BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12640.1
Length=2802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333080 jgi|Araly1|333080|fgenesh1_pm.C_scaffold_9000108 3747 0.0
> Ahg333080 jgi|Araly1|333080|fgenesh1_pm.C_scaffold_9000108
Length=2454
Score = 3747 bits (2029), Expect = 0.0
Identities = 2321/2461 (94%), Gaps = 23/2461 (1%)
Strand=Plus/Plus
Query 126 ATGATGAAGGAAGACGGTAGAGGAAGGAATCCACCGTCGCGACATCTTTGGGTTGGTAAC 185
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 ATGATGAAGGAAGACGGCAGAGGAAGGAATCCGCCGTCGCGGCATCTTTGGGTTGGTAAC 60
Query 186 CTTCCTCATGGGATACTTGAACGAGAATTAGCCGATCGGTTCTTAAGATTTGGTGAATTG 245
|||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 61 CTTCCTCATGGGATACCGGAACGAGAATTAGCCGACCGGTTCTTAAGGTTTGGTGAATTG 120
Query 246 GAAAGCTTAGCGTTTCAGCCTGGACGAAGCTACGCATTTGTTAATTTTAATCACGATGAG 305
|| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||
Sbjct 121 GAGAGCTTAGCATTTCAGCCTGGACGAAGCTATGCATTCGTTAATTTTAAACACGACGAA 180
Query 306 GATGCGTTCGCTGCGATTGAGTCGCTTCAAGGCTTCCCACTCTCTGGAAACCCACTTAGG 365
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGCGTTTGCGGCGATCGAGTCGCTTCAAGGCTTCCCACTCTCTGGAAACCCACTTAGG 240
Query 366 ATCGAGTTTGCTAAGGCGGAAAAGTCATCAACTGGATCACGCACTGATGATATATATCGC 425
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct 241 ATCGAGTTTGCTAAGGCGGAAAAGTCATCAACTGGATCACGCACAGAAGATATATTTCGC 300
Query 426 CATGATGAACAGCGGTCTGCAGCAAGAGGGTCGTCTTTTGTCCAAAGGGACTCCAGAATG 485
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 301 CATGATGAACAGCGGTCTGCAGCAAGAGGGTCTTCTTTTGTCCAAAAGGACTCCAGGATG 360
Query 486 CGTTATGAGAGCCCAGACACATATAGCAAATCAAAAATGAATGATAGAAATGCAGAACCC 545
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTTATGAGAGCCCAGACACATATAGCAAATCAAAAATGAATGATAGAAATGCAGAACCC 420
Query 546 AGTGAGGTACTATATATAGGGTTTCCTGCTTCGTTGAAAGTAGATGATGCGCTCTTGAGG 605
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 421 AGTGAGGTACTATATATAGGGTTTCCGGCTTCGTTGAAAGTCGATGATGCGCTCTTGAGG 480
Query 606 AACGTCTTTTCTTCGTTTGGAGAAATAACAAAGGTCACGGTATTCCCTGGTCGCAGTTAT 665
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 481 AACGTCTTTTCTTCGTTTGGAGAAATAACCAAGGTCACGGTATTCCCCGGTCGCAGTTAT 540
Query 666 GCATTTGTTCAATTCCGAAATCTGATGGCAGCTTGTAAGGCGAAAGAAAGTCTTCAGGGA 725
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GCATTTGTTCAATTCCGAAATCTGATGGCAGCTTGTAAGGCGAAAGAAACTCTTCAGGGA 600
Query 726 AAGTTATTTGGCAATCCTCGAGTGCATATTTGTTTTGCAAAGAGTGAACCTTCCTCATCT 785
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGTTGTTTGGCAATCCTCGAGTGCATATTTGTTTTGCAAAGAGTGAACCTTCCTCATCT 660
Query 786 GGCAGTGGAAGGGGTCCGTCGGGTAGATCACTCTCTCCACCTTACAGATCTGTTGATCGA 845
|||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 661 AGCAGTGGAAGGGGTCCATCGAGTAGATCACTCTCTCCGCCTTACAGATCTGTTGATCGA 720
Query 846 CTGGGATCTTCAGAAGGTTATCTTCAGGATAGAAACTATGGAAGCATCAGCAGAATTCCC 905
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 CTGGGATCTTCAGAAGGTTATCTTCAGGATAGAAATTATGGAAGCATCAGCAGAATTCCC 780
