BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12620.1
Length=2608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490065 jgi|Araly1|490065|fgenesh2_kg.6__3199__AT4G12620.1 3688 0.0
Ahg493435 jgi|Araly1|493435|fgenesh2_kg.7__2868__AT4G14700.1 1367 0.0
> Ahg490065 jgi|Araly1|490065|fgenesh2_kg.6__3199__AT4G12620.1
Length=2458
Score = 3688 bits (1997), Expect = 0.0
Identities = 2318/2470 (94%), Gaps = 33/2470 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCAACTCCAAGAGCAAAAACCTTCAAATCCCCAACCAAAACTCCGTCTAACATC 60
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1 ATGGCTTCGACTCCAAGAGCAAAAACCTTCAAATCCCCAACCAAAACACCGACTAACATC 60
Query 61 TATCGCAAATCGTATCTATCTCCATCTTCAACCTCACACACTCCTCAAACCCCAGAAACT 120
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TATCGCAAATCGTATCTATCACCATCTTCAACCTCACTCACTCCTCAAACCCCAGAAACT 120
Query 121 C-ACACTCCTCTCCGTAGATCTGCTCGTCATGTTTCTCGTAAAATCGATCTGGGAAATGA 179
| | |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 121 CTA-ACTCCTCTTCGTAGATCCGCTCGTCATGTTTCTCGAAAAATCGATCTGGGAAATGA 179
Query 180 CCCAATTGATGCTCCAGGAA-ATGACCCAATCGAAGGAATGAATCTAATTCGAAAACGAG 238
|||||| |||| |||||||| | || ||||||||| |||||||||||||||||||||||
Sbjct 180 CCCAATCGATGTTCCAGGAAGA-GAATCAATCGAAGAAATGAATCTAATTCGAAAACGAG 238
Query 239 AACGTGCCCCCAGAAAACCAACCACTGATGTCGTTCCATCgaagtcgaagaaaacagaaa 298
|||| || || |||||||||||||||||||| |||||| |||||||| |||| ||||||
Sbjct 239 AACGAGCGCCGAGAAAACCAACCACTGATGTTGTTCCAGAGAAGTCGACGAAATCAGAAA 298
Query 299 ctccgaagaagaagaagaagaT--A----G-A--TTCCTTCACTCCTGTTTCACCAATTA 349
|||||||||||||||||||||| | | | ||||||| |||||||||| ||||||
Sbjct 299 CTCCGAAGAAGAAGAAGAAGATCGATTCGGAAGTTTCCTTCTCTCCTGTTTCTCCAATTC 358
Query 350 GATCTGAGACGATTaagaagacgaagaagaagaagagaGTTTATTACAATAAAGTCGAAT 409
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 359 GATCTGAGACGATTAAGAAGAC---GATTAAGAAGAGAGTTTATTACAATAAAGTCGAAT 415
Query 410 TCGACGAAACCGAATTCGAAATCGGTGATGATGTTTA-CGTTaagagaagagaagattcg 468
|||| |||||||||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 416 TCGATGAAACCGAATTCGAAATCGGTGATGATGTTTATC-TTAAGAGAAGAGAAGACGCG 474
Query 469 aattcagatgaagaagaagatccagaaattgaagattgtcagattTGTTTCAAATCAGAT 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 475 AATTCAGATGAAGAAGAAGATCCAGAAATTGAAGATTGTCAGATTTGTTTCAAATCGGAT 534
Query 529 ACTAACATAATGATTGAGTGTGATGATTGTTTAGGTGGATTTCATTTGAAATGCTTGAAA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ACTAACATAATGATTGAGTGTGATGATTGTTTAGGTGGATTTCATTTGAAATGCTTGAAA 594
Query 589 CCGCCATTGAAGGAAGTTCCTGAAGGTGATTGGATCTGTCAATTCTGTGAGGTTAAAAAG 648
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 595 CCGCCGTTGAAGGAAGTTCCAGAAGGTGATTGGATCTGTCAATTTTGTGAGGTTAAAAAG 654
