 380
|||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 332 CGATACTATTGCATTTTGGTGGGATCTTCGTCATACTAGACTTAATTTCAAACAGGTTGC 391
Query 381 TTAG 384
||||
Sbjct 392 TTAG 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13736012040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5