Query 906 AGTGTGAGGGAACCACATTACATAGAAGATAGGGATTTAGAAGATTCTGAAGGTTACATT 965
||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct 781 AGTGTGAGGGAACCACATTACATAGCAGATAGGGATTTGGAAGATTCTGAAGATTACATG 840
Query 966 TTTAACAGGAAACGAGACTCAAGTAGCGATGGAGGTCCTGCATATGGAAGGTCGAGATCT 1025
||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 841 TTTGACAGGAAACGAGTCTCAAGGAACGATGGAGGTCCTGCATATGGAAGGTCGAGATCT 900
Query 1026 ACGCATAGATTTCCTCAGGATATGCATGAATATCATGGTAGTCCTGGGGAAATGGGTACT 1085
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 901 ACACATAGATTTCCTCAGGATATGCATGAATATCATGGTAGTCCTAGGGAAATGGGTTCG 960
Query 1086 TCATTCCGTGATAATCCTCACAGATTCCAGACAAGGAGTTCAGAGTATGAAGAGCCATGG 1145
||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 961 GCATTCCGTGATGATCCTCACAGATTCCAGTCAAGGAGTTCAGTGTATGAAGAGCCATGG 1020
Query 1146 GATCTACCCGAAGATGACTACTACTACCAGGAAATCAAGAGATTGAAGACAAGATCC-TC 1204
||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 1021 GATTTACCCGAAGATGACTACTACTACCAGGAAACCAAGAGACTGAAGACAAGATCCGT- 1079
Query 1205 GCAGCCTGAGAGGCAGCTCCCAGGGCATCAGCTTTCTGGTATAGAGCAAGAAAGACGCCC 1264
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 GCAGCCTGAGAGGCAGCTCCCAGGGCATCAGCTATCTGGTATAGAGCAAGAAAGACGCCC 1139
Query 1265 CTTTTCAAGGGCATCTGCTGATTTTTCCCCAAAAGATGCATTTGAGCGGAACTATGAGGC 1324
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 TTTTTCAAGGGCATCTGCTGATTTTTCCCCAAAAGATGCATTCGAGCGGAACTATGAGGC 1199
Query 1325 TGGACAGCTAAGATACAACCAAACAGTTGAGCAGCCGTTAAACCTGGCTATAAGGAATGG 1384
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1200 TGGACAGCTACGATACAAGCAAACAGTTGAGCAGCCGTTAAACCTGGCTATAAGGAACGG 1259
Query 1385 GGACAAGAGTAGCTTACGAGAACCACATGAAGAGTTAATGGGAGGTTATCCTCTGCCATC 1444
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1260 GGACAAGAGTAGCTTACGAGAACCACATGACGAGTTAATGGGAGGTTATGCTCTGCCATC 1319
Query 1445 AGTTGTCCCTGAAAGAAAAAGGTACACCCCTGAACTGAATCGACCATCACTAAAGGACTG 1504
| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1320 AATCGTCCCTGAAAGAAAAAGGCACACCCCTGAACTGAATCGACCATCACTAAAGGACTG 1379
Query 1505 GAACTGGGAAGGGACTATTGCTAAGGGAGGCAATCCCATTTGTCGAGCAAAATGCTTTCC 1564
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1380 GAACTGGGAAGGGACTATTGCAAAGGGAGGGAATCCCATTTGTCGAGCTAAATGCTTTCC 1439
Query 1565 TGTGGGCAAAGTGATGGACATGATGCTGCCTGAGTTTCTAGATTGCACGGCAAGAACTGG 1624
|||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||||
Sbjct 1440 TGTGGGCAAAGTGATGGACATGATACTGCCTGAGTATGTAGATTGCATGGCAAGAACTGG 1499
Query 1625 TTTAGACATGCTGGCTAAGCATTACTACCAATCATCTAAAGCATGGGTGGTTTTCTTTGT 1684
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTTAGACATGCTGGCCAAGCATTACTACCAATCATCTAAAGCATGGGTGGTTTTCTTTGT 1559
Query 1685 TCCTGGAAGTGATGCTGATATCGTGTTTTATGATGAGTTTATGCATTATCTGGAGGAGAA 1744
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1560 TCCTGGAAGTGATGCTGATATTGTGTTTTATAATGAGTTTATGCATTATCTGGAGGAGAA 1619
Query 1745 GCAACGGGCAGCTGTTTCTAAATTGGATGACACAACAACGTTGTTTCTGGTGCCTCCATC 1804