Query 649 TCTGGTCAAAGTCAAACACTTGACCTTCCTAAGCCACCGGAAGGGAAGAAGTTAGCGAGA 708
|| ||||||| | |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 655 TCAGGTCAAA--C-AACACTTGTGGTTCCTAAGCCACCGGAAGGGAAGAAATTAGCGAGA 711
Query 709 ACTATGAGGGAGAAGCTACTTTCCGGTGATCTATGGGCTGCTCGAATCGACAAGTTATGG 768
|| |||||||||||||| |||||||||||| ||||||| ||||||||||| ||||| |||
Sbjct 712 ACGATGAGGGAGAAGCTTCTTTCCGGTGATTTATGGGCGGCTCGAATCGAGAAGTTGTGG 771
Query 769 AAAGAAGTTGATGA---T-G--GTGTGTATTGGATTCGTGCTCGTTGGTATATGATACCT 822
|||||||||||||| | | |||||||||||||| | |||||||||||||||||||||
Sbjct 772 AAAGAAGTTGATGATGGTGGTTGTGTGTATTGGATTAGAGCTCGTTGGTATATGATACCT 831
Query 823 GAAGAGACCGTTTCGGGGCGTCAACCGCATAATCTGAAACGAGAGCTTTATTTGACGAAT 882
|||||||| ||||| |||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 832 GAAGAGACGGTTTCAGGGCGTCAACCGCATAATTTGAAGCGCGAGCTTTATTTGACGAAT 891
Query 883 GATTTTGCTGATATAGAGATGGAATGTATTCTTAGGCATTGTTCTGTCAAGTGTCCTAAG 942
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 892 GATTTTGCTGATGTAGAGATGGAATGTATTCTTAGGCATTGTTTTGTCAAGTGTCCTAAG 951
Query 943 GAGTTTTCGAAAGCTAGTAATGATGGTGATGATGTGTTCTTGTGTGAGTATGAGTATGAT 1002
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 952 GAGTTTTCGAAAGCGAGTAATGATGGTGATGATGTGTTTTTGTGTGAGTATGAGTATGAT 1011
Query 1003 GTTCATTGGCGTAGCTTTAAGCGTTTGGCTGAATTGGCTGATGGAGATTCTGATAGTGAT 1062
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1012 GTGCATTGGCGTAGTTTTAAGCGTTTGGCCGAATTGGCTGATGGAGATTCTGATAGTGAT 1071
Query 1063 CAAGAGTGGAATGGTAGGAAGGAGGAGGAGGTTGATGATAGTGATGAAGAGATGGAGCTT 1122
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 1072 CAAGAGTGGAATGGTAGGAAAGAGGAGGAGATTGATGATAGTGATGAAGAGATGGAGTTT 1131
Query 1123 GATGATGAAGTTTTGAAGAGTAAGCGAGGAGGTTTGACTAGTGCAAGAGGAGGTGCGAAC 1182
||||| ||||||| |||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 1132 GATGACGAAGTTTCGAAGAGTAAGCGAGGATGTTTAACGAGTGCAAGAGGAGGTGCGAAT 1191
Query 1183 TCTCGTAAAGGGAGATTCTTTGGGGTTGAGAAGGTGGGGATG--AAGCTGATTCCTGAAC 1240
|||||||||||| | |||||||| |||||||||| |||| | |||| |||||||||||
Sbjct 1192 TCTCGTAAAGGGCGTTTCTTTGGTCTTGAGAAGGT-GGGA-GCAAAGCAGATTCCTGAAC 1249
Query 1241 ATGTGAGATGTCATAAGCAGAGTGAGTTAGAAAAGGCGAAAGCTACTTTGTTGTTGGCTA 1300
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1250 ATGTGAGATGTCATAAGCAAACTGAGTTAGAAAAGGCGAAAGCTACTTTGTTGTTGGCTA 1309
Query 1301 CACGTCCTAAGTCTCTTCCTTGTAGAAGCAAAGAAATGGAAGAGATCACTTCGTTTATAA 1360
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1310 CACGTCCTAAGTCTCTTCCTTGTAGAAGCAAAGAAATGGAAGAGATCACTGCATTTATAA 1369
Query 1361 AAGGTTCAATCTCGGATGATCAGTGTTTAGGAAGATGTATGTATATTCATGGTGTTCCCG 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AAGGTTCAATCTCGGATGATCAGTGTTTAGGAAGATGTATGTATATTCATGGTGTTCCCG 1429