|||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1620 GCAACGTGCAGCTGTTTCTAAATTGGATGACACAACAACATTGTTCCTCGTGCCTCCATC 1679
Query 1805 TGATTTCTCCGAGAAAGTACTTAAAGTTCCTGGGAAACTAAGCATCTCTGGAGTTATTCT 1864
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1680 TGATTTCTCCGAGAAAGTACTTAAAGTTCCTGGGAAACTTAGCATCTCTGGAGTTATTCT 1739
Query 1865 ACGTTTAGAATGTGGTGGTTCTGGCTCCGGTGGGCCTGTTCAACAGCAAGGTGAGAGAAA 1924
|||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 1740 ACGTTTAGAATGTGGTGGTTCTGGATC---TGGGCCTGTCCAACAGCAAGGTGAGAGAAA 1796
Query 1925 AGATACAGACTTGCTAACTTATTATGGTGAAACATCATATTCAGAAGCTAGTGGAGCGTT 1984
|||| |||||||| |||| ||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 1797 AGATTCAGACTTGTTAACCTATTATGGTGAAACATCATATGCAGAAGCTAGCGGAGCTTT 1856
Query 1985 TCCTGATGTGGGAAACCCACGTATTCCGGGTCCAACAGC-TTTTCTGCGTAGTGCGGGTC 2043
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 1857 TCCTGATGTGGGAAACCCACGTATTCCGGGTCCAACAGCATTTT-TGCTTAGTGCGGGTC 1915
Query 2044 GTGACAATCAAAGTGCATCAATGGATCCATACGTCGAG-GACAAGCATGATCAGTTGAGT 2102
||||| |||||||||||| |||||||||||| | ||| | |||||||||||||||||||
Sbjct 1916 GTGACGGTCAAAGTGCATCTATGGATCCATACATTGAGAG-CAAGCATGATCAGTTGAGT 1974
Query 2103 CACCGGTATTCTGGATCGGACTGGCCGCCTCGTGATACAAACCCCAGAAGTTCAC----- 2157
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1975 CACAGGTATTCTGGATCGGACTGGCCGCCTCGTGATACCAACCCCAGAAGTTCACAGATG 2034
Query 2158 C--C--TTCATAGATCA---TACTGTTCAAAAACACAGCGGGTTTGTTCCTGGGAAACAG 2210
| | ||||||||| | |||||||||| |||| |||||||||||||||||||| |||
Sbjct 2035 CAACCCTTCATAGATAAAAATACTGTTCAAGAACATAGCGGGTTTGTTCCTGGGAAGCAG 2094
Query 2211 CAAAATGCAGATCTAAGTCGTTATCATGATACGGAAACTCCAGTCCCAGCAGGGTTTCAG 2270
|||||||||||||| |||||||||||||||||||| ||||||| |||| | |||||||||
Sbjct 2095 CAAAATGCAGATCTTAGTCGTTATCATGATACGGATACTCCAGCCCCATCGGGGTTTCAG 2154
Query 2271 CCTGAACAGCTTACACATTTAGCTTCCTCGCTACCCAGACAGCAACAA-CAGGTACAGAA 2329
|||||||||||||||||||||||||||||||| |||||||||||| || || ||||||||
Sbjct 2155 CCTGAACAGCTTACACATTTAGCTTCCTCGCTGCCCAGACAGCAA-AAGCATGTACAGAA 2213
Query 2330 CACTCCAAATCAGCCTGAGAGATATGCACCAGAAGGCCGAGCAAGTTTCAGCCATTTGCA 2389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 CACTCCAAATCAGCCTGAGAGATATGCACCAGAAGGCCGAGCAAGTTTCAGCCATTTGCA 2273
Query 2390 ACATGCGCAGACACCAAGCATACCTCAATTGGTAACTCCACAAAATCAAAATGTACAGAT 2449
||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 2274 ACACGCGCAGACACCAAGCATACCTCAATTAGTATCTCCAGGAAATCAAAATGTACAGAT 2333
Query 2450 ACAAAGTAGCAACAGCCAACAACAAGAAGAAACAGAGGCTAATCCACAGAAGCGTCTTCA 2509
|||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2334 ACAAGGTAGCAATAGCCAACAAGAAGAAGAAACAGAGGCTAATCCACAGAAGCGTCTCCA 2393
Query 2510 AGCAACATTACAGCTAGCAGCTGCACTTCTCCAGCAGATTCAACAAGCTAAACCGAGTTA 2569
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2394 AGCAACATTGCAGCTAGCAGCTGCACTTCTCCAGCAGATTCAACAAGCTAAACCGAGTTA 2453
Query 2570 A 2570
|
Sbjct 2454 A 2454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105738520120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5