Query 1421 GGACTGGGAAGACTATTAGTGTGTTATCGGTTATGAAGAATCTGAAGGCTGAGGTTGAAG 1480
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1430 GGACTGGGAAGACGATTAGTGTATTATCGGTTATGAAGAATCTAAAGGCTGAGGTTGAAG 1489
Query 1481 AGGGAAGCGTAAGCCCTTATTGCTTTGTGGAGATCAATGGTCTCAAATTGGCTTCACCTG 1540
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AGGGAAGCGTTAGCCCATATTGCTTTGTGGAGATCAATGGTCTCAAATTGGCTTCACCTG 1549
Query 1541 AGAACATTTACAGTGTAATCTATGAAGCATTGAGTGGTCATCGAGTCGGTTGGAAGAAAG 1600
||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1550 AGAACATTTACAGCGTTATCTATGAAGCGTTGAGTGGTCATCGAGTCAGTTGGAAGAAAG 1609
Query 1601 CTCTACAGTGTCTAAATGAGAGGTTTGCAGAAGGAAAAAGGATTGGTAAAGAGGATGAGA 1660
||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1610 CTCTACAGTCTTTAAATGAGAGGTTTGCAGAAGGAAAAAGGATTGGTAAAGAAGATGAGA 1669
Query 1661 AGCCTTGCATACTTCTCATCGACGAACTTGATCTTCTAGTAACTAGAAACCAGTCTGTTT 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1670 AGCCTTGCATACTTCTCATCGACGAACTTGATCTTCTAGTAACTAGAAACCAGTCGGTTT 1729
Query 1721 TATACAACATTCTTGATTGGCCTACCAAGCCTAACTCCAAATTAGTTGTGTTGGGAATAG 1780
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1730 TATACAATATTCTGGATTGGCCTACCAAGCCTAACTCCAAATTGGTTGTGTTGGGAATAG 1789
Query 1781 CAAACACTATGGATCTTCCAGAGAAGCTGCTTCCTCGGATTTCTAGCCGAATGGGTATAC 1840
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1790 CAAACACGATGGATCTTCCAGAGAAGCTGCTTCCTCGAATTTCAAGCCGAATGGGTATAC 1849
Query 1841 AGAGACTATGTTTCGGTCCTTATAACCACACTCAGCTACAAGAAATCATTTCTACAAGGT 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 AGAGACTATGTTTCGGTCCTTATAACCACACTCAGCTACAAGAAATCATTTCTACAAGGT 1909
Query 1901 TGAATGGAAT-AGATGCTTTCGAGAAGACAGCTATTGAATTTGCTTCGAGAAAAGTAGCT 1959
|||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1910 TGAAAGGAATCA-ATGCTTTTGAGAAGACAGCTATTGAATTTGCTTCGAGAAAAGTAGCT 1968
Query 1960 GCGATTTCAGGAGATGCAAGACGTGCGCTTGAGATATGCAGGCGTGCTGCAGAAGTAGCG 2019
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1969 GCTATTTCAGGAGATGCAAGACGTGCGCTTGAGATATGCAGGCGAGCTGCAGAAGTAGCG 2028
Query 2020 GATCACCGTCTAAATACTAACAAATCCGCAAAGAATCAGCTGGTGATTATGGCAGATGTT 2079
|||||||||||||| | ||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 2029 GATCACCGTCTAAAGAGTAACAAAACTGCAAAGAATCAGCTGGTAATTATGGCAGATGTT 2088
Query 2080 GAAGCAGCTATCCAAGAGATGTTTCAGGCACCTCATATTCAAGTGATGAAGAGCGTGTCA 2139
||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2089 GAAACAGCTATTCAAGAGATGTTTCAGGCACCTCATATTCAAGTTATGAAGAGCGTATCG 2148
Query 2140 AAACTGAGTAAAATCTTCTTGACGGCTATGGTTCATGAGCTTTACAAAACAGGAATGGCA 2199
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2149 AAACTGAGTAAGATCTTCTTGACGGCTATGGTTCACGAGCTTTACAAAACAGGAATGGCA 2208
Query 2200 GAGACAACATTTGACCGAGTGGCAACGACAGTATCGTCTATCTGCTTAACCAATGGAGAA 2259
|||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 2209 GAGACAACCTTTGACCGAGTGGCAACAACAGTATCATCTATTTGCTTAACCAATGGAGAA 2268
Query 2260 GCTTTTCCAGGTTGGGACATTCTTCTTAAAATCGGTTGCGATCTTGGTGAATGTAGGATC 2319
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2269 GCTTTTCCAGGTTGGGACATTCTTCTCAAAATCGGTTGCGATCTTGGTGAATGTAGAATC 2328
Query 2320 ATTCTCTGTGAACCTGGAGAGAAGCATAGATTGCAGAAGCTGCAGCTGAATTTTCCAAGT 2379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2329 ATTCTCTGTGAACCTGGAGAGAAGCATAGATTGCAGAAGCTGCAGCTGAATTTTCCAAGT 2388
Query 2380 GATGATGTTGCTTTTGCATTGAAAGACAATAAGGATCTTCCATGGCTGGCCAATTACTTG 2439
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2389 GATGATGTTGCTTTTGCATTGAAAGATAACAAGGATCTTCCATGGCTGGCCAATTACTTG 2448
Query 2440 TGAGtttttt 2449
||||||||||
Sbjct 2449 TGAGTTTTTT 2458
> Ahg493435 jgi|Araly1|493435|fgenesh2_kg.7__2868__AT4G14700.1
Length=2082
Score = 1367 bits (740), Expect = 0.0
Identities = 980/1090 (90%), Gaps = 39/1090 (4%)
Strand=Plus/Plus
Query 1055 ATAGTGATCAAGAGTGGAATGGTAGG-AAGGAGGAGGAGGTTGATGATAGTGATGAAGA- 1112
||| ||||||||| ||||||||| || || ||||||||| |||||||||||||||| ||
Sbjct 660 ATA-TGATCAAGAATGGAATGGT-GGTAAAGAGGAGGAGATTGATGATAGTGATGATGAG 717
Query 1113 GATGGAGCTTG-ATGATGAAGTTTTGAAGAGTAAGCGAGGAGGTTTGAC-TAGTGCAAGA 1170
|| || || || || || || |||||||| || ||||||| || | |||| ||
Sbjct 718 GA-AGAAAGTGTTTG-TGCAGATTCAAAGAGTAA--GA-GAGGTTTAACGT-GTGC--GA 769
Query 1171 GGAGGTGCGAACTCTCGTAAAGGGAGAT-TCTTTGGGGTTGAGAAGGTGGGGA-TGAAGC 1228
| | | | |||||||||| | | |||||||| |||| |||||||| | | ||||
Sbjct 770 --A--T--G---T-TCGTAAAGGGCG-TATCTTTGGGCTTGAAAAGGTGGGAACT-AAGC 817
Query 1229 TGATTCCTGAACATGTGAGATGTCATAAGCAGAGTGAGTTAGAAAAGGCGAAAGCTACTT 1288
|||||| ||||||||||||| ||||||| ||| |||||||||||| |||||||||||||
Sbjct 818 GGATTCCGGAACATGTGAGATTTCATAAGAAGAATGAGTTAGAAAAAGCGAAAGCTACTT 877
Query 1289 TGTTGTTGGCTACACGTCCTAAGTCTCTTCCTTGTAGAAGCAAAGAAATGGAAGAGATCA 1348
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TGTTGTTGGCTACAAGTCCTAAGTCTCTTCCTTGTAGAAGCAAAGAAATGGAAGAGATCA 937
Query 1349 CTTCGTTTATAAAAGGTTCAATCTCGGATGATCAGTGTTTAGGAAGATGTATGTATATTC 1408
| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 938 CCGCATTTATAAAGGGTTCAATCTTGGATGATCAGTGTTTAGGAAGATGTATGTATATTC 997
Query 1409 ATGGTGTTCCCGGGACTGGGAAGACTATTAGTGTGTTATCGGTTATGAAGAATCTGAAGG 1468
|||||||||||||||||||||||||||||| |||| |||| |||||||||||||| ||||
Sbjct 998 ATGGTGTTCCCGGGACTGGGAAGACTATTACTGTGCTATCTGTTATGAAGAATCTAAAGG 1057
Query 1469 CTGAGGTTGAAGAGGGAAGCGTAAGCCCTTATTGCTTTGTGGAGATCAATGGTCTCAAAT 1528
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 CTGAGGTTGAAGCGGGAAGCGTAAGCCCTTATTGCTTTGTGGAGATCAATGGTCTCAAAT 1117
Query 1529 TGGCTTCACCTGAGAACATTTACAGTGTAATCTATGAAGCATTGAGTGGTCATCGAGTCG 1588
|||||||||||||||||||||||||| | ||||||||||| ||||||||||||| || |
Sbjct 1118 TGGCTTCACCTGAGAACATTTACAGTTTTATCTATGAAGCGCTGAGTGGTCATCGCGTTG 1177
Query 1589 GTTGGAAGAAAGCTCTACAGTGTCTAAATGAGAGGTTTGCAGAAGGAAAAAGGATTGGTA 1648
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1178 GTTGGAAGAAAGCTCTACAGTCTCTGAATGAGAGGTTTGCAGAAGGAAAAAGGATTGGTA 1237
Query 1649 AAGAGGATGAGAAGCCTTGCATACTTCTCATCGACGAACTTGATCTTCTAGTAACTAGAA 1708
||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1238 AAGAGAATGAAAAGCCTTGTATACTTCTCATCGACGAACTTGATCTTCTAGTCACTAGAA 1297
Query 1709 ACCAGTCTGTTTTATACAACATTCTTG-ATTGGCCTACCAAGCCTAACTCCAAATTAGTT 1767
| ||||||||||||||||| ||| ||| |||||||||||||||||||||||| ||| |||
Sbjct 1298 ATCAGTCTGTTTTATACAATATT-TTGGATTGGCCTACCAAGCCTAACTCCAGATTGGTT 1356
Query 1768 GTGTTGGGAATAGCAAACACTATGGATCTTCCAGAGAAGCTGCTTCCTCGGATTTCTAGC 1827
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1357 GTGTTGGGAATAGCAAACACTATGGATCTTCCAGAGAAGGTGCTTCCTCGGATTTCAAGC 1416
Query 1828 CGAATGGGTATACAGAGACTATGTTTCGGTCCTTATAACCACACT-CAGCTACAAGAAAT 1886
| |||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||
Sbjct 1417 CAAATGGGTATACAGAGACTGTGTTTTGGTCCTTATAACCACA-TGCAGCTACAAGAAAT 1475
Query 1887 CATTTCTACAAGGTTGAATGGAAT-AGATGCTTTCGAGAAGACAGCTATTGAATTTGCTT 1945
|||||||||||| ||||| ||||| | ||||||| |||||||||||||||||||||||||
Sbjct 1476 CATTTCTACAAGATTGAAAGGAATCA-ATGCTTTTGAGAAGACAGCTATTGAATTTGCTT 1534
Query 1946 CGAGAAAAGTAGCTGCGATTTCAGGAGATGCAAGACGTGCGCTTGAGATATGCAGGCGTG 2005
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 CGAGAAAGGTAGCTGCGGTTTCAGGAGATGCAAGACGTGCGCTTGAGATATGCAGGCGTG 1594
Query 2006 CTGCAGAAGTAGCGGA-TCACCGTCTAAATA---CTAACAAATCCGCAAAGAATCAGCTG 2061
| |||||||||||||| | |||||||||| | |||||||| | ||||||| |||||||
Sbjct 1595 CAGCAGAAGTAGCGGAGT-ACCGTCTAAAGAAGACTAACAAAACTGCAAAGAGTCAGCTG 1653
Query 2062 GTGATTATGGCAGATGTTGAAGCAGCTATCCAAGAGATGTTTCAGGCACCTCATATTCAA 2121
|||||||||||||||||||||| ||| || |||||||||||||||||||| |||||||||
Sbjct 1654 GTGATTATGGCAGATGTTGAAGTAGCCATTCAAGAGATGTTTCAGGCACCGCATATTCAA 1713
Query 2122 GTGATGAAGA 2131
|| |||||||
Sbjct 1714 GTTATGAAGA 1723
Score = 420 bits (227), Expect = 3e-116
Identities = 255/269 (95%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 2180 TTTACAAAACAGGAATGGCAGAGACAACATTTGACCGAGTGGCAACGACAGTATCGTCTA 2239
|||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct 1727 TTTACAAAACAGGAATGGCAGAGACAACTTTTGACAGAGTGGCAACAACAGTATCGTCTC 1786
Query 2240 TCTGCTTAACCAATGGAGAAGCTTTTCCAGGTTGGGACATTCTTCTTAAAATCGGTTGCG 2299
| |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 1787 TTTGCTTAACCAATGGAGAAGCTTTTCCGGGTTGGGACATTCTTCTCAAAATCAGTTGCG 1846
Query 2300 ATCTTGGTGAATGTAGGATCATTCTCTGTGAACCTGGAGAGAAGCATAGATTGCAGAAGC 2359
||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1847 ATCTTGGTGAATGCAGAATCGTTCTCTGTGAACCTGGAGAGAAGCACAGATTGCAGAAGC 1906
Query 2360 TGCAGCTGAATTTTCCAAGTGATGATGTTGCTTTTGCATTGAAAGACAATAAGGATCTTC 2419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TGCAGCTGAATTTTCCAAGTGATGATGTTGCTTTTGCATTGAAAGACAATAAGGATCTTC 1966
Query 2420 CATGGCTGGCCAATTACTTGTGAGttttt 2448
||||| || ||||||||||||||||||||
Sbjct 1967 CATGGTTGCCCAATTACTTGTGAGTTTTT 1995
Score = 372 bits (201), Expect = 8e-102
Identities = 295/339 (87%), Gaps = 11/339 (3%)
Strand=Plus/Plus
Query 303 gaagaaga-agaagaagaTAGATTCCTTCACTCCTGTTTCACCAATTAGATCTGAGACGA 361
|||||||| || || || || ||| ||| ||||| || |||| | ||||||||||||
Sbjct 15 GAAGAAGATAGCTGAGGA-AGCTTCGTTCTCTCCTACATCCCCAAATCGATCTGAGACGA 73
Query 362 TTaagaagacgaagaagaagaagagaGTTTATTACAATAAAGTCGAATTCGACGAAACCG 421
| | |||||||||||||| |||||||||||||||||||| |||||| | | |||||
Sbjct 74 -T----A-ACGAAGAAGAAGAACAGAGTTTATTACAATAAAGTTGAATTCAATGTAACCG 127
Query 422 AATTCGAAATCGGTGATGATGTTTACGTTaagagaagagaagattcgaattcagat---g 478
|||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 128 AATTTGAAATTGGTGATCATGTTTACGTTAAGAGAAGAGAAGACACGAATTCAGATGAAG 187
Query 479 aagaagaagatccagaaattgaagattgtcagattTGTTTCAAATCAGATACTAACATAA 538
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 188 AAGAAGAAGATCCAGAGATCGAAGATTGTCAGATGTGTTTCAAATCAGATACTAACATAA 247
Query 539 TGATTGAGTGTGATGATTGTTTAGGTGGATTTCATTTGAAATGCTTGAAACCGCCATTGA 598
||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 248 TGATTGAATGTGATGATTGTTTAGGCGGGTTTCATTTGAATTGCTTGAAACCGCCATTGA 307
Query 599 AGGAAGTTCCTGAAGGTGATTGGATCTGTCAATTCTGTG 637
| || ||||| |||||||||||||||||||||||||||
Sbjct 308 AAGATGTTCCCAAAGGTGATTGGATCTGTCAATTCTGTG 346
Score = 318 bits (172), Expect = 1e-85
Identities = 198/211 (94%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 802 GCTCGTTGGTATATGATACCTGAAGAGACCGTTTCGGGGCGTCAACCGCATAATCTGAAA 861
||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||
Sbjct 448 GCTCGTTGGTATATGATACCTGAAGAGACGGTTTCGGGGAGACAACGGCATAATCTGAAA 507
Query 862 CGAGAGCTTTATTTGACGAATGATTTTGCTGATATAGAGATGGAATGTATTCTTAGGCAT 921
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 508 CGCGAGCTTTATTTGACGAATGATTTTGCTGATATAGAGATGGAATGTCTTCTTAGGCAT 567
Query 922 TGTTCTGTCAAGTGTCCTAAGGAGTTTTCGAAAGCTAGTAATGATGGTGATGATGTGTTC 981
|||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 568 TGTTATGTCAAGTGTCCTATGGAGTTTTCGAAAGCGAGTAATGATGGTGATGATGTGTTT 627
Query 982 TTGTGTGAGTATGAGTATGATGTTCATTGGC 1012
|| ||||||||||| |||||||| |||||||
Sbjct 628 TTATGTGAGTATGAATATGATGTGCATTGGC 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98349012590